Array 1 1021-750 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFFRK010000003.1 Limosilactobacillus fermentum strain NKN-51 FJDNMEGF_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================= ================== 1020 46 100.0 29 .............................................. GGTATGTTTAACAACTTTAATGGCGTGAT 945 46 91.3 29 ...................................CTA.....G.. TATATGTTTACTAAATATAATGGCGTGAC 870 46 89.1 29 ...................A..GTA............A........ TATATGTTTGCGGGCTATAATGGCGTGAT 795 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== ============================= ================== 4 46 95.1 29 TGGCGATCTAAGTCATTGGGATACCAGTAATGTTAGAGATATGTCT # Left flank : CAAAGCAGTCAGACTGCTCAAAATGATCAATCTGTACAGAGCAATCAAACTAACCAGACAGTTCCAAGTTCTGCAACGGCTGCTGCTACAAATAATTCTGATGGATTAGATTCCAATATTTATGGAACCGTTAATGTAAAAGATTGGGATTATCAAAATGATTCTAATACCTTTAATCTGACTAGCTATCATGGACAAGATACTAGACATATTATTGTGCCAAATCTAAATGACTTTGATAACGCTGGAGTAAAGATTGGAAATGCAACTGGAGTTGGGATTTCATCAAAACTAGCCAAGAGTTTAGCATCCCGAAGTTTAGCATTTGCAATAAGCAAGACGTCTGGAAAATATAGTGATAAAGTCACTGCAACTGACAATGATTGGTCATCTGTATTTTCTAATACCGGCCTGATAAATGCAGATGTAAGTAACCTGGATACACGGAATATCACGGATATGGACTCTTTATTTGCTGATAGTACTGCGTTAAAAACTGT # Right flank : GTGATGTTTTTCACCTCTTCGGCATCAGTATCTGGTTTAAACACTTGGAACATTAGGCAATCAACGGATATGTCTGCTATGTTTGCTGGTTCGTCTTTACCATATAAAATCGTTGCATCTAATGAAAGATCAGTTATACCCAATCAGGTTACTCTTAAAGACTATACTGGAAAATTTTTAGCTATTATTGATACTCCAACAATTTATGACTCTAATAAATCTGTCAGGTCAACCATTTACGGTATGGTACAAGCTGAAATTGATAAGCTTAATAAATTGAATCATACTTTATATGAGACTCCTATTATTATTTCAGATGGAGATGACGACGATTATTCAATAGCTAATGCAACATATGTCGTTAATAACGAAAGCCAATCTAAAACTGGTTTAATCAATTACGTTGACCAGGATGGCAAGGTAGTAAAAACTGACCAAGTTTCAGGAAAAGTTGGCGATAAAGTTGATGTTAAGATTTCGTTACCGGATGGTTATGAATT # Questionable array : NO Score: 2.61 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGGCGATCTAAGTCATTGGGATACCAGTAATGTTAGAGATATGTCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.87%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.50,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 751594-752687 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFFRK010000001.1 Limosilactobacillus fermentum strain NKN-51 FJDNMEGF_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 751594 36 100.0 31 .................................... CCCCCTAAAATTCAATTTTGGCACTCGGCAC 751661 36 100.0 30 .................................... CTAATAGTGTTTTTAACTTCACGGGCTTAA 751727 36 100.0 30 .................................... GATTGCGCAATCGAACGATGCTCAGCACAA 751793 36 100.0 30 .................................... CGACCTAATCAGCTACTGATGAAACCACAG 751859 36 100.0 30 .................................... TGGTCACGTCCCACGCAGATTGATTGCATA 751925 36 100.0 30 .................................... TACCAGTTAAACAGCTTTTCACTGTATCTC 751991 36 100.0 30 .................................... TTTTGGCCGGCGGTTTTTTGTTGTGCTCCT 752057 36 100.0 30 .................................... TGGATTGCTCCTCATTTATCAGTCAGGTTT 752123 36 100.0 30 .................................... AAGGCTGATGATGAAAAGATCGAAGCCCTC 752189 36 100.0 30 .................................... AAATGATTTAAATTCTATCTATGACTCATT 752255 36 100.0 30 .................................... TTTTGATCTGATTTGCTCTTAGTTCCAGCA 752321 36 100.0 30 .................................... GACTCAAACTACAAAGTGATGATGAGCGAA 752387 36 100.0 30 .................................... CAATTTGATTGATAGCGATCGCCCAGGCGG 752453 36 100.0 30 .................................... CCGGAAAACCAAAGATCCAAGCGAAGACCT 752519 36 100.0 30 .................................... GACGGTTTCAAACGGAAACAGAATTGAAAT 752585 36 97.2 30 ........................G........... CGAACCGCTTTCATGCGCTGAGAAACGTTG 752651 36 86.1 0 ...............T............TA....TA | T [752677] ========== ====== ====== ====== ==================================== =============================== ================== 17 36 99.0 30 GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC # Left flank : TAATCCAACCAAGCTTGATAGTTACCAAACGGCACTTGATAAGATGATTGTCAAAAATATTAGTATCGAGAAGCGAGATCGGATGAATAACCTTGCTCGAGAGGTGTACTCAGAGATGCAAGATTCTTTGTTCGAATTTGACTTGCCATTGGAGGTGCGGTATGACGAAAGTCTTTTGAGATTATACAAGTATGCGAAAATTAAATATTTGACGCAAGTAATAAGGCAACCTTATGGTACAATTGAAACCGATCTAAAATTACATCTCGAATTAAAAGACTGTCAGGTTCTTGGGTATTGTAATGTCGCTAATTACTTATTGCCTGAGCAGATACAGGAATTCGCTACTCTTGTTGAGAAAACCGAATTGGCAGTTTTATTAGTGGAATTCTCAGAAAAGAGAGAAACTCTACAACAACTCAAACAGGATATTTACCGGATTGATCGGGACTTCGTGGACTGGCACGAATAGACCGTTAGTTTTTGATGAGAAAACAACG # Right flank : ATAGACTAAGGGCGTTGCTGTGTTTAGCAATGCTTTTTTCATCTACGCCGGCCAAACCAGTGATTACAAGGAGTTGGCCTTAAACATCGCCAACTTCCCCAAGTTCTTGCAACTGGCCTTTTCGACGGCGGTCCTCGACCACTACGAACTGCTCAAGCGGGGGCTAATGGTTTTGACCTGCCTGATTCTCTTGGCCGGCTTTTGGTATCTGCGCCGCCTGGACTTGACCCCGCAACGTTTCTTGGTGGTGGCGACCTGGAGCTTTTGGACCTGCACGATGTTCTTGCCGTTGATGCACGACCGTTACTCCTACTTCGTGATGGTGATGCTAGCCCTCGTCGCCTTATTGGACCGCCGGATGATCGGCGTTGCCCTGGTTTCGATCGGGATCAGCACCGTGCTTTACCTGCGCTACTTGCTTAACGCCGACGCGGCGATCGACCTCTGGCCGCTGGCGATCATCCAAATCATCAACTACTGTGGCTTTACGGCGGGCACCT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 966238-965482 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFFRK010000001.1 Limosilactobacillus fermentum strain NKN-51 FJDNMEGF_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 966237 36 100.0 35 .................................... TGGGTTCAGAACGTCGTGAGACAGTTCGGTCCCTA 966166 36 100.0 37 .................................... CCCTGGCCTTTTTCGAGGGCTATCACTCCCGTGGTGA 966093 36 100.0 38 .................................... CCCCTCAAGATCGAATAGGTGATCTGTTGGACGAGTTT 966019 36 100.0 36 .................................... TGCACCCCGGTTCAGACACTTTCCCCAGGTTCGCCA 965947 36 100.0 34 .................................... TTTGTACTAATGTGATGTTGTATTTCTTTATTGC 965877 36 100.0 35 .................................... TGTCGTAACGCTTGTTGTTTATGATCTTTTTCATT 965806 36 100.0 36 .................................... GCCACGTGCAGCGCCTTGCGACGCCGCCCCCGGTGA 965734 36 100.0 35 .................................... GAACGGGATGACACTTTGGCCCTTCCCTTGCATCG 965663 36 100.0 36 .................................... CGGTCAATTCGGTAAACAACTAGATTCTTTACTGTT 965591 36 100.0 36 .................................... TAAAACCCCTTTTCTTTTCCTTGTTTCCTTCTACGT 965519 36 86.1 0 ...................T.T.G..G........A | G,T [965485,965487] ========== ====== ====== ====== ==================================== ====================================== ================== 11 36 98.7 36 GATATAAACTGATCTCCGCCAGAAGGAGACGAAAAC # Left flank : AAACAGTTTTACGAATGGAATTATGCACCAACCTTCCTTTCTGCTTTTCCCTCTAAATACATTCAGGGGAATTACAAAGCACCCATATACCTCGGAGCAGGGAGCGGTCTATGGAGCAAAGTTGACCATCAACATGTTGATATTGAAGGGATTCGACGTCGAACTCCAAGAAAAATGAAGATGAAGTTTAATGGTGCCCTGAAGCTAACCAAGAGCCGGATAGTACGCTATAAGACTCCTAAAAAAGATGGCTCATTTGAACGACACGTTCTCATTATTAATAACGAAAATCTCTACGAAATGGGAAAATGTGGGTTCAAAATCAAGGAATTGTAATTTCAATTCTGAACTAGCTAAGTTATAATATATAGAGTTAATATTCGAAATTGACAAGGTCCAGAAAAAGGGCCAGAGAGTCTTAAATGAGTACCCGCCTGGTCTAATTGAGGGCATTAAAATGTCAAGTTATCCTTGATTTAGCAAGAAAGTTAGCAGGATCG # Right flank : AGAGAGAGCGTGTATCGAAATTCCAGGATTTCGATACACGCTCTCTCTTGATTTAGGGGTCATGAAAGCTCATTGCAGTAGACTAGATATATAATTTATAATTGACACATAGGTTATATTCGAGAGAAAGAAATTAATACCAAATGGAATAGTAGGATGTTGATTTATCGGCAGGTCCTTACTTCGGGAGGGGTAAAGGGTGAAGAATATAGTTTATGTGGAGAATGAATGTTTTGTTGGTGTCACTAAAGAAGGGCTAAAATTTTCAAATATCAAAACAAAGGAAAAGAAGTATCTGACCTTTGATGATATCGGTACATTGGTGTTTGACAATAGAAAGTGTTATCTATCGGAGCGGGTGATTGAATATTGCGTTCTCAATCACATTGGGATTTTATTCTGTGACCGAAGCCACTCTCCTTTAGAAATGATTGAGACCACCTACAATCAGGAACACCGCTATGAACGCTTGAAAAAGCAACTTACCTTAACTAGTAAGG # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAAACTGATCTCCGCCAGAAGGAGACGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 1 8176-9530 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFFRK010000005.1 Limosilactobacillus fermentum strain NKN-51 FJDNMEGF_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ===================================== ================== 8176 35 100.0 36 ................................... ATGCAACAAATGAATGATAGCAAGTCCGGCCCTATT 8247 35 100.0 34 ................................... ACCCTTTAACTCAATGCTTGATGGCCTGCGAAAA 8316 35 100.0 34 ................................... AACAAGCCGTGTCCGATAACTCCGGTAACATTAC 8385 35 100.0 34 ................................... AGATGGTGACAGTTCCTATCGGTTGGCTCGTATA 8454 35 100.0 34 ................................... TCCAAGATGACAGCAGAAACAAATTAGGAGGATA 8523 35 100.0 33 ................................... TTGAAATCTTAAGTGACTGGTTAGTTGTCTTGT 8591 35 100.0 34 ................................... ACGACATCAACAGCCAGTTTTGGTCGCAAAACCA 8660 35 100.0 33 ................................... AGATAGTCTACCTGCTCTGCGACAGCGTGCTTA 8728 35 100.0 35 ................................... AACTCGGCCAACCATTGATCGGCTTGCTCTTCATC 8798 35 100.0 35 ................................... ACGCTGATTGGTGCAGTTGCTACCTATGCAAACTT 8868 35 100.0 34 ................................... ATCAACACATCTGACGATAGCGACCTATTGACAG 8937 35 100.0 36 ................................... TCTATCTAAATGGGAAAAGTATCGCTATCTTTTTAA 9008 35 100.0 33 ................................... CTTACCAGAGGACTATACAAGCGTGGATGTTCC 9076 35 100.0 33 ................................... GTTGAAGTCGTTGATAACGGTTTTACGGGCAGC 9144 35 100.0 34 ................................... AAATCGTCCACTTGCTTCTGCGCAGCCGCTTCCT 9213 35 100.0 35 ................................... ACTTCAAGGCTTCAACGGTGGTTTATTCGCTTGAT 9283 35 100.0 37 ................................... TGACGATCCAACTGTTGGTGACCGGCTTAACCAGATA 9355 35 100.0 36 ................................... TCTACCTCCTACCTAATTTCCACCACCAAGTGCGGC 9426 35 100.0 35 ................................... GATTGCTGTCGTTGTCTAGATAGTAAAAACGACCC 9496 35 97.1 0 ..............................A.... | ========== ====== ====== ====== =================================== ===================================== ================== 20 35 99.9 35 GTCGCACTCCTTCGTGGGGGTGCGTGGATTGAAAT # Left flank : CGAGGCGATTTGGATGAATATCCACCTTTTCTCTGGAAGTAGGTGCTTTAAATGTTGGTAATTGTTAGTTATGATGTAAATACAGAAGACCCAGTTGGGAGAAGACGATTGCGTCACGTGGCAAAGATTTGTAAGGATTACGGTCAACGGATTCAAAAGTCAGTATTTGAATGTAATGTTGATTCCACTAAGCTTACTGTCTTAAAGCAACGTCTTCTAGCGGAATATGATGAAGATACAGATAGCCTATGTTTCTTTAATCTAGGTAACAAATATCAGAATAAGGTAAGCCACTATGGTTCTAATTCGGTGGTAAACTTAGATGAACCGGTAATATTCTAGTATTATCAGTAGTGCGAACCTAAAGTGAACATAAATTCTTTAAGGATTCGCACCAGAATTTTGGTGATTTTATTCAAAAATCACACTAACAGTTGGTTTTTCAGCTGTTTGACACCCAATATGTAGAAGATGGAGTTCTCTATTTGCTATATATTGCG # Right flank : TGTGAACTGTTGTTGAAATTACCATGCGGGTATAGTCGCACTCCTTCGCGGGGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTTCGTGGGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA //