Array 1 162521-160617 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSMD01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10648 Scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 162520 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 162459 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 162398 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 162337 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 162276 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 162215 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 162154 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 162092 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 162031 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 161970 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 161909 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 161848 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 161787 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 161726 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 161665 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 161604 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 161543 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 161482 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 161421 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 161360 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 161298 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 161195 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 161134 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 161073 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 161012 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 160951 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 160890 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 160829 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 160768 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160707 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 160646 29 96.6 0 A............................ | A [160619] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 180145-178652 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSMD01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10648 Scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 180144 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 180083 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 180022 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 179961 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 179900 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 179839 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 179778 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 179717 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 179656 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 179595 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 179534 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 179473 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 179412 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 179351 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 179290 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 179229 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 179167 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 179106 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 179045 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 178984 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 178923 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 178862 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 178801 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 178740 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 178679 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //