Array 1 163507-161847 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACZIS010000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 117 NODE_2_length_605193_cov_38.8522, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 163506 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 163445 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 163384 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 163322 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 163261 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 163200 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 163139 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 163078 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 163017 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 162956 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 162895 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 162834 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 162773 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 162712 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 162651 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 162589 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 162486 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 162425 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 162364 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 162303 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 162242 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 162181 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 162120 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 162059 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 161998 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 161937 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 161876 29 96.6 0 A............................ | A [161849] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181620-179639 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACZIS010000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 117 NODE_2_length_605193_cov_38.8522, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181619 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 181558 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 181497 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 181436 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 181375 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAG 181314 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 181253 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 181192 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 181131 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 181070 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 181009 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 180948 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 180887 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 180826 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 180765 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 180704 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 180643 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 180582 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 180521 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 180460 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 180399 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 180338 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 180277 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 180216 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 180154 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 180093 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 180032 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 179971 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 179910 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 179849 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 179788 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 179727 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 179666 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //