Array 1 18160-16739 **** Predicted by CRISPRDetect 2.4 *** >NZ_APTA01000105.1 Neisseria meningitidis 2000063 gnm2000063.contig.104, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 18159 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 18093 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 18027 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 17961 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 17895 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 17829 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 17763 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 17697 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 17631 36 100.0 30 .................................... TTTCTTTTTGTAATTGTTCTGCCTTTTTTA 17565 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 17499 36 100.0 30 .................................... TTAAAATAATAACCCAATACACGATGTTAA 17433 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 17367 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 17301 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 17235 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 17169 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 17104 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 17038 36 100.0 30 .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 16972 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 16906 36 100.0 30 .................................... TCCCGACATTGACGGAAAAACCCGAAAGCA 16840 36 100.0 30 .................................... TTATGCCGTTTTCATCCGGCTTGAACATTT 16774 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 99.7 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTCTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //