Array 1 201226-202657 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOEO01000001.1 Escherichia coli strain MOD1-EC5323 MOD1-EC5323_1_length_322066_cov_35.0824, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 201226 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 201287 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 201348 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 201409 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 201470 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 201531 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 201592 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 201653 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 201714 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 201775 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 201836 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 201897 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 201958 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 202019 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 202080 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 202141 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 202202 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 202263 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 202324 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 202385 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 202446 29 96.6 32 ............................C TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 202507 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 202568 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 202629 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 218159-218859 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOEO01000001.1 Escherichia coli strain MOD1-EC5323 MOD1-EC5323_1_length_322066_cov_35.0824, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 218159 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 218220 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 218281 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 218342 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 218403 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 218464 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 218525 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 218586 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 218647 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 218709 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 218770 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 218831 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //