Array 1 2879239-2880731 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019442.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 81741 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2879239 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 2879300 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 2879361 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 2879422 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 2879483 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 2879544 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 2879605 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 2879666 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 2879727 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 2879788 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 2879849 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 2879910 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 2879971 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 2880032 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 2880093 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 2880154 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 2880216 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 2880277 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 2880338 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 2880399 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 2880460 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 2880521 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 2880582 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 2880643 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 2880704 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2896863-2898766 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019442.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 81741 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 2896863 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 2896924 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 2896985 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 2897046 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 2897107 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 2897168 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 2897229 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 2897291 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 2897352 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 2897413 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 2897474 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 2897535 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 2897596 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 2897657 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 2897718 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 2897779 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 2897840 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 2897901 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 2897962 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 2898023 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 2898084 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 2898146 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 2898249 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 2898310 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 2898371 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 2898432 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 2898493 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 2898554 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 2898615 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 2898676 29 96.6 32 .....T....................... AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 2898737 29 96.6 0 A............................ | A [2898763] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //