Array 1 1191-2417 **** Predicted by CRISPRDetect 2.4 *** >NZ_SELU01000077.1 Pseudanabaena sp. UWO310 PseudUWO310_Contig_78, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 1191 35 100.0 33 ................................... GAAACGTGTTTTGAAATAAAGACCCGCTCACAT 1259 35 100.0 33 ................................... CAGCATTTGATTGGTAGGTACCAGTCAATAATA 1327 35 100.0 33 ................................... GTTAGCTTGTAGCCAAAGAATTGCGGAATTCCT 1395 35 100.0 40 ................................... ACTTGAATTTCGTCCTGTTTGAATCCTTGGTTTCCCTGAG 1470 35 100.0 33 ................................... TGTGCAGGTTGATTTAGGAAGTTTATTATAAAC 1538 35 100.0 34 ................................... CATTTTCATTGTCATTGTCATTTTCATCAGATGA 1607 35 100.0 37 ................................... AATCGCCAGCTAGAACAGATCCAGTGAATAGCACAGT 1679 35 100.0 32 ................................... ATGACTTGACGTACCAAACTTGGAGCTTGGTT 1746 35 100.0 37 ................................... TCTTTATTAAAAATAAAGTAGGTTGCGTTAGTTAAAA 1818 35 100.0 40 ................................... TACTATTCAAGATTTGGAAGTTCTGAATCAATCAAATACA 1893 35 100.0 35 ................................... CAGTATGACCTCAGCAACCACAGACACCCTAGAAA 1963 35 100.0 35 ................................... CTGAAGATTGATTAATACCTACTCCAGATGCAGAT 2033 35 100.0 34 ................................... ACGAATCATACCACTTAACATTTAGAGAATTCCA 2102 35 100.0 35 ................................... TCGTTTTGATACCAAAACTTTGAACTTTCAGTTCC 2172 35 100.0 35 ................................... GTTCACGGGTGCTGGAGTAGCAGTTTGGTTTCCTG 2242 35 100.0 36 ................................... AATCTTTAATTGTATAAAGACCATTATTTTGTTGAT 2313 35 100.0 34 ................................... TTAACGAGATTACTGAAACAGCTCCAGTAATCAA 2382 35 100.0 0 ................................... | T [2390] ========== ====== ====== ====== =================================== ======================================== ================== 18 35 100.0 35 GTTTCAAATTTTTTACCCCGCAAGGGGACGGAAAC # Left flank : GGTCAGCCAAGCTTTGCGGGAAAATTACGGTTTAAGTCATTGGGTTGAGTTGCCTTCGTTTAGCAAACTCGGTGTTGGGGGCAGCAAAATCAAGGCAAAGATCCTTTACTGCGATCTCATTTTTATCCTGACTTGCTATATGCGTCACGGTCAAACTGATGCGGTTGCAGCGCTAAAGCGATCGGGGGCGATTTCTGGTAAGGTGATTTTGCTTTGCTGTCGGGGCAGAACTGGTGTAATGCGGGCTATTTTGCATAATGTTGACCTTTTGTGTGAGGTGGCATAGACTATATTTCATTGACCCAGTTCTAGGGGTCAGCCAGTACCTTGAAAACCGCATAACTTCGTCAACCCCAAGAACTCGCTCTCCCAGTAAGGGTTTGAGCCTGTTTTGAAGGAGCCTTATTGAAAGCTATTCTCAATAATTTGACAATTTTCTTACCCCCAAGAATTTTCGTGTTGTCAAATGCGCTCTAGGTAAGCCCTCCAGAAGCCGAGTG # Right flank : CGGGAGGGAAAGATCGAAGAATGAAGATCGAAGAGGAAAAAAAAGACGAAAAAAGAAATAAATATTGTTGACGGCAAAAACAAAAGATAATAGTTTTCCGAGGAATTTAAGCTAAATTCGATCTTCTTTCTTCATTTTTCCGTCTTTAGTTCGCGGGGACGGAAACGGGAGGGAAAGATCGAAGAGGGAAGAAAAGACGAAGAAATAAAAAATATTAGTGACAAAGAATAGAATAAGATAAGAAATAATAATTTACTGAATCCTAAAGCCAAATTCAATCTTCAGTCTTCCGTATTCATTTTTTTCCTTGGAATGCTCCCTTTACCTCAAGCTAGTAAAATTTAAGGCTAAAGATCGCCTTCTCCAAATTATTCTTTGGTAAAGCAATGCGTAAAACTATCGACTCCCTCGCCAAGCCTAATAAATATCCCATCATCTTCTTTGTCTTTACCCTAATTCTCAGCATCGCTGCCAACGGATTATCGACACTGCTCCTTGAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAATTTTTTACCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 17952-17317 **** Predicted by CRISPRDetect 2.4 *** >NZ_SELU01000077.1 Pseudanabaena sp. UWO310 PseudUWO310_Contig_78, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 17951 35 100.0 37 ................................... GTGCATTCAGAACGGGTCGTTGTCACGGTATAAGCTT 17879 35 100.0 38 ................................... AGATATCGCATAACTAACTAGGGTATCAAGGCGGGATT 17806 35 100.0 42 ................................... CCTTTATATTTACCAATATAGATAGCAAACAAAATCAATAGT 17729 35 100.0 39 ................................... AAAAATGGAAGAAAGAACGACCGAACCACGAACAGAAGA 17655 35 100.0 43 ................................... CTGCTTGTTGAGGCTTTGCCCTCTTTCTCCTTCCCATATTAGG 17577 35 100.0 40 ................................... TTTACACTGCCATCGGGGCAGGAGTCAACAGAGTTGAAGT 17502 35 100.0 40 ................................... ATTAATATTGTTTTGGTGTTTAGATTTGTTGCCCCACCGA 17427 35 100.0 41 ................................... TCAGCACTGTTTCCAGCAATGACCTTGTTTTCCGCAGCACT 17351 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== =========================================== ================== 9 35 100.0 40 GTTTCATACCCATTTCCCCGCAAGGGGACGGAAAC # Left flank : TGAGAAAATGCAATAAACAATAAAAAAGTGCGATTAAAATCGATGATAAATATTAAAGAAGAAAGATAATAGGTTTTGCTGAATATATCAAATTAAATTCATTCTTCCGCCTTCATTCTTCAGTCTTTCCTTTATCGCATCAAGAGCGATGAAAAAACTGTATGAGCAGTTGAAAAAACGAGTTAAACCTGATGCGTTGCCAAAGGCTTTAGCGATCGGTAGTGCGTTGCCAAAACCACCACCAAATGTTTACATTATTTAAGTTGACTTTTTTGTTTTTAGCCATTATTCTGATTTGTATCGTCAAATCGACGCACCCCCACCGAACCTTGAAAACCACATTATTTCGTTGACGTGTGTCGATGGCATATCTAGTAAGGTTTTCAAGATGTCCGTTTTCTTAAAAACCTGTCAATAAGGCGTTCTTATTGAGACTAAAATGAGGTGCGTCGATTGACCCCTTTGAAAGGTTTGCTGGATATGGCTTAAAAATGTGAAAT # Right flank : GTAAGGGAAAGATCGAAGAATGAAGATCGAAGAGGGAAGAAAAGATGAAATCAAGAAAATTATTGCGCTTGTCTTTCTTCCATCTTCGACCTTCCGTCTTTCATCTTACTTTCACCCCCATTTTCCTGCACAAATTACCGTTGAGGGTTTATTCTTGAATAAACCCTCAACGGTAATAAATAGAATTTTGGTCATAGTTTAATCCACTCGCTTAAACTTTTTAGGAATACCATCATCAACCTCCAAAATTTCAACCTTGACAACTTGATCAATAGATAGAGTTTCAAATTTTTTAGGCTCTTTATTATTACGCCTAATGCTTGTCCCGATGATTTCGTAGGTAACTTCTTTGCCTTTATCTTTCTTGCTGATTACCTTAGCCTCAGTAATATCTCCTACTTCCAACTGCTGAGCCGTCTTTTCTAGCAGTTTGGCATCTAGCTCCGCGATGGGGGCAGTTTTGTAATAGCGCATCAATCGAGATACCCAGCCAAGGATTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCATACCCATTTCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 3 20850-23103 **** Predicted by CRISPRDetect 2.4 *** >NZ_SELU01000077.1 Pseudanabaena sp. UWO310 PseudUWO310_Contig_78, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 20850 37 100.0 46 ..................................... CTAGAACGAATCGATAAAAAAGCGGAATATCGTCTAGAACTACACG 20933 37 100.0 39 ..................................... TAATGCTGAATCTTTCTCTTATGATGATTTTTCAAATAA 21009 37 100.0 39 ..................................... CCGCTTGTAGCGACAGCTTTGTAGATTGCCAAAAACTCA 21085 37 100.0 37 ..................................... ATGATTGTCAGCAATCTCCCTAGCGAGGGAATCAATC 21159 37 100.0 37 ..................................... TGCTTTCGGCAAGGCTTTCCACATTCTTGACATTGCC 21233 37 100.0 37 ..................................... AGGATTGGTGATATCTTCGTTAAGGGCATTACCATTG 21307 37 100.0 40 ..................................... CTATGCAAAAATCATCTAAATTGCAGTTTAAATTGAGAGA 21384 37 100.0 39 ..................................... TGTCATCTATACTAACCCATAAATGATTTAAACCTTCTT 21460 37 100.0 38 ..................................... TCCCTGCGAAGTTGTCGTCGATGTCTTGCAGTACGTCA 21535 37 100.0 38 ..................................... AAGTATGTGGTCATGGGGAGATCGCCAATTAAAACCGA 21610 37 100.0 38 ..................................... CTTAGATTTTTTGTATGCTTCGATCAGCATTAGAGAAA 21685 37 100.0 37 ..................................... TGTAGATAGCGGGTTGTCACTTTTGTACTGTTTTGTG 21759 37 100.0 42 ..................................... CGAGTTCAGGAATAGTTAAGTTACGCAAATCTTCTTTTATAA 21838 37 100.0 37 ..................................... GAAGTGTAACAGTTGCACCAACTTTTTCAAGGTTCTC 21912 37 100.0 37 ..................................... CTGACATAGTAAAGAATTACCATATGTCCTAGATAGC 21986 37 100.0 41 ..................................... GTGATGCCGTCGCCGCGGCCGAAGGGGCTGTTCATCTGCAC 22064 37 100.0 39 ..................................... GATTCAAAAAAATATATACCTCCTGAACAACGTTATTTA 22140 37 100.0 43 ..................................... AGTCAGCAGGTGTTTATCCTGACAATAATGCTTGGTTATTTTT 22220 37 100.0 37 ..................................... CAGAGTGATTAAAGCTGATTCTATCAGCGCTGCAATC 22294 37 100.0 39 ..................................... ATCGAGGCCGCACCGCCTCGCCCCCTGCCCGTAGACGCG 22370 37 100.0 40 ..................................... TTGTTTGAAAATCTTCTTGTCTTAATTTGCGTCGAACTGA 22447 37 100.0 38 ..................................... CCATGATTACATAGAAGAAAATGAGTGGTTTGTTCCTT 22522 37 100.0 40 ..................................... AGCTGGTTTTGAGAAAGAAGTATACGAGCTACTACTAGGT 22599 37 100.0 41 ..................................... CTGAGAGGAGATACAGAAGGTGCAACAATTTATGATCAGTT 22677 37 100.0 45 ..................................... TGCCAAATCGAGCATATCGTTCTCATCATCAGAAATGGGAGTTAT 22759 37 97.3 43 ..............................T...... TTTTAATTTCTGTATTGTGAGTAGCAAGTAAAACTTGGCTAGA 22839 37 100.0 36 ..................................... TCGTAGTTTTAGCAAAAGGTATTTGAACGAAATTCT 22912 37 100.0 42 ..................................... TACAATTGCTTACATCACATCTCATAACACCCATGTTAATCA 22991 37 97.3 39 ...................................G. TCTTTGATCTGCTCGAAGGTGATTACAGCATCGGTCACT 23067 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================== ================== 30 37 99.8 39 CTTCGCTACGATATTTACCCCGCAAGGGGACGGAAAC # Left flank : CGTTTAAGGTTGGCGAAGCGGATCGAGCAACGCTGTCAGAGGGTGCAGCGATCGGTTTTTGAGTGTCCTTTGGATGAGTCGGTGCTAGATCGTCAGCTAGAAAGGTATTGGTTGCCTTTGTTAAATCTGGAGGAAGATAATTTGCGGGTTTATCCTTTGGATGCGACGGCGAAGAGACGGACTAGGGTGTTTGGCAGTCCGCGTCCTTATGAGCCGCCTGATTTTGTGATTTTATAAGTGTTAAGCTATGTAAAGCATCGGCTATTTTTGTCGCTGGTTGCTATGGTTAGATTTTGGGAGTTTGAGTGATTATTTGAGGGCTAATGGGTATTTTTAGGTTTGACTTGTAGGCGAAATTGGGTTATTTTATTGATATTGCAGTTTTGAAAACAATTTTAAGTTTCCAATTTGTTTTCAGGTTCGTTTGTAAACGAATGTTAAGTAAGCTGCAAAAACTGAACCTTGAAAACTGCATAGTGTATAGCATTCAGAAGCCTAGG # Right flank : CGTAAGGGTAAGATCGAAGACTGAAGATTGAAGAGGGAAGAAAAATGAAAAAAGCAGAGAATAGTTGGTGGCAACAAAATAAAATATGATAATTTGATTAGACTTTAAACGCGATGTGCAACTATTCTTGAGCTATTGCTCTGAGGTTGTTTAAGCTACCGAAAATTTAAACTACTCATTAATGTAGTACGAGAAATCACGGCTTTCAGACTTTTAGTTGCACATCGCGTGACTTTAAGATAAATTCAGTCTTCAATCTTCAATTTTTCGTCTTTAAATTTCCCTCTTCATTCTTCCCTCTTCCGTCTTTAACTCGCGGGGACGGAAACGTAAGGGTAAGATCGAAGATTGAAGGGTAAAGAAAAGATGAGGAGTAAAAAAATATAGAAATGCTAAAATTGTTGCGATTGCGTAAAATGATTACTTTCTTAAATTTCATTCTTCAATCTTCCGCCCTTAAATACCCTCCAATCTCACAAACCCAAATATCCCCATGACCA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCGCTACGATATTTACCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 55669-54564 **** Predicted by CRISPRDetect 2.4 *** >NZ_SELU01000010.1 Pseudanabaena sp. UWO310 PseudUWO310_Contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================================ ================== 55668 35 100.0 37 ................................... GAATTTTGGAGCCGCCCAAATCAATAATTTCACAGCC 55596 35 100.0 37 ................................... GTGAAAACACCAAGAAGGTCTTTTCCCGATTGACGAG 55524 35 100.0 46 ................................... TCTTTCTGCCACAGTTTTAGCCGCAGCAGCGATTGTTTCTTGAAGC 55443 35 100.0 43 ................................... CCTTTTTTGAGGTAAGACTCATAGTTACATCTTTGATTAGCGA 55365 35 100.0 41 ................................... GGAATACCAGTTATATCAATTGATTCAACAGTTTCAACTTT 55289 35 100.0 44 ................................... TTTCTGTAAGACTACTAGCCTAAACTTTCTTCTTACTTCAAGGG 55210 35 100.0 48 ................................... TAACACGATTAGTGCTTGGTGTTCATCTCGGTTCTTCCATCCAGACAA 55127 35 100.0 39 ................................... TTAGCTTGAGCTTGCGCTAACATATCTGCAAATGCATTA 55053 35 100.0 42 ................................... CAAGATTTCTTGCAAAATCTGCCCTCTTGACTTGATGCCAAG 54976 35 100.0 44 ................................... CCAAAAAGCTCCATAGCTTCTTTATAAGAGAAACATTCACTTGC 54897 35 97.1 43 ............................A...... TTACCACCTCTGTCCAAAACCATAAATTCTCTCAAAGAGTCAA 54819 35 100.0 37 ................................... CCACAATAGCCCAAGAATCAAACCACTAAGAATCAAA 54747 35 100.0 40 ................................... GGCTGGAGAGACGATAGCAAATACGCCGAGAATTGACAAA 54672 35 100.0 39 ................................... TCTTTTCCATCCCAGAAAAAAATGCCTTTCAGTTCGGAG 54598 35 97.1 0 ............................A...... | ========== ====== ====== ====== =================================== ================================================ ================== 15 35 99.6 42 GTTTCACGCCTAACACCCCGCAAGGGGACGGAAAC # Left flank : GGCGGAAATGGCGGCGGCTGATCGTTTGCATGGTGAGTCTGCTGTGACTATTTTTGGGGTTGTTTCTAATGGTATAACTTGGGAGTTTGGTAAGTTGGAGGGACGAAATTTTACGCATCATCCTGCAACTTATAGTATTTTTGAGTTGGATCGGTTGTTTGCTGTGGTTAATTACATTTTTCTGCAATGTGAGATCCAGTTGGCTGGTTATTTAGGCATGGTGGCTTGACTGTTGCTAAGTTTTTACATAATTTAATGTTATCGAGCTAGACAAAAACTTGGTTTGGCAGTTATAGTTTTTGCAGTCACCTCCATAGGTGGCATGTACCTTGAAAACCGCATTATTACGTTGACCTCTGGAGGTCGCGCTCTCCATAAGGGTTTCGGCGTTTATATTTGTCTTCTTGTTGCGAATTTAGCAAGCTTATTGACTATGTAAATGACCTATGGAGATCGACCCTATTAAAAGCTTTACTGTGTAAGCCTCAAAAATGTGAGGG # Right flank : GTAAGGGTAAGATCGAAGACTGAAGATTGAAGAGGGAAGGGTAAAGAAAAGATGAGGAGTAAAAAAATATAGAAATGCTAAAATTGTCGCGATCGCAAAAAAATTATTCTTCGATCTTCCGCCTTCCGTCTTTAAATTCCCCCTCTTCGATCTTCCGTCTTTAAAATGTATGAACCTAAACACCATTCAGCAAGAAATTGCAACTTTACCACCTGAAGCACAACAAGTGATCTTCGATCTAGTAAGCGTTCTCAAAAATCGCTATCATACGAACCAACCAACCTCCGTAAAAAATAAAAGCCAAAATTGGTCGGACTTTATCGGTTGCATGGAAGCCGAACCAGACCTATCAACAAATTACAAAACCTACTTAAGCAAAGAACTCGATCTAAAATATGGTAATCGTTGATACAGGCTTCTGGCTTGCCCTTGCTAACAGCAAAGATGCCTCTCACCAAGCAGCAACAAAATTATTTCAGAGCTTAGAGAACGAAGAATTT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCACGCCTAACACCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.50,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 14876-15207 **** Predicted by CRISPRDetect 2.4 *** >NZ_SELU01000086.1 Pseudanabaena sp. UWO310 PseudUWO310_Contig_89, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 14876 36 94.4 36 .....T..G........................... CCTAATCCCCAATGGCTTTGGCGATCGCAGTATTGT 14948 36 100.0 44 .................................... CAGCAGCATAAACTAGCTGGCATGGGTAGTGGTCTAACTATCCC 15028 36 97.2 37 .................................G.. TTGAGGGGTGTTAATCTGAGCGGTGCTAATCTGAGCA 15101 36 100.0 36 .................................... AAGCGACGACGATGCTTTATCTCTTAGTGTTTTGCG 15173 35 88.9 0 ..............A.....G..........-...T | ========== ====== ====== ====== ==================================== ============================================ ================== 5 36 96.1 38 GTTTCCAATCGATCGCGTCCCCTAGCGAGTAGGAGA # Left flank : CTACATTCTTTGCCATTTTTACTTCCGCATGACCGAGGTCATGTCCTGCCCAAGACAAAACAGGCTTGGGCGTTGCGATATCTAGTTTGTGAAAAGGCATGATTTTAATTGTGTTTCATAATGTAGTATGTATACTACATTATGAAACATGTTAGCGCAATAGTTAAAAGCATAAAGTCTACGCTCATCTGGGGAATTAGGTGAAATGTCAAAATAGGAGGAAGTGATTTTCATGAATCGATAGAGATCCCATGATCAAATTTCCCCTGACAGAATTGTTAAATGAGCAAGTTATACCAAATCACAAAATGACTACGCCATTTTGTGATTTTAAAACTCTTACTGGGTTTGGTTTTCAATAGTTTTGTCTTACGTTTTTTAGGCGATCGCCTTTTCGCGCAAGTAAGAAACCAACAAAAAAGCAGTCTGTTTGACGGACTGCTTTTTTATGAGGCGATCTCAATAATGTCCAACATTGTGCCACAGACACCTGAGAACAA # Right flank : TCCATAAATTCATGTCAACAGCCAGAAACATCGCTGTGAGCTAGGGTTTATTAAGCTGAATATTTTTCGCTAATATCCAACAATCTTCTCCAAAATATTGGCGATGCAGATAATAACATTCATCAAATCCCTGTTTTTCATAGAAGGGTTTCGCTTGAAAACGAGCGAGACTCCAACACCAAAGTTTGGGTACATGCTCAGCCTGACACTTTCGGGTAGCAGCTTGAACTAATGCAGAGCCGATACCCTTGCGAGTGTGACCTAAACGACAAGCTAGGGAGACAAGATTGTAGCTATAGTCATCGTATTTTAGGATCATAGCGCCAACCACTTGCTCACTTGAGACATTTTGTCCGTCGATAAGTTCGATCGCCACTAATAATCGAGCTTCTTCTTGGCTGAGCAAAACTCCCACTTCATTAATCAACTCGTTACCGTCAAAGTTTAAGTTCTCAAGACATTCCTGTGCTGCAACAACATGCTTCTTATCGGCAATTCTG # Questionable array : NO Score: 2.78 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAATCGATCGCGTCCCCTAGCGAGTAGGAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.30,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 11574-17686 **** Predicted by CRISPRDetect 2.4 *** >NZ_SELU01000089.1 Pseudanabaena sp. UWO310 PseudUWO310_Contig_93, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 11574 35 100.0 34 ................................... CAGATGCTGCTGCTACTCCTGCCGATATAGCTAA 11643 35 100.0 36 ................................... AATTTATAATCATCAGCCCTAAGCATTGGCGCGATC 11714 35 100.0 34 ................................... TTTGCGTTGGCGAGGCAATTGTACCGTGTGTATT 11783 35 100.0 36 ................................... CAATGAACATTGAACAAGTGTTTTGTGGCGTGAAAA 11854 35 100.0 36 ................................... ATTTCAAAAAAAATCTTTATGGATTAGATGAACGGT 11925 35 100.0 35 ................................... TGAAGGATTGAAAAATTATGATTTCTGCAAATGAT 11995 35 100.0 36 ................................... GTAACTTATAGGACTAATGCCAGTGCGATCGCGCCG 12066 35 100.0 35 ................................... CAATTGGAAGGAGTTGTTACATCACCTGTAATGTA 12136 35 100.0 39 ................................... GCATTTCGCTACTCGAAGGGTTTGGTCGCTCATGAGTAT 12210 35 100.0 36 ................................... TACTTCTGATGTGGTTTCTGCTAAGGCTTGGATTAA 12281 35 100.0 36 ................................... GCAGGGAGCGGGTCTTTTGGCTCTGGGCATAGTTTT 12352 35 100.0 35 ................................... AGCAAGAGCCGAAGATACACCAGTAATAGTTCCGA 12422 35 100.0 35 ................................... TGGGGGGATGATCATGCCAAATCTTGTATCTTCAC 12492 35 100.0 36 ................................... ATTTTTGTTTGCTTCGGATGCCTAGCCGCAATATCC 12563 35 100.0 35 ................................... CCGCCTCAAGTTTTTGAGATGCGGGCTGAGATTAT 12633 35 100.0 35 ................................... GTGAGGCGATCGCCACTGTAATTGCTGATTGCATT 12703 35 100.0 35 ................................... ATTTTGGGCGTTTTTCCTTCTACCCCTTCTAATCT 12773 35 100.0 36 ................................... TAACTGCAAGATTTACTTCGTCATCTCGCTTGAGCC 12844 35 100.0 36 ................................... GAATGATTTGGATTTGCGATAAGCTTCCACATTTTC 12915 35 100.0 36 ................................... GAACTATTTAACGCCAATCCAAACCCAATCCCGATT 12986 35 100.0 36 ................................... GACTCCGATGGGTTAGCCAATGCATTTAAGCCTATA 13057 35 100.0 36 ................................... GAATAGAAGTCGAAGATCCAGTAACAGCCCTAGCCA 13128 35 100.0 36 ................................... GAAGTGATTGTTATTTCTCAGGATATGCCTGACGCG 13199 35 100.0 35 ................................... TGCTACATTTGGTTACAGGCGTAACCGCCACATCA 13269 35 100.0 34 ................................... ATTTGTAATCAGTCATGATGCGACCTCCAATAGT 13338 35 100.0 34 ................................... ACAGCACAACAAAAACTACGCATGGCAGCTAATA 13407 35 100.0 35 ................................... GCTTCCAAATTTCCCCTTGATATTATCTATGGGTC 13477 35 100.0 36 ................................... GACAAAACCAATTCTTACACGTATAGCTTCAAGCTT 13548 35 100.0 35 ................................... AAACAAGGTCTGGAAGAACAACTTGACCAAGAACT 13618 35 100.0 38 ................................... AAAGTGTACACAGACAATAACGCTACTGTTTCTGATTT 13691 35 100.0 34 ................................... CTCCTTCTGTTGTTTCCGCAACTTTTGATTGTCC 13760 35 100.0 37 ................................... CAGAATTTACGCAATAAAGCAATTAGTACGGCTCCTC 13832 35 100.0 34 ................................... TATTACCTCCTGAGTTTGCGGTGATTGCGTCACA 13901 35 100.0 37 ................................... CATCCTATACCGTTCTTTAGTCGATGGCAGATAAACT 13973 35 100.0 38 ................................... ATAAAAGCAAGACTCACAAGTCTCACGATGAGACAGAC 14046 35 100.0 35 ................................... AAAGTTAATATTCTCTTCATCAATGATTGAGATTT 14116 35 100.0 35 ................................... CTTATATTTAATACGATTACTCCAGTTGCTGCGAT 14186 35 100.0 37 ................................... TGGTTCGTGGATACACAGCCAATGTGTATTTAGATGA 14258 35 100.0 34 ................................... AGGCTAGCGCTTGGCTTAGCTATGAGCTAATCAC 14327 35 100.0 37 ................................... GATGAATCGAAGCTCACGCCACAGCAAAAAGTGCGAT 14399 35 100.0 34 ................................... TTTGGAGAGCTGAATTTTCCCTTTCTGGAGATTT 14468 35 100.0 38 ................................... TTTATCAAGCAATGCAATCGTTTAAATGCTGAATTTTA 14541 35 100.0 37 ................................... TTGAAATGCCCGTATTTGAAGTTGAGTTTGTGTGATG 14613 35 100.0 35 ................................... TCTTCAATGGTTCGGTTGGTTCGTCCTTTCCCTCC 14683 35 100.0 37 ................................... ATGTGCGATTCGTTTAGCGTCTCAAAAAACTGCCCCT 14755 35 100.0 35 ................................... TGGATGTAAGCGGCATCCCTGAAGGCACAGAAGCA 14825 35 100.0 36 ................................... AAATTACAGTACAAAATGATTCTCCGTTTGATGCGA 14896 35 100.0 35 ................................... TGGTATCTGCCTATATTGCGATCGCCGCATCGTTT 14966 35 100.0 34 ................................... ACAGCTTCTGAGTTTGCAGCTTACAAAGATGATT 15035 35 100.0 35 ................................... ATCCGAGTGATGGATCGTTGTTGCCCTTCGATTTG 15105 35 100.0 35 ................................... ATTATGAGATCTCTTTTTCTTATCACTTCCCTAAT 15175 35 100.0 37 ................................... GCGATCCTACAAAGATTCTTTTGATTATTCTTCCTCA 15247 35 100.0 37 ................................... GGATTATCTGCTGCTCCGATCCTAAATGCCCTTGGTA 15319 35 100.0 35 ................................... TATTAAATTCTCTTGCCCCTGCCTCTTTTTGTATT 15389 35 100.0 38 ................................... TATCGTGACTGAAGGAATCACTATTGGCAAGGAATTTA 15462 35 100.0 37 ................................... GACAGGATTACTCAGAGGTATGCAGTCTCGCAGTAAT 15534 35 100.0 38 ................................... AGGTGAAATAGCTTTGTAGTTGGTCAGAAGCCTCTCGG 15607 35 100.0 34 ................................... GATGGACACACTACATGAAGTAAATTGCCTTTTG 15676 35 100.0 35 ................................... TGCCAAGAAATTCAATAGATTCCTTGGAAACTTCT 15746 35 100.0 37 ................................... CCTGACGCATCGGCAACTCCCGTCAATCCGCTTTGCA 15818 35 100.0 34 ................................... TTAAACGGTAATGTTTAACCTTGCTATGTTTATT 15887 35 100.0 35 ................................... AATCAAATAATCGTATCCTGCGACATTGCCAAGAG 15957 35 100.0 35 ................................... AAGCTTTAAAACTTGGCTTTATCGTTGTTGACCCC 16027 35 100.0 36 ................................... AAGTTCTTGAGGCATGAGGATCAAGAGCGATCGCAG 16098 35 100.0 34 ................................... AAAGAGTTTGGCGACGATGCACAAACTGATTTGA 16167 35 100.0 36 ................................... TAGTTTTGAGGTAGTGCGGGTTGCGATGGGACTAAT 16238 35 100.0 35 ................................... GGTACTTGTTACCGTGGCTATGCCTTCGGCGCATC 16308 35 100.0 38 ................................... AACAAAAACGCAAGCTATCTAGTAATCGCGCTATTGCC 16381 35 94.3 35 G...C.............................. ATTTGACCGATTCGCAATCCTTTATAGATCGGGAT 16451 35 94.3 34 G...C.............................. CACCGATAAAATCCGTCGCGGAAGGCAATGGATT 16520 35 94.3 36 G...C.............................. CATTTAGAAATTGAGCGAGCCAAGCTCATCGGTTTT 16591 35 94.3 36 G...C.............................. GCAAAGCCAAGCGCGATCGCGAGAACGCTGATGCTA 16662 35 94.3 36 G...C.............................. ATTTTAAATCAATCTGCTCAATCTGCGATCGCGAAT 16733 35 94.3 35 G...C.............................. ACTGAGCAAGAATTAGCAGCCGCGAACGCAGGTAA 16803 35 94.3 35 G...C.............................. ATCGCCCATAAGCAATCCTTTCCTGAGCGCTCATC 16873 35 91.4 35 G..CC.............................. ATCGCCCATAAGCAATCCTTTCCTGAGCGCTCATC 16943 35 91.4 36 G..CC.............................. ATGTGCGAATTGATAAAAGCTTTGCCGAATATGTAA 17014 35 94.3 36 G...C.............................. TGGGGTAAAGGCGTTGTACCCGTGATTCAATCAACG 17085 35 94.3 35 G...C.............................. AGATTGTTTTAGCTTTTGAGTCTGATCATGATTGT 17155 35 94.3 35 G...C.............................. CAGATAGGTAGGGCTGTGGGTTTCATAATATTAAA 17225 35 94.3 36 G...C.............................. AATTGGGGTAAGGTTTTGCGGCAGCGATGTGCGCGG 17296 35 94.3 36 G...C.............................. TTGATGGAGATAGAAACTCCATTAACAACAAACCTT 17367 35 94.3 36 G...C.............................. AACTCACAGCCAAAAATCAGTGCCCCATCCTATTCT 17438 35 91.4 36 G...C..................A........... TATGCGATCGCACTATTCCCGCGATCGCTACTCTTG 17509 35 94.3 35 G...C.............................. ACAAACTGAGGTACTGGGAAAGGATGCCCCATCGG 17579 35 91.4 37 G...C.............................T CAGCTACCAGTGGTGGGACAAGCAATGAAGAATCGAT 17651 35 80.0 0 GG...........T..............G..AT.G | T [17681] ========== ====== ====== ====== =================================== ======================================= ================== 87 35 98.5 36 ATGTTGAATCTCTGATGCCGAAAGGCGTTGAGCAC # Left flank : TTCGCGATCCGAAACGATGGCGCAAAGCTTATAAGCTTTTGCAAGGCTATGGCGATCGGGTTCAATATTCAATTTTTCGTTGTGCGCTGAATATGCGCGATCGCGAAAAGTTGAGATGGGAGCTAGAAAAAATCCTGACGGCTGATGATAGTTTGCTTTTAGCTGGGATGTGCGATCGCTGTGTCTCAAGAATGATTTCTTGCAATCGTTCTGAGTCTTGGACAACTTCATGCGATCATCATCGGATTTTTTAGCATGGATCACCGTCTGTTTTGGGCTTCGGCTTGTCCATCAGACCTCAATGCCATTATGTGTAGTTGTTTCAACATAACTTTGGGTAACTGAGGTGCTTGTATTGTTTGTTTGTCATGCTAGGTATGAGTTTAAGGGTATTTGGCTTAGAGAAAGTTGTTAGCTTTAGTGGCGATTTATACTATTCTTATGAAGTGCTTGCAAGATTGGCTTCCGTTATAAACTCTATAAGGGTTTTGGCTGTCGCC # Right flank : TATAAGAATTTAAAGAGTATTTATAAACTCAAATTCGTTCTAGTGGAAAAAAACATGCCACAACCACCCCTCCCCCAACCCCAACCCGATCGC # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTGAATCTCTGATGCCGAAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 26094-24591 **** Predicted by CRISPRDetect 2.4 *** >NZ_SELU01000020.1 Pseudanabaena sp. UWO310 PseudUWO310_Contig_20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 26093 36 100.0 38 .................................... TGAGTAGTCATTGCCGTGTTCTCTGTTGTTTGTTTTAC 26019 36 100.0 43 .................................... TTTTACACCCAAACTGTAAGCCCTTTGGCAAATCTCTTCTAAG 25940 36 100.0 37 .................................... TCTCTTCTATGTTGGGCGGAATGCGATGGTTGGGTAT 25867 36 100.0 37 .................................... TCGCCACCGCGGCACGCCCGTCCGCGACCGCGGTGAT 25794 36 100.0 35 .................................... CTAGCGTCAAACGATTTTTTTTCAAGCTCAATTTT 25723 36 100.0 37 .................................... CGTTCTGGATGGTTCTTGCAGGTTCGCATTACATAAA 25650 36 100.0 37 .................................... AAAAACTCTAGGCAGTCAACAGTTTTAGACTTTCTGA 25577 36 100.0 37 .................................... AAAGGAAAATCAGAAACAGTCGCGTTATTGTCTGTGT 25504 36 100.0 37 .................................... ATTCTCTTTAATCTCTTTAGAAAGAGAATCGATTAGA 25431 36 100.0 38 .................................... TACATAACTTTTAACCTTTAACTCCGAACTATTTTAGT 25357 36 97.2 39 ...............................T.... TCATCTGTTGTTATGTCTGGCATAAATTTAAGGTTTAGA 25282 36 97.2 39 ...............................T.... CCCGTTTTACGAGTCTGATACGTTTAATTTGCTCGATCT 25207 36 100.0 38 .................................... ACAAACTGAGTGTAACCATCAATAGTTACTTCTTTAAC 25133 36 100.0 36 .................................... ATTCGCTCGTATTTGTCCAGTGTATTCAGCTTTGCT 25061 36 97.2 37 C................................... GTCCCAAGCTGATACTTGATTGCCTCTGTGTTGTTCA 24988 36 100.0 37 .................................... CACTCTTCAAAATCCCAAGCGCCATAGTATCTGTCTT 24915 36 97.2 34 .....................T.............. GATTGGACAAAGGTGGCTCCTGAGATTGTCTCCG 24845 36 97.2 37 .....................A.............. CGATCTGTGCGGGGGTAAGGGTGACAAGTGAGGCGAT 24772 36 100.0 37 .................................... TTTTCGGGCGCATCTATCCCGCAAAACCGAATCTTTA 24699 36 100.0 36 .................................... ACCTTAATAATTACCTTTGAATTAAGTATAAAAGAG 24627 36 77.8 0 ....................T.TT.TTC..T....T | G [24593] ========== ====== ====== ====== ==================================== =========================================== ================== 21 36 98.3 37 TCCCCTACTCGCTAGGGGACGCGATCGATTGGAAAC # Left flank : GGATCTGCCAAGTTTGGGTAAGGTTCAAGCTAAGTTTGAAGCGCTTTTCCCAAGTGCTAAGGTGATTCTGGATAAAAAAAATAATGTGAAAGAGGATGTCAAAAAGGAGATTAAAAATTTGGAGCAGCGTGGTAAGGATGAGGTCAATAAGGAAATCAAGAAGTTAGAACCGCGAGATCTAGATAGAAAAGAGTTGGATAAATTGCCAATCCGCGAACCGATTAGGGATGTTTTACCAAAACTACCTCCCCGTCCATAGTCGTTGTTTGATCGCTGATGCTTTGCTCTGCCTCGATCTGAGCCGTTTTGTATCATGGTTTTGCGATGGGTTGGCGTTTGGGGCTGAAATGACGTTTTTGCGTGTTAGCCCTCGATGCTTTGCTGGGCATGGGTTTCAAGGCTTTTTTGTGTTTGTATTTTTTGTTTTTCACCTGTTTTTTGCGGAGGGTTCGCAAATGATGTCTAGACTCGAGGCGGTGTAAGGGTGCTAATATGGGTAC # Right flank : ATCGCTCACTAGTAATGCTCCCAGTCTCGAGCATTTTTCAGAACAATATCGGAAATCTTTTCTTTGAAAGACAGCTTTTTCATACCCATACTCTAGTCATGATACTTACAGCGATCGCTTTGCAAACACCCTATTGTTTTATGCGTTAAACATAATTATTTCAGCATAATTAAAACTAAAGCTAGAGGGCGTACCAATCGCTATGCGATCGGTACAATCTTCTAAGTTTGAAGTTTACTTATGCTTAGCTACTGAGTATTATTTGAAATAATGCCAAAGCTCAAAATGGCTATACCATTTTGAGCTTGGAAACCCCTACGGGGTTTAGTTTTTAATTCACAAAATTGTGATCACACTTTCGTGAATTGGGATAAAGCATAGAGCGATCGCCCTTTGGCAAATTTGAAATTCTTGTGGGAAAAATATGCTAAAAAAATGCATCAGTTTAATTTTGGCTACCTTGCTATTCTCATTGCAAATATTTGTGAGTGAAGCTTCAG # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCCCTACTCGCTAGGGGACGCGATCGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.30,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA //