Array 1 1-749 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLFW01000100.1 Acinetobacter baumannii strain ABBL067k contig-77, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 1 29 100.0 31 ............................. TACTATTATAATGATCTAAACCCATTACAAC 61 29 96.6 31 ............................T GCAGCTACTCGACATGTTGGTAGGGCAGATG 121 29 96.6 31 ............................C AGTCGGCTGGTGCTAATTGAATAAAATCGTT 181 29 100.0 31 ............................. GATTGAGGCGATTTTTATCGCGGACATTGCC 241 29 96.6 31 ............................C AGTCCCCGCTTTGAAGCATTCCCATCAGTAC 301 29 96.6 31 ............................T CACAGCTATCGTCTGGCTGCCGTCGCGTAGA 361 29 93.1 31 A...........................T TATTATTAAACGGGAAAAGTATATTCTTGCT 421 29 100.0 31 ............................. TACTATTATAATGATCTAAACCCATTACAAC 481 29 100.0 31 ............................. TCATCAATAAGTTGGCCTTGATTTAAATAGT 541 29 100.0 31 ............................. GATACAAACGAGTTCGCATCTCGACCAGAAG 601 29 100.0 31 ............................. TTATCCAGATAAAACCATATCTACAAAGTGG 661 29 96.6 31 ............................T CAACCTGAACACAGACATACATGTTCTATTG 721 29 82.8 0 ...GC...................AT..T | ========== ====== ====== ====== ============================= =============================== ================== 13 29 96.8 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : | # Right flank : TTTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTAC # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 8580-6337 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLFW01000083.1 Acinetobacter baumannii strain ABBL067k contig-5000071, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 8579 28 100.0 32 ............................ AACTCATACAGCGGGTCCAAGAGCCTATGGTA 8519 28 100.0 32 ............................ AAGACCAGTTTTGAAGGATATTAACTTTTTAT 8459 28 100.0 32 ............................ TCGTGCTTGGGTATCACATATTGATGTGACTT 8399 28 100.0 32 ............................ CACTAATCTCTTTGATTTAATTAAGTTTCAAC 8339 28 100.0 32 ............................ ATCCGCATCATCAAAAATCGCAAGTGGGTTTG 8279 28 100.0 32 ............................ AATAACGACGGTTGCGCTGTTGCACGTTCAGC 8219 28 100.0 32 ............................ TTGATGAGAAACTGTTATTGTGTATGTCTCAC 8159 28 100.0 32 ............................ ACGACAGGTAAATTGGTTGCCATGTGTATTGA 8099 28 100.0 32 ............................ AATTGTAGAAAGCGTATCACTTATTTGCTTAT 8039 28 100.0 32 ............................ ACGGATTACCTACAGGTTTACCAGTTGCATAA 7979 28 100.0 32 ............................ TCTTGAAGGTGAGCCAACAAAAATCCATTTTT 7919 28 100.0 32 ............................ GTTTAAATCCATAAATGAATTTTGCGGTTTTT 7859 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 7799 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 7739 28 100.0 32 ............................ AATGTACTTTAATTTCCACTCGACACCAGTTC 7679 28 100.0 32 ............................ CATGACCGAAACAGCCAAAAAGGTTTTATGTA 7619 28 100.0 32 ............................ TAAAGGATAGTTAGCTGTAGGCCCTGCGGTTT 7559 28 100.0 32 ............................ TTATAGTTATGTGTGTGATATCGTTAAGCTGC 7499 28 100.0 32 ............................ TAGCACAATCCAAACCTCAATAAAAAGTAAGA 7439 28 100.0 32 ............................ GAGCCAATAAGATCGCGAAGTATGCGGAAATC 7379 28 100.0 32 ............................ ACAGAGAAAACCCCACATGTTCGAGGGACTGC 7319 28 100.0 32 ............................ ATAATTCCGCCATCCTCGGCTGAGATATGGGT 7259 28 100.0 32 ............................ TGCCGGAGCGGTCTTGTCATTGGCGAACCCGC 7199 28 100.0 32 ............................ TATGCGATTTGATAATTAAATTGCGATACTGG 7139 28 100.0 32 ............................ GAAATAAAAAACACCTGATGAAAACAGTTCAC 7079 28 100.0 32 ............................ ATAATCACGAATATCACCAGTAAACCAGTGAT 7019 28 100.0 32 ............................ TTATTGGTCCTGGTCAGTGGAATGGTGATTCT 6959 28 100.0 32 ............................ TGGGTAAAAGCCGATGGATTAATCATCTTTTG 6899 28 100.0 32 ............................ ATTAACAAGAGTGGAATTTATTGAACTATTAA 6839 28 100.0 32 ............................ TCTGGGTTCTTTTCGCGTGTATGGGATACTTG 6779 28 100.0 32 ............................ TGTAAAGTCATTCGTAATAACCGTTATACGGC 6719 28 100.0 32 ............................ AAAACCAATCAAATAACGGTTATGTGGCCACA 6659 28 100.0 32 ............................ CATAGCGACATATAGTTTTGCCCGGATCTGAT 6599 28 96.4 32 ..................A......... TGTTTCGCGTTGAGGTCCGGGTAATCGCCTAT 6539 28 78.6 27 ....C.....CTCC..........T... GTCTTGTATCCTGATTTCAAAGATTCA 6484 28 92.9 32 ....C....T.................. ATATCACGCGCCATTGCAAGTTTTCTACCGAT 6424 28 89.3 33 ...A........CC.............. TGATCTTTAAGATTAAGCATCCGTTCTGTTTTT 6363 27 85.7 0 ...TG.......C...........-... | ========== ====== ====== ====== ============================ ================================= ================== 38 28 98.5 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCTTCATTTAATAAAGTTCGAGCACTGAGATAGGGTAAATCAAGTGCTTGTTGTTTACTTAAACGAATTCCACCTTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGTACCGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACACATTATTTGAAAAATGAAAGTATTGAAGGTGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGACGATTAGGTTATATTTTTATAAAATTAGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : GAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCAATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCTACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTGGGAGCAAAACATAAATTTGCACACGATGGTGCATACCCAGTTGCATCGACTAAGAAACAGCAAAAGTTACTCATGCTTGATGAGTGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGAGACATGCATGATATTGGTAAGGCA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 13670-17539 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLFW01000083.1 Acinetobacter baumannii strain ABBL067k contig-5000071, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 13670 28 100.0 32 ............................ TTATTGTGAGCACCTTGATTGCTGTGCGCTGC 13730 28 100.0 32 ............................ TACAGCGGGAAACTTGAAAGTCATTGCGAAAT 13790 28 100.0 32 ............................ TGATTGCCCCCTGAGGAAACTGTATAAAGTCC 13850 28 100.0 32 ............................ AAACACCAACTAAGCCATTCCCTATTCAAAAA 13910 28 100.0 32 ............................ ATGAACTTTTAATGGATGCATGCGCCGCCCAC 13970 28 100.0 32 ............................ ACGAACAACGATAATTTGGAATACACGCTCAT 14030 28 100.0 32 ............................ TCAGGAGAAAGATCGTTCAAAAGCTCAAAACC 14090 28 100.0 32 ............................ TGAAAGTTTTGATATCCACTCTGCTGTTTCAA 14150 28 100.0 32 ............................ AGATGGTAAGAAAATTATTGAGTCTGGAGACA 14210 28 100.0 32 ............................ CGACAGTCCAGTTGATCAGATCTTGATTAGAC 14270 28 100.0 32 ............................ AATGACATGGTTCAACAATTAAATTCATCTCA 14330 28 100.0 32 ............................ GTTCTTTTCTGCAATATGTGCCATTAGGTATT 14390 28 100.0 32 ............................ ATTTTAGATGAAACAAAAGATAGCAGGATTAT 14450 28 100.0 32 ............................ AGACCAAGCGGATTGACCGTATTGATAAATAA 14510 28 100.0 32 ............................ TTCTGCAATACAAATCACTGGATCAGCCAGGT 14570 28 100.0 32 ............................ TGAGTCTTTGATTTCCCAAATATTACTTGAAA 14630 28 100.0 34 ............................ CCTGAAAAATTTCACTGTGTCCATTTCGTTATTA 14692 28 100.0 32 ............................ TATGTCTTTAAATTCTGAAAAAACACTTGTTC 14752 28 100.0 32 ............................ GAAAAAATTGAAAACTTTTTAGAAGTAAATGA 14812 28 100.0 32 ............................ GCCACACATGCCTAAAAACGCAAGTGCGCTCG 14872 28 100.0 32 ............................ ATTATCAGATAAGCCTTTTATGAATGATCGTT 14932 28 100.0 32 ............................ ATTAGCTATTAGCTTTTTGGCAACAACAACAG 14992 28 100.0 32 ............................ AGTTCATGAAAACAGCTTTAAAAAGAAAGCAC 15052 28 100.0 32 ............................ TCCGAAGGTAGTGAAGCTGTGTGTGAATTTAC 15112 28 100.0 32 ............................ TTGCAAGCTCGTCTAGCTAAAGTAGACCCTAA 15172 28 100.0 32 ............................ TGGTACGACAACTACGAAAAGCTGAGCAAAGT 15232 28 100.0 32 ............................ TCAACTTAAATGGATGCTCCCCGCGGTGAATT 15292 28 100.0 32 ............................ TTGATTGCTAGACGGATTTTTAGGCAGATCAT 15352 28 100.0 32 ............................ GAGTTTAATGCGCTATATGGCGACGAGGATTT 15412 28 100.0 32 ............................ CATGCAATCGCGTTGATTACCGCAGCTTCGAA 15472 28 100.0 32 ............................ ATGAGCCGCAACCATACGGTCTATGACTTCCA 15532 28 100.0 32 ............................ ATAGCGCCCTGCTCTATGTTGTCACTTCCGAA 15592 28 100.0 32 ............................ TCCAAGTGAATCGGCTCCTAATGCAAATGACC 15652 28 100.0 32 ............................ TGAAAACCAATATGCTGCCTAATTGCCATAAG 15712 28 96.4 32 ....A....................... GATCTGCGTCCATTTGTACTTGCTGCGGGTGC 15772 28 89.3 32 ....T.......AT.............. ATATACAGCACCGCTTAGTGCGACGCGGTCAT 15832 28 89.3 32 ....T.......AT.............. GCCCACAGGTTGAGCATCAACGGCCATCGAGA 15892 28 89.3 32 ....T.......AT.............. ATCATAGAGCTCACTTTGTCGTTGAGCCTGCA 15952 28 89.3 32 ....T.......AT.............. AGAAGGCCCGTAATTTAACTGTAAGCCGTGGT 16012 28 89.3 32 ....T.......AT.............. TCTTCCTGAGTTTTAATCCCATTTGCCTTACA 16072 28 85.7 32 ....T.T.....AT.............. CATCTTCGCCAATTGCTTTTGGAGAGTTGCTA 16132 28 89.3 32 ....T.......AT.............. TTCAGGGAATTATCGTGAAACTTTCATTGACT 16192 28 89.3 32 ....T.......AT.............. TGCACCAGCTGCTGGCTGGTTGAAATCTGCAA 16252 28 89.3 32 ....T.......AT.............. AGAAGGTGCAGAGTTTTGGGACTTTGGGTGGT 16312 28 89.3 32 ....T.......AT.............. TGTTTCAAAAGCTACACCATCAAAACCATTGC 16372 28 89.3 32 ....T.......AT.............. TATTTAAGTAATAAGTTTAATAACGACCTAGT 16432 28 89.3 32 ....T.......AT.............. AACACGTTCTCTATATCGCTGTTTGCGGTCAT 16492 28 89.3 32 ....T.......AT.............. TTCAGTTGGATATGCCTTTGATACCAAGAAAC 16552 28 89.3 32 ....T.......AT.............. GCCTGCAGACACGGATTTACGCAGCTGATCGA 16612 28 85.7 32 ....T.......AT...........C.. TAACCAAACTATGTCATCGATCGGAGATTTCA 16672 28 89.3 32 ....T.......AT.............. TTAAAATAAATGCCTGTGGTTTTTTCTTAACT 16732 28 89.3 32 ....T.......AT.............. AGTTTCCGAAGTTGAATTACACTCGCCAAGTT 16792 28 89.3 32 ....T.......AT.............. TAACACAGTGATTTGATTACCTTGAGCAACCC 16852 28 89.3 32 ....T.......AT.............. ATCTTGATGCCGAGGTCTTTAGCTTCTTGAGA 16912 28 89.3 32 ....T.......AT.............. TCATCCACCTTTGATGAAACGGATCCACGCAA 16972 28 89.3 32 ....T.......AT.............. TCTTGTGTGACGGCCTCCACTCCAGATCCCGC 17032 28 89.3 32 ....T.......AT.............. TTAAGCTTCAAAAATAGCCATTGATTATAAAA 17092 28 89.3 32 ....T.......AT.............. TGACAACTTTCCACGGCAATCAGGGCTTTCCA 17152 28 89.3 32 ....T.......AT.............. TAAAGATGCACGTGGCCTAATGCAAGTTATTC 17212 28 89.3 32 ....T.......AT.............. TTTAAAATTAGGTGCTGAGTTACCACGGCTCA 17272 28 89.3 32 ....T.......AT.............. TAAACCAAGAACTTGAAGATTTTGATGCTTAT 17332 28 89.3 32 ....T.......AT.............. TAAAAATAGTGTGTTAATTATTTATGATGAAA 17392 28 89.3 32 ....T.......AT.............. CGTATACATGCACATCAATACGATATCCCGAT 17452 28 89.3 32 ....T.......AT.............. ATACTATTATAATGATCTAAACCCATTACAAC 17512 28 89.3 0 ....T.......AT.............. | ========== ====== ====== ====== ============================ ================================== ================== 65 28 94.9 32 GTTCGTCATCGCCCAGATGATTTAGAAA # Left flank : ACGTTGGGCCAAAACGCTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGTGATGAAGGCAAAAACTCTCATGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCTGATCTAGTTAAAGATGCTTTTGTAATGCCACTCGCTTTTACATGTGCAGCAAGAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACTTTTAACCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : | # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Alternate repeat : GTTCTTCATCGCATAGATGATTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCGTCATCGCCCAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //