Array 1 44135-42515 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYQM01000024.1 Streptococcus agalactiae strain GCH33 24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 44134 36 100.0 30 .................................... ATGCGGTCACTCATATAAGACATCTCCTTT 44068 36 100.0 30 .................................... CCCAGTTGCAATGACTGCGCCAGAAGTCGG 44002 36 100.0 30 .................................... TAATGGTTTATCTCTTTTTTCATCTGTTAT 43936 36 100.0 30 .................................... AATTATCAATGTTTACAACTGTTTTAGTTT 43870 36 100.0 30 .................................... TAAAATCCTGAAACAGAATGGGATTGATAT 43804 36 100.0 30 .................................... AAAATCAGAACGCCTTATTTGAAGCAGTTA 43738 36 100.0 30 .................................... CCGTTCAATCTGTTCTTGCTTTTGGTCATC 43672 36 100.0 30 .................................... ACACCGTTGCGGTTGTTGTCGGTCACTCAA 43606 36 100.0 30 .................................... TCTATTAACAATAGTTTTATCCAATTGTTT 43540 36 100.0 30 .................................... TGAAAACAAGCGCAAAGCTGTCAGAAAACA 43474 36 100.0 30 .................................... AGTTATCAATGCTATATGGTTTCTCATCTT 43408 36 100.0 30 .................................... GTTTAATTTTGAATAATATCATGTTTACTC 43342 36 100.0 30 .................................... TATGTCATTGTGATTGTGGGAATACTTGTG 43276 36 100.0 30 .................................... GCGATGATGGTAAGTCATCATGGACAGCGT 43210 36 100.0 30 .................................... TTTTACACACGATGTCAGATATAATGTCAA 43144 36 100.0 30 .................................... AGTACTGCACTAGGAATTGTAGAGATCAAA 43078 36 100.0 30 .................................... CGTACCATCTATCAATTTACCGCAAGCTGT 43012 36 100.0 30 .................................... CCGATTATTTCCTACATAATACGCACGTTT 42946 36 100.0 30 .................................... TTCTAAATGCTGGTGACTGCTTTGCATAAA 42880 36 100.0 31 .................................... TTGCTGCTAGACCCAAACAGTTTATTTTTAG 42813 36 100.0 30 .................................... TCCTTTTTTAGATAATGTGCGATCACGGAC 42747 36 100.0 29 .................................... TTTTACCAATGCTTCCATATCGCTTATAT 42682 36 100.0 30 .................................... TACTTGACGAATTGAAGATGACGGAATTTA 42616 36 100.0 30 .................................... TGGTTATACATTTACTAATCCATCAGCATT 42550 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 25 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTAAGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : AAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //