Array 1 399127-401398 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKQH010000001.1 Campylobacter concisus isolate MGYG-HGUT-01392, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 399127 30 100.0 34 .............................. TTTTGCCGCTACCAATAGTCGCCCTAAAGCTTGC 399191 30 100.0 38 .............................. GCTTTAGCGTGAACGATGAGTCCTTGCAAGATATAAAA 399259 30 100.0 37 .............................. CTTGTGATACAACTTGACTGGCACGGAAACGCCTTGA 399326 30 100.0 36 .............................. TAAAAAGGAATAAAAATGCCACTTCAAAAAATCGAA 399392 30 100.0 38 .............................. AAAGCGTCGAGCCCTACGGTTTCGTCGATAAATTTACC 399460 30 100.0 34 .............................. TTGGCTAGACGATACCATAGAAAAACCGACAGAA 399524 30 100.0 35 .............................. AATGATGTAGCCACTAACATATTAACACAAAAAGG 399589 30 100.0 35 .............................. CCGAAACAAGGAACAATGCCTAACTTTGCGTGTGG 399654 30 100.0 37 .............................. AACGCTTACAACAACGGCTGGATAGCCAAACGCTATA 399721 30 100.0 38 .............................. ACCAAATACGGACAACGCTACCTAGAGCTTAAAAAGCT 399789 30 100.0 35 .............................. TTACATAGGGCTTGGTATTTTCTTTTTGTACACGT 399854 30 100.0 36 .............................. TAACAATGGTAGATACGACGCGCAAGGCGCTTTTGA 399920 30 100.0 39 .............................. TACGTGTCCGAGGCGAAAAAATGTATCTTTGCCGTCGGG 399989 30 100.0 36 .............................. ACAGCCCTAAAAACGCACTACACAAAAACCCAAACG 400055 30 100.0 36 .............................. GGCGATCATTTATCGGTAGGCGTGAAGCAACGTATT 400121 30 100.0 35 .............................. GTTTTTTACATCAACGCCCATAAATCCGCTTATCG 400186 30 100.0 37 .............................. GCAGAGGCGAGTATCTCGATGAGCTTGTAAAACTAAT 400253 30 100.0 34 .............................. GACGAAAGCCCCCCGCTAATAATATTTGCCGTAA 400317 30 100.0 36 .............................. ACAGCCTTTGTGCCAAATTTAATCTACCCATAATCA 400383 30 100.0 36 .............................. GCGACATCTTCTGGGACGTATTTACCAGCTAGTGCT 400449 30 100.0 35 .............................. TGTTGCTAGCGGTAAAAGATAAAAAACTAAACCCA 400514 30 100.0 35 .............................. TTTCGTCAAGCCTCATAGCGTCCCAATAGTTAGCC 400579 30 100.0 39 .............................. GTGCGTTGCTGTGCTACAACTGGGTCTTTCCAGATGCAT 400648 30 100.0 35 .............................. CAAATGGAGCGTGGCGTGGATAAGCGAGTATCTGG 400713 30 100.0 36 .............................. TCCCAGTGGCAAGGTCTAGCGTGCAGAACTCTAAGT 400779 30 100.0 35 .............................. TGGTAGTGAAGTTTGGGTGCAAGGCAAAGAAAATC 400844 30 100.0 37 .............................. TTAGGTACGCAACCAGCAGCAAATAGCGCGCCAACTT 400911 30 100.0 36 .............................. TCATTTGACAAGATCATCCTTGAGCCTCATACGTTG 400977 30 100.0 34 .............................. CCATATAATCCACCAACAGGTGTCGTACAATTTA 401041 30 100.0 38 .............................. TAAGTGTCGTTTGCATCTTCAAACCACCTAAATATCTT 401109 30 100.0 35 .............................. GGATAGCAGCATAAAGGATTAAGAATGTTTATAAA 401174 30 100.0 36 .............................. GCTCGCTTTTTGGACAGAGTAGTGCCACAAAAGAGT 401240 30 100.0 35 .............................. TCAAGTGCGTCGTCGATCTCTTCAATTTGACTAAT 401305 30 100.0 34 .............................. CTTTCTATACCCCTTATAAACTCCTTTCAGATGG 401369 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 35 30 100.0 36 ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Left flank : GAGCTAGATCCTCGCATCGGCTTTTTGCACGAGCCAAACTACCGCGCGCTAAGCCTACATCTCGATCTTGCGGAGATTTTTAAGCCGATCTTGGGAGATACGCTGATTTTTAACATGCTAAATAAAAAAGAGATCACCGCAAAAGACTTCCAAACGGACGCTGGCAGGATAAAATTTAGCAACGACGCCGTGCAAAAGATCGAGCTAAAGATGATCTCGCGCCTTTGCGATACGCTCACGGTGGGCGGTAGGGAGCTAACGTGGAGGCAGGTGATCCGCCGCGAAGCAAATAAGCTTAAAAAGTGTATCTGCGAGGACGCGCCTTATGAAGGCTTTAGGTGGGAGTAAAATCGCATTTTAATAAAGCGTTTTTTAAGATTTTAAAAAGCTTGAAATTTAGGGCTTGGCGTATTTATACATGGCTAAAATTTAGTCAAATTTAAGGCGAAAAAATATAGACTTCTTGCATCAAAAGGCCTATAAATCAGCTTTTTGGTGCT # Right flank : CAACGCATAAGCGACAAATTTAAAAGTCAAAAATTTTCAAAAAAGAGATTTAAAATAATAGATCGAATAAATAATAATTGCTATCTTGCAAAGATGTATCAAACAAACGATAATACTGTTTTATGCAGATACTTCGAAAAACCAAAACCCCAGCAAATACAGCAAAAAAAGAAGCTAGAAATAATAATGAAATAGACTAAGCATAAACAAGCTTAATATCAAGAGCATTCACAACCTTAAATATACTTTCAAATCTAGGCTTTGAATTCTCTTTAAACATCTTATAAAAGCTTTCTCTATTTAAATTTGCTTTCTTTGCAACGTTTTCAATACCTTTTGACTTTGCTATATAAAATAATGCTCTTTTAAATTCTTCAATATCGCCATCGGCTAAGACTTGATTTAAATATTCTTTTCTTAATTCATCAGTTGTTAAGTAGTCTTCTAAATTAAATTTTGTAAATTCTTCTTTCATCTATAATCCTTTAATATCTCTTTTG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [65.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA //