Array 1 171119-173100 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZPI01000006.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712437, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 171119 29 100.0 32 ............................. GTCACCTAGTGCCTCCGATAAAACCCACATAT 171180 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 171241 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 171302 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 171363 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 171424 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 171485 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 171546 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 171607 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 171668 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 171729 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 171790 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 171851 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 171912 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 171973 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 172034 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 172095 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 172156 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 172217 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 172278 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 172340 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 172401 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 172462 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 172523 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 172584 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 172646 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 172707 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 172768 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 172829 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 172890 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 172951 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 173012 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 173073 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 189608-191955 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZPI01000006.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712437, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 189608 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 189669 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 189730 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 189791 29 100.0 32 ............................. CCCGCATTTCTCGGTGATCGACTTTGTAACCT 189852 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 189913 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 189974 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 190035 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 190096 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 190157 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 190218 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 190279 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 190340 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 190401 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 190462 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 190523 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 190584 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 190645 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 190706 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 190767 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 190828 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 190889 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 190950 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 191011 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 191072 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 191133 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 191194 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 191255 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 191316 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 191377 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 191438 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 191499 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 191560 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATCCGCACTGCCT 191621 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 191682 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 191743 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 191804 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 191865 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 191926 29 93.1 0 A...........T................ | A [191952] ========== ====== ====== ====== ============================= ================================ ================== 39 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //