Array 1 49504-49804 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_AJGU01000018.1 Treponema sp. JC4 contig00018, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                	Insertion/Deletion
==========	======	======	======	====================================	===============================	==================
     49504	    36	 100.0	    30	....................................	AATATTCATCGGGACGAATAACCATAACAG 	
     49570	    36	 100.0	    30	....................................	ATTTCATATTAAAAATGTCAGATTAGAAAA 	
     49636	    36	 100.0	    30	....................................	CCATCGTTGTCATGTAGTTTTAATTCATTT 	
     49702	    36	 100.0	    31	....................................	GGAAGTCAAGATCTTTTATATCAGCAAGCTA	
     49769	    36	 100.0	     0	....................................	|                              	
==========	======	======	======	====================================	===============================	==================
         5	    36	 100.0	    30	GTTGCAGGTTGACCGGAAGAATTAATCAGTTATAAT	                               	       

# Left flank :   AACCTCATGGAAGGTTAATGGTTTGTCGGAGTAATTAATCAGTTATAATAATTCAAGTGGGCAACAGAAGCACAATTTAGTTGCAGGTTGACCGGAGAAATTAATCAGTTATAATGCATGGGCGCGGATAAGGATTTTGAGTCTTTTATCATCGGGCTTTTAATGAGGTTGTAAAATTATGTTTACGATTAAGGGAATAATAGACGGCGAAGAATTACGACTCACCTATAATGACGGCGAAATATCGGGCGACTCTAAAGCAATAGCAAGGACGCTTACAGAAAATCGCAAAGACTACGGATATTTAGGACTATTCCCGGACGCGACAGACCGTAATTATTTAAACGAGGAAGTACCGGCTTATTATTTAATTTATAATCATGTATTCGAGAAAGTGACCGAGCACCGTAAAGACTGGCCGCCCGAAGATATAAACGCAGTTTATTAAATCTACAAACAACCCCACCAACGCCAAAACAACGCGCGAGTTTGGCTTTTTT
# Right flank :  CTTTT

# Questionable array : NO	 Score: 6.06
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGCAGGTTGACCGGAAGAATTAATCAGTTATAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:63.89%AT]
# 	Reference repeat match prediction:         F [matched GTTGCAGGTTGACCAGAAAAATTAATCAGGTATAAT with 92% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-1.30,-0.80] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: F [60.0-6.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.14,0   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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