Array 1 13161-10262 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHGC01000013.1 Salmonella enterica subsp. enterica serovar Albany strain CVM N45398 N45398_contig_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 13160 29 100.0 32 ............................. CGAACACTGGCTTAAGTGCCATTGCTGGAAGT 13099 29 100.0 32 ............................. CGTCATCATACCAACTGCTGGTCGATACGATT 13038 29 100.0 32 ............................. ATAACAGCGGCCACAATATAAACAATGGTTAA 12977 29 100.0 32 ............................. CATTCTGACTAACGCCACCACAATTGCCGCTA 12916 29 100.0 32 ............................. ATGTCAGCGCAGGAGATGGCGGCGACTGCTGG 12855 29 100.0 32 ............................. CGCCGCCCCCATCACAGCACCCCGGCCAGCTT 12794 29 100.0 32 ............................. GTCTTGAGCAGTGGGCGCAAGAGTCTGGTTAT 12733 29 100.0 32 ............................. GAATCGCGGGAATTAATATTAAATCTGGCGTC 12672 29 100.0 32 ............................. CGGGCATTTGCCCGCTTTTCATTACAGTGATT 12611 29 100.0 32 ............................. TTCTGGCAATGGTCTTATTTTTTGAGGTTTAG 12550 29 100.0 32 ............................. GTCACGTGCGGTTATCCTGCAATTTCTGACGA 12489 29 100.0 32 ............................. GTTTACAGCCTGAGCAATGCCGGAATGAATGA 12428 29 100.0 32 ............................. TATTTCAATATTCATTCATTGCAGGCGTAGGA 12367 29 100.0 32 ............................. ACGCGAGCGCCGGTAGTCAGCACATCATTAAA 12306 29 100.0 32 ............................. CATAACCATAACCAAATTGGGTTAATGGCGCC 12245 29 100.0 32 ............................. CCAGCCTCTTCAACGAGTTCGAGAAACGCGGT 12184 29 100.0 32 ............................. TCTGGTCGTCCGAGGCTGAGGCCGAGTGGCTG 12123 29 100.0 32 ............................. CGCACCTGCCGGGACATGACCCTGCCGGAGCT 12062 29 100.0 32 ............................. GCGTTTAAACGCTTTTTTGATATCGGCTTCAG 12001 29 100.0 32 ............................. TTAGAGTTGAAATTGATGGCATTGAACTTGGC 11940 29 100.0 32 ............................. TACCAAAGATACCGCCGCGCTGCTTTCTGGTA 11879 29 100.0 32 ............................. GCATTGCCTGGCTGAGTCCGTCGCTAACTGCG 11818 29 100.0 32 ............................. TAGCTTCTTTGTTCGTGCGGGGCGGATTATGC 11757 29 100.0 32 ............................. CATAATTTACGCGGCCCTTTTTTGGTCACCCA 11696 29 100.0 32 ............................. CGAATAAACAGGCCTGTAACGCGCTCCAGCGT 11635 29 100.0 32 ............................. GCTCCGCCTTGAAAATAACATCTGACATTGTG 11574 29 100.0 32 ............................. TGCCGGGGTTCTGCAGTCTCTATTTTCCTCGC 11513 29 100.0 32 ............................. GAGCTGATAGAGGCCAACCCGGACGCAAAAAT 11452 29 100.0 32 ............................. TGCACATACATCCTCACTTACTGGGTCTGACA 11391 29 100.0 32 ............................. AGCTGTTCGGCGTGGCGGCGTAGCGCCTCGGG 11330 29 100.0 32 ............................. CTGCTGATGTAATGGCCGACGCAGATGCTGTG 11269 29 100.0 32 ............................. AAAGTTGACACAATAGCGAAATCAATTACTGA 11208 29 100.0 33 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCCC 11146 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 11085 29 100.0 32 ............................. TGATCCAGCCACTTAAACAAAATGATCCACAT 11024 29 100.0 32 ............................. GGCCACACCGACAACCGCAACGGATACAAACA 10963 29 100.0 32 ............................. CAGCCGGAACGACAGCAGCGACAGCGACGTGG 10902 29 100.0 32 ............................. ATATTATAAAAAAAATAATAACCTCTCAGAAA 10841 29 100.0 32 ............................. GTTTGGTTCATCCTGAACGGCGTTCGTGGGGA 10780 29 100.0 32 ............................. CGCCCGCATGATGGCGCGGTTACTTAATGTCA 10719 29 100.0 33 ............................. CGGTATGCTATTGACAGGAGTGAGATTTTAGAT 10657 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 10596 29 96.6 32 ............T................ TTGATTACAGTAAAATTTACGTTTATTCAGTC 10535 29 100.0 32 ............................. AAATCTCCACCGTGGATATTTCGGTTATTGGT 10474 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 10413 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 10352 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 10291 29 100.0 0 ............................. | A [10264] ========== ====== ====== ====== ============================= ================================= ================== 48 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 31576-29718 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHGC01000013.1 Salmonella enterica subsp. enterica serovar Albany strain CVM N45398 N45398_contig_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 31575 29 100.0 32 ............................. GATATGGGGCTTGATCTTGATTTATTTAATAC 31514 29 100.0 32 ............................. GGGATTGCGGGAATTAGTATTAAATCCGGCGT 31453 29 100.0 32 ............................. GAATTGCGGGAATTAATATTAAATCTGGCGTC 31392 29 100.0 32 ............................. ATAATCAGGTCGTTAATATTTTTGGTCGCCGC 31331 29 100.0 32 ............................. CCCACGCGGCACAGCTGGCAGAGGACGAAATG 31270 29 100.0 32 ............................. CGCTGGTGTACGACATCGCCGACATGATCAAA 31209 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 31148 29 100.0 32 ............................. TTGCGTCAGGTCGTCGTTTTTTGAGAACGCCA 31087 29 100.0 32 ............................. CTAAATAAAACCTGTAATTGCTCCCAATCGTA 31026 29 100.0 32 ............................. AGGGGCAGCTCCTGGTCGATGAGGTTCTTGAG 30965 29 100.0 32 ............................. CCGTCGGCCTGACAGCCACAGCAGTCAATACA 30904 29 96.6 32 ............................A TGCTGGTCACGCCCGGTTTAGCGGGTAAATTC 30843 29 100.0 32 ............................. TCACGGGGTCCGACGCGGATGTAATGAGTTAT 30782 29 100.0 32 ............................. GCGTTGGCGTCGCCCAACACCATCGCCGGGGC 30721 29 100.0 32 ............................. TTACTGGAACTGTCACTATACGTGGAACGTCG 30660 29 100.0 32 ............................. ACAACCGTCGTTTTCTCCACGACGTCGAGAAG 30599 29 100.0 32 ............................. ATCTCCGGCACGTGCGATAACGGGTCTGATTA 30538 29 100.0 32 ............................. CGACCCAGCGTTACGCGGTAATATTTCGCACC 30477 29 100.0 32 ............................. GACGTTGATTTACACGGCAAAGATACGGAATC 30416 29 100.0 32 ............................. GTACTGGCCTATTCCACATACAGTGGCACGCG 30355 29 100.0 32 ............................. TAGCTTAATCACGGTGCGTCCCTCCTCCGTTC 30294 29 96.6 32 ...C......................... ACCTGATTGAGGTAATCATGAAAAAAATATTA 30233 29 100.0 32 ............................. GCTGGAGCGCAACTGCCAGTGACTACAGAAGC 30172 29 96.6 32 ............T................ AGCACGCCACAGCGCGTAACTGTCGCAATAGA 30111 29 100.0 32 ............................. CGTCTTATCAGGATACCTGCAAACAGATGTTG 30050 29 100.0 32 ............................. ACCCCCCATTTACTGTTATTGTAGGGATAGCC 29989 29 100.0 32 ............................. CGAGCGCGGAATGATTTTTAACGCTGAGATGG 29928 29 100.0 32 ............................. GCTGGAATGGTACGGCTTACCAACTTCCCTGA 29867 29 100.0 32 ............................. TGTTTGCCATTCTCTCGCGTGCTGAGGGAGAC 29806 29 100.0 32 ............................. ATTTGCGTCAGACTACCGACAGGGGCTGGTAT 29745 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //