Array 1 189512-188957 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGCK01000006.1 Leptolinea tardivitalis strain YMTK-2 contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 189511 36 100.0 36 .................................... GATACCAAAAAGTTGATTAAGCGTAAGTTCTCGCTG 189439 36 100.0 35 .................................... GAAACGAATCACATCAATCCGGTTATTCACAATTG 189368 36 100.0 40 .................................... TTACCGCTATGAGCCACAAGGCTCCAAGTAATCCATCTTT 189292 36 100.0 39 .................................... CTAATTCTTCTAAATCATTAGACAACTGCCCCGGGTTGC 189217 36 100.0 41 .................................... CCTCTTTGCTCTGGCCGTAGACCCGGTATGTCTACGGTCGT 189140 36 100.0 41 .................................... GGACAGCGGGGCTTACTAAGAGCAAATTCCGGCAACCGCTC 189063 36 100.0 35 .................................... GACGACCAATTTTGTACAGTGATTCTAAGTCATCA 188992 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 8 36 100.0 38 GTTAAAAACAATAAATGCCCGTCAGGGCATTGAGAC # Left flank : GGTACACTCACCTTCCTGGTGCTGCCGGCCGCACTGGGACACACCGTAGCCCGTGATTCGTTTTCCGCTGGGTTTGATTTCACCGGCTGGTGGAAAATCTTCCGCGCTAACACCGGAGGATTTCTCATTGCCCTGCTGGTGATCACCGGCCTGATGGGGTTGGTTTACATTGTCAGCCAGATTTTTTCCATGACCATCGTGCTGATCTGCCTGATCGTCCTCCTGCCGCTGGCCGTCGGTTTCTACGTTATGCTGATTGGCGCCGCGCTGGTGGCCGGGGCGTACCGCGAGGGGGTGGAAAACCTGGAGCTGGCCGAGCTTAAGCTGGCGGAAGCCAGTATAGTTGCGGTACAGGAGGAGAAACCCTCGTGATGACATTCGATGCCAGATATCCCGTAATCTTTTCGCGCACCCCCCCTCCCAAAAATGGAATATCCGGTATAATTTCCATGTGGGGTGCGCGTCCAGAGGAATATATTAAAAGAAAAGAGCGCATCACG # Right flank : ATTGCCTTGAGTGCCGTACCGTTGATAACACAGCACAATTCTTATAGGGTGGGTTGAAGGCACATTTGAAAACCCTGTCCATTTGAAAGAGCTTTGCCAAACATGGAGAGCCTTCAACCCACCTGATTCTGTCCATTCGATCCATGTCAAAATACCGGGTGACCTGTCAAACGGGCTTTTTTCATCCAAAAGACCACCGGAAAGAAATTAATAGGGTGGGATCAAAAGCGATCCCACCCTATGAGACTTCAACCCGTATACCGGGTGACCTTTCAACCAGGCGTCTCGCTCAACCATGTGGTCATCGGATAAAATTAATGTGGTGGGATCAAAAGCGATCCCACCCTATGAGATTTCAAGCCACATACCGGGTGACCTGTCAAACGGGCATCTCGCTCAACCATATGGTCATCGGATAGAAATTACTATGGTGGGAACAAAAGCGATCCCACCCTATGAGACTTCAACCCGTATACCGGGTGACCTGTCAAACCAGGCGT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAAACAATAAATGCCCGTCAGGGCATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.90,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 279984-281271 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGCK01000006.1 Leptolinea tardivitalis strain YMTK-2 contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 279984 36 100.0 37 .................................... AGATATTCCGTGGGATGACATTGCGTCTATGATTTCG 280057 36 100.0 38 .................................... AATTTCTTGTTCTACGCAAATTGATGCAAACCACATTC 280131 36 100.0 36 .................................... TTCACATCCAAAATAGATAATCTTATTGATATCAAA 280203 36 100.0 44 .................................... TCTGCAATGGGAAAGAAATAAGCTCCCCGAAGAATACCACATTC 280283 36 100.0 40 .................................... TTTTTCGCTTGTACGTGCGTCACCTTTCATAGCGAAAAAT 280359 36 100.0 38 .................................... ATAGATGGGAATGAGCACAATGAAGGCATCTGAGAATA 280433 36 100.0 39 .................................... TTCATCAGTTGTCAATTCTGCTGTCATATTCCCGATGGC 280508 36 100.0 36 .................................... AGAAAAACTGTACTTCGTTCCCGCTTTCGTAGCTAA 280580 36 100.0 36 .................................... AAATACAAGCAATGACATCGGATTTTTCCCGTCTGT 280652 36 100.0 40 .................................... CTCATCATTCATTTCGCTGCAATCACCCATTGCAGCGCTT 280728 36 100.0 41 .................................... ACAGTACAATCCATTCCTCTAAGCTCACTTTAACCTCCTAG 280805 36 100.0 33 .................................... GAATACTTTCATCTTGCCATAGACACCATAGAT 280874 35 97.2 33 ........-........................... CCAATAAATTTGACTTCATTGGCCTTCAGTTCA 280942 36 100.0 38 .................................... GCGTGTTCCTTTGTCTAATTCGTCTAAATCGTTAGACA 281016 36 100.0 37 .................................... ATATGCCTCCCTGAATTGCTCAATCGAATCTGTTCTG 281089 36 100.0 35 .................................... CTGTTAAAAAGTCGAATCCATGTTTCCCTATCGCC 281160 36 97.2 40 ...................T................ TGAGTATGAAGAAAAGGAATATCAAACCCAACTCCATTGT 281236 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 18 36 99.7 38 GTTAAAAACAATAAATGCCCGTCAGGGCATTGAGAC # Left flank : GCGGGCGCTCTACCGCAGGAACGGTTTTGAGGTCTGCGGTCCTTTCAACGGATACACCGATGACCCGAACAGCGTCTATATGACGAGGGAGATTTAGGATCAATCTACCGCAGACCGGTCAAGGCGGCCGTCCTCCTGGCAGCTGCTGGTGTTGGGGGAGTTTATGAAGGCTGTGAGGGGAAAATTAGGGGAAATGGAGGCGGATACAGCGAAGGGAGAAAAGGCTGGATGTCTGCCAGAGTGTTTTGTGGATGTAAAATGAAGGTATATGGAAAGGGGATGCGGACAGAGATGTTGGGTGATGAAATGAGGGATTATGACAAAAGAACCGTGGAAGCAAAAACAAGCCTTGCTGGTTTACTGATGATGGATAGTTCTGTCAGGTATGCCGAAGATACCCTGAATTCGCGCACCCCCCTTCAAGAAAATGGATTTTCCGGTATAATTTCAGGGAGGGATGCGCGATCAAAAGAATATATTAAAAGAAAGAGCGCATCACG # Right flank : CATAATCTGCCTGTTGGTGGTTGACTTTGAAGGTATCAGGGGGTAAAACACCCAGTGCCCATCAAAAGTCAGATGTGCGGGTATCCCATCGCCACAAATTCCCCTGCCGGCCAAACATCCGTACAGCGAGCGCCATAAACAGAAATATTCACCCCATTTGCCCCTTATTGATTCGATACGCTAGAATTACCGGATACATCCCCGCCCATCTGGAGGAATCTCATGAAGCGAGCACTTCCGGTAATTGTGTTTCTGGCGCTGGCTCTCATCACACTTACAGCCGCCGCCGCGCCGCATCCTCCCATCACCCCTGAAAACGTGACTCAACTGGTCAGGCAGTCTGAAACCGGCACGCCGTCTCTGCGCCGGGTTGTCTTTTCACCTGACGGTTCTCTGTTTGCCACCGCCGCCGGCAATGACAACGACTACGGCATCAAGATCTGGCAAAGGGATGATCTGTCTCTCAAGAAGGAGATCACGAACCTGACCGGCATTGTGTG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAAACAATAAATGCCCGTCAGGGCATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.00,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 27585-21269 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGCK01000011.1 Leptolinea tardivitalis strain YMTK-2 contig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 27584 31 100.0 35 ............................... CTCCAGGTCATAATCCGGGTCATCATCCGCCGGAG 27518 31 100.0 36 ............................... GACAAGATCATGGACCGATTCCACCGGACGGATAAG 27451 31 100.0 36 ............................... ATTATCCAAAACCTGCCTATGCTGATAACGGCAGCG 27384 31 100.0 36 ............................... ACTATCACCGACGATGAACGCTCCGCCAGCATCACG 27317 31 100.0 34 ............................... TCCAGTAGCGCCGTTATGATGGTTGGGATTGCCG 27252 31 100.0 35 ............................... AGATTGGAATAAACAATGATCCGCAAATCACACGG 27186 31 100.0 35 ............................... TTCGATGGCTGGCAGAGCGCGGGTATGGCGTTTGG 27120 31 100.0 34 ............................... CAATATGTCGAAGATTACCACCCGCAACATGAAG 27055 31 100.0 35 ............................... GGACAGGGGCGGGTCGGCAACCAATAATCGACATG 26989 31 100.0 36 ............................... ACTTTCCAATGCTTCGGCTTTTTCAATGGCGGCCGG 26922 31 100.0 35 ............................... CCCAGTCTGCATCACAATGGTATATACTCCTGGAG 26856 31 100.0 35 ............................... AAAGGCCGCGAGATTGTTGCCCTGTCTGACGCTCG 26790 31 100.0 35 ............................... CTCAAATTGATTTGTATATCAAGGACGGTACCGGG 26724 31 100.0 35 ............................... CTGGTCGTATCCAATGTAACAGTTGCATCCACAAG 26658 31 100.0 37 ............................... TTATGCCAGCCAGAAAACCATCCAGTTTGATCAATCG 26590 31 100.0 36 ............................... CTGGAGATGCTACGCCACAAACACGGTTGTTCGGGG 26523 31 100.0 36 ............................... GCGCGCCACGCGGCTTTGGTTGGATTACCAATCCCG 26456 31 100.0 36 ............................... ATCCCCATAGCAGGCGCCGCGCCATCTACATCATGG 26389 31 100.0 37 ............................... GCGGCATTGTCGATTGAGGCGTTCGCACGCGGGAACG 26321 31 100.0 34 ............................... ATTGATATCCTAGGTAGCCGTGGTAAATGTCACG 26256 31 100.0 36 ............................... CATCAAAGCCGGCGTCGGCGGGAAATCATGTATTAG 26189 31 100.0 34 ............................... ACGACCGGATGCCCATATGGATGATCCGCTTTTG 26124 31 100.0 35 ............................... GCTGATGGGGAACAGAAGGGCGAAATTTACGGATG 26058 31 100.0 35 ............................... GCCCGCACCATTTTGACAGGTACTGCATAATGGCG 25992 31 100.0 35 ............................... TCCCGTGGAAAACTGGCGTCTGTAAATCAATGCTG 25926 31 100.0 35 ............................... ACCAGCGCCTATGAAGCTCCCTGCAAGCTGTCACG 25860 31 100.0 34 ............................... CCGCCAGAAGCACGGATAGCGCACCTGCATGACG 25795 31 100.0 36 ............................... CTAATATGGCAGTTGTGTATATAGTACAACTTTGCG 25728 31 100.0 34 ............................... CCGTCAGGCAACGGCCACTGTGCGACCCCGCGCG 25663 31 100.0 35 ............................... GTGACCTCGACGTTGTTATGCCCCAGCCAGCGCGG 25597 31 100.0 35 ............................... CAGAAATTGCCGAGGCTCAAACCCTGATACTGCCG 25531 31 100.0 36 ............................... CTGCGCCTGACAAACGGGTACGAGGCGACCATTTAG 25464 31 100.0 35 ............................... ATGTTCTACCTGGGCACTTTTGAACGCCCGTAAAG 25398 31 100.0 34 ............................... ATACGAACCATTTTGACCAAAACAGCACCAAAAG 25333 31 100.0 34 ............................... TGGCCATCCAGCAGCCCGGCGAATATTACAGCCG 25268 31 100.0 35 ............................... CTTGCGTTCGGCGCCGGATCCGCTGCCCGAATATG 25202 31 100.0 35 ............................... CCGTATGCCGAAAACACCACCACATCATAGATGGG 25136 31 100.0 35 ............................... ATCCAGCCTGCCACGTCCAACCATGTAGACGATTG 25070 31 100.0 35 ............................... GCTCATCTCATCCTCCTACCCCACCACCGCCGGAG 25004 31 100.0 35 ............................... TCCCCGAATATTTTGTACCACCACCCGCATTCCTG 24938 31 100.0 35 ............................... AAAAAAGGTTACGCCATATCATCGCCCGCAAGCAG 24872 31 100.0 35 ............................... AGACCGTGACCGCAAAGCCCTTGACGCGCTGGACG 24806 31 100.0 35 ............................... GGGTTTTGTCTCGCTCATTTGATGCCCCCGCAGAG 24740 31 100.0 38 ............................... AATTGGTGAAGATGCCTGGATTTCCGGCATTCGTCACG 24671 31 100.0 36 ............................... AACGACATTTATAATTTGCATGTCGCCTCTCCTCCG 24604 31 100.0 34 ............................... CAGTGAACGAGGGAAATCCACCGTGCCTACCAAG 24539 31 100.0 35 ............................... GACCATGAATGTTTGCTACAATGTCGGGGGTAGCG 24473 31 100.0 35 ............................... GATAATATGATCAAGGAACAGATGCGACTGGCTGG 24407 31 100.0 36 ............................... TCATTAACAATACATACCTTGAATGAGATATCATCG 24340 31 100.0 34 ............................... CCGCCAGAAGCACGGATAGCGCACCTGCATGACG 24275 31 100.0 35 ............................... CATTTCTCCGTCCGGCTGACCCATCCCGCCCGGTG 24209 31 100.0 35 ............................... CAGTCCAGCGCGGCCGAAAGATATAGCCCGGTAGG 24143 31 100.0 36 ............................... TTCACCAAGACAGACTGGGGACAGGTTGGTCTGGAG 24076 31 100.0 36 ............................... CTTGCGTTCGGCGCCGGATCCGCTGCCCGAATATCG 24009 31 100.0 35 ............................... GGGATGCCTGCCCCAGTATGGGGCAAGGTCAACGG 23943 31 100.0 35 ............................... CTGCATGATCCGGAACAGCAGTGCCGGTGTATCCG 23877 31 100.0 37 ............................... ACATAATCCCCGATCGGCCTGACAATATCTCCGGCCG 23809 31 100.0 36 ............................... AAAATCAAACGCGGTGGATTAATCACCTACAAATGG 23742 31 100.0 33 ............................... GAGGTAATACCGGTACTGTCTGCCCATGGATGG 23678 31 100.0 35 ............................... ACTATAATATCGGGGGTAGCGGTAGGGGTAGCGGG 23612 31 96.8 36 ..............................A TGGCGCACAATTACGCATCCGGCAGGGAGTTTTTCG 23545 31 100.0 34 ............................... TCCTGCAGCGGCCATGGATCGAGAATGATATAGG 23480 31 100.0 35 ............................... CACAGGTTGATCAACGCTCCGTCAAATCCATCCTG 23414 31 100.0 36 ............................... GGAGAAAACGATCAAGGATTTTGGCTGTTTGCTGTG 23347 31 100.0 35 ............................... CAGTTTTCCAAACGCCAGGTCAATAGTCTCCGGCG 23281 31 100.0 35 ............................... ATCCTGGCTTCGGCGCACTGTTTTTCCCTATTTAG 23215 31 100.0 36 ............................... TCGCCTGGCTCCAAAATAGCCCATGAGTCAATCTTG 23148 31 100.0 35 ............................... TAATACACCCTCTTTAGTGGCTAATGCTATGGTCG 23082 31 100.0 35 ............................... ATATCACAAAATATGTAGGAAGTAGAGGAAAAAAG 23016 31 100.0 37 ............................... ACTTTTTTTGATTTTTTCGGTATTCGTTGCGTCCTTG 22948 31 100.0 35 ............................... TCTGGAATCATAGGCTTCAACTATGATCCAGTTCG 22882 31 100.0 34 ............................... TCTGATGGCTGCGGTAAATGAACCATCCCAAGGG 22817 31 100.0 34 ............................... GTCAGGGTATTTGCTGTTGCTGTTATTGATATCG 22752 31 100.0 35 ............................... AAAATATAATGCCATCAAATACGCAACGCAAGAAG 22686 31 100.0 35 ............................... AGGGAGATACAGTCCGGGGGCGCCTACCCTGGGCG 22620 31 100.0 36 ............................... ATCCAGCGGGGTGGGCAGGTCACAGCCACAGTCAAG 22553 31 100.0 34 ............................... ACAAATTCAGGGGAGAAACAGATTTGTCCTGGGG 22488 31 100.0 36 ............................... TGACAATTTCCAGGCGGCCGAATATTTTCTTACCAG 22421 31 100.0 35 ............................... GTGTTGTCTCCAGATACGAAGGAGGTGACGGTTTG 22355 31 100.0 35 ............................... AGACAAATTTGCCGATGACATGTCCGAATACGAGG 22289 31 100.0 36 ............................... ATCTAGCAAACATTGTAAAATCTCTTCAATTTTACG 22222 31 100.0 35 ............................... ATACCAGCCTGGGCCACTTCTGCGCCGGCCATAAG 22156 31 100.0 34 ............................... CACCATGTGTCACCGTCAGACCAATCGTAGAACG 22091 31 100.0 34 ............................... TTTTCTATTTGAATATTCTTTATTATTTCCTCCG 22026 31 100.0 34 ............................... ACACTGAAAAAGCTATTAGGTCACACTACCCTGG 21961 31 100.0 35 ............................... GCTACCGCCTAAAATTGCCTCAACCAAGTCACAAG 21895 31 100.0 35 ............................... ATTGTCAATAGGTAGATATGACAAATGTCACTCGG 21829 31 100.0 35 ............................... GCTACCGCCTAAAATTGCCTCAACCAAGTCACAAG 21763 31 100.0 35 ............................... ATTGTCAATAGGTAGATATGACAAATGTCACTCGG 21697 31 100.0 37 ............................... GTTACATTGCTTACAATAAATCCAATGAAAGAACTCG 21629 31 100.0 36 ............................... AGAACGTGTTTTTGCGTCTGTCCGCAGGATTACATG 21562 31 100.0 34 ............................... TTACTAGGTTAATTCTTTCTCGCGCTGTACCTGG 21497 31 100.0 35 ............................... CCAACCTTTCGGTTGGGCCAGCAAGGACGCCCCCG 21431 31 100.0 34 ............................... CTTGCCTCCCCACAGGTTACCCTGTGTATTTGCG 21366 31 96.8 36 C.............................. CCCAGGCAACCCCGGAGGATATCCGGGGCAAAGATG 21299 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ====================================== ================== 96 31 99.9 35 TCGCTCCCCATGCGGGGGCGTGGATTGAAAT # Left flank : GGGAGATATTGACGCTTATCCACCTTTTTTCTGGAATTAGGAAAATCACCATGATGGTTTTGATTACATACGATGTTAATACAGAGACAGCCGCCGGGAAAAAAAGGCTGGCGAAAATGGCCAAAAAGTGCACGAACTACGGTCAGCGTGTCCAAAACTCTGTTTTTGAATGCCTTATTGAACCGGCCATGTTCAAACAATTGCAGGATCAATTGGAGAAGATAATGGATAAGGAAAAGGACAGCCTCCGGTTTTATTATTTAGGTGATGAATGGAAAACGAGGGTGTATCATGTGGGATCAAAAAAAACCATGGATTTGGAAGGAACGTTAATTATATAATTGCGAAGTGTATGTTCACACGGATTGCTGTTGAGGTTCGCAGGAAAAAAGCAGTCATTTTTGATAGAATTTCGTTTAAAGAAGGGAGATTTATTAGATAAAAGCAATTGATCCCCAGTATATGGGGGATAGTGATAATAATATCGCCAGAAATTGCGG # Right flank : ATCATCTTATGAGCTGAAGTGTCATCTAGTGCTTCGGCGATTATTCTCAACGATAATCAATAGAAAGGAGGTAATTTTGAGAAATTCTTGCAATCGGTCGATGATTAGTCCCCAAAAGTGCGTAAAACAAAACCACAGACCGTATGCCTACTCAAATGAACAGGTATACATGTCTGTGATTGGCCTGAGTCGGGGCGAGAGGATTTGAACCTCCGACCTCTTGCACCCCATGCAAGCGCGCTAGCCGGACTGCGCCACGCCCCGAATGTTTTGTATTATAAGCCTGACTATCAGTTTTTGGCAAGATTTTTCATAAGACTATTTATACCGGAACAAAACCAGGGATAAATGTTGTTATCACCAAAATGCCTGCCAGGATGATCAGAATAATAACTGTTATCCAGGCAAAAATATTAAACACTTTACCGTTGACATAATCTCCCATAATACGCCGATTATTGATCAGTGAAAGCATGGAAATCAGAATAACAGGCAAGAGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCTCCCCATGCGGGGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.30,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 55850-56918 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGCK01000011.1 Leptolinea tardivitalis strain YMTK-2 contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 55850 36 100.0 38 .................................... TCATCCAGCCATGCGGGAAGAGTACTGTCTTCATCCCA 55924 36 100.0 40 .................................... ATAACCCATGATGCGGGTATATCCACCCTTGGTCTGGTAG 56000 36 100.0 42 .................................... TAAATTTTGAGAAATGAATCACATCAATCTGGTTTATCACAA 56078 36 100.0 36 .................................... TCAGCCAGGCTGTTATTTATTAGCTTTTCCAATTGT 56150 36 100.0 32 .................................... CAACTGAACTATTTTCCTATGCTTCAACTGAA 56218 36 100.0 41 .................................... CTCCATCAATTCGGCATTCGAATGACCTCTCTTATTCTTTT 56295 36 100.0 37 .................................... AAGGATTTTCTTGCCTTTGTCATCCGTCATTGTTTTT 56368 36 100.0 39 .................................... TCGGAATCAACTTCCTGACTAGCGAAGCCTGCGCCCTTT 56443 36 100.0 42 .................................... ATCAACTGTTTAGCGGCGGCCTGCAATACGTCTGCTGGTATA 56521 36 100.0 33 .................................... TCATTGGTGGATTTTACCAGTTGCATGAGGATT 56590 36 100.0 36 .................................... CATCAGCTTCACTGTTGTACTTCATAAGTACAGTAA 56662 36 100.0 38 .................................... GGACCTCAACAGCCCGCTTTGAATGGACATAATCGATG 56736 36 100.0 39 .................................... ATCCTGGTTTCTGGCGGATATATCGCGGAGGCGGAGATA 56811 36 100.0 36 .................................... CAAAATCTCCTTTAACTCGCCCTCTAACTCTAAACT 56883 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 15 36 100.0 38 GTTTAAAACAATAAATGCCCGTCAGGGCATTGAGAC # Left flank : TGCCAATTCGCCAGTGTGTCATTGAACAGGCGCGCCAACTTGCCCGACGTTTTCAGGAAAACCGCCCCGGTTATCAGGGAATGGGTTTTCATTAGTTTTCATTAGAGGTAATGGTATGGACCGTTTCTTTTACATACTTGCTTATGATATTTCAAATGACAAACGCCGTACAAAAATTGCAAAGCTCATGGAATCGAGCGGTACACGAGTTCAGGGAAGTGTCTTTGAAGCCTGGTTTTCACCGAAAGAACTGGATAAGGTGGTGCAGCGTTCAAAAAGAATACTTGTTGATAAAGAAGATTCTCTACGTGTGTACTTTCTCTGTGAAGATTGCCGCAAAAAAGTCAGTCTGTATGGTAAAGGAAAAGTGACAGAAAAACCTGGATTGGTGATTATTTGATGAATTCGCGCACCCCCTCTTAAAAAATGGTAAAATATACATAATTTGTGAGGGAGGATGCGCGACCAAAGGAATATATTAAAAGAAGAAACAAACTACG # Right flank : CCCGTTGAAAGAAATTCTGGAAAAGATAGCTATATGATGAAAGAAGAAAAATGAACACTATTTCATCTGAGTTAATTTTTATGCTTGTGATATTTGCTGTTCTGTTTGTTACAACAATTGGATCACTGTTACTAATTTATATTGCAATAAAGATACAACAAACTTGTCAACATCCCAAAATTAGTACCACTTTAAAGTAGAAACTCAGGCATGAATTGATGCATATTGGTACGGTGATAAGCCCTTCAATGACTCATGGGGCCTAATGACATTGTATTCTTCCAACCATTGTTCTGAAATTTCTCTCACCTCATTCAGTGAATTGAATAAATAGGCATCCAGAATATCTTCCCGGTAGGTCCGGTTGAATCGTTCAATATATGCGTTCTGAGCCGGTTTGCCAGGCTGTGTGTGAGCCAATTGAACGTTGTGTTCCTGTGCCCATTCCTCCAACCGATGGGAAATAAATTCCGGCCCATTGTCCATCCGTATTTGCTTGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAAACAATAAATGCCCGTCAGGGCATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.00,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 3 58485-58889 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGCK01000011.1 Leptolinea tardivitalis strain YMTK-2 contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 58485 36 100.0 41 .................................... CTACATCGACTGCAATTCCTGTCGACCGATTTAAAACTTCG 58562 36 100.0 35 .................................... ATTGATACATGTCCTTGACAGTCCGATTCAAAACA 58633 36 100.0 36 .................................... AAAACTACCGCATATTTTGTGCCTTTTCTGAATTTT 58705 36 100.0 40 .................................... GAAAGTCATAAGTAATTGTGGCGTCGAAAAAATCAAACAT 58781 36 100.0 37 .................................... TTGACGGCCTCGGCGCTTGCCGTGTTCTGTAAACTTG 58854 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 6 36 100.0 38 GTTTAAAACAATAAATGCCCGTCAGGGCATTGAGAC # Left flank : CAAATCGGCAAACATCCGTTTGAGGCGCTGGTTTTCTTCTTCCAATTCTTTTAATCTTCTCAGCGAACTGGCATCCATTCCGCTGTACTTTGATTTCCACTTGTAGAAGGCACTTTTGCTAAATCCGTGCTTCCGGCTTAAATCTTCAACCGGTATCCCTGATTCCGCCTCTTTGAGGATCGTCACGATCTGACCTTCTGTGAACTTCATCCGCTTCATGTGGTCTTCTCCTGGTCTGATTTTGCCAGAAGTTTCCACTTCTTGCTGGTACTATTTTAGGGGATGGTTACCGAGGTTGAAAAATTAGGTAAGAAAATTGAACAGATTATTGGCGCATTATTCCTTATTGGGTTCATCTTGCTTTTCGCGTGTTATGGACCAATCATAATTTTTTAGGCCTTTCACTGCCACCATGCCATTGAACTGAGATTCTTCAGTTCTTAATATTGAACTACCTCAAGGTTATCAAACCGCTTCGTTCTAATGAATGTTTGAAATGA # Right flank : CGCTCCGATGGCTGAGCTCGTCGAAGCCGTCGAAGCTGGTTAAAACATATTAATTTAACATTTACAACGATTCCGTACCGCCATGTTATAAACTTGAAATCAGGAAATTTCAATAGCAAGACGAAAAGTATTACTATCAACCACAACGTTACACAATTTTCATAGCATGAGTCAGTATGCCAGAGAATCAGCGAACACTATGCACAACAAAGTTGTTCATCAGGTCTGCAGTCATCGAAAAACTGAACTGTTTTTATTACGGCTTCAGTTGCATCATCTACTTATCCATTAATCATAAAACATCAAACCTTTGACGGATGTATTTTTATTCATCACATTGATGGAAAAACACGCGAGAATTCGGTTCGTAACACAATCCATATAATCTGTTCCTTCGTATACGTCTGGCTTTTCTTGAAAAATAGACAATCCCGTCAGAATTGACAGTTTGAAGATCAAAAATTATTGAATCCACTGTTCAGATCAAATTGTGGGTAATT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAAACAATAAATGCCCGTCAGGGCATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.00,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA //