Array 1 28585-27273 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALPO01000026.1 Salmonella enterica subsp. enterica serovar Hartford str. 06-0676 contig00026, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 28584 29 100.0 32 ............................. CGAGCGCCGGAGTTGATTAGTGGTGCCGGGGA 28523 29 100.0 33 ............................. CTGATCGCCGGATACGTCGCGAGCGACATCGAG 28461 29 100.0 32 ............................. CCCTTGAAGCGGCTCAATTTCACCATGACGCA 28400 29 100.0 32 ............................. CGTTATAAGGCGGTAACAGCGAAAACGTATGA 28339 29 100.0 32 ............................. GCTCCCGACTCCTGAATGAAGGTGTCGATTAT 28278 29 100.0 32 ............................. ATCTGGAATTGTTGACGGTGGCTGATTTAGCA 28217 29 100.0 32 ............................. TCGCCTTTTCCAGTCGCCTGCACGCTATATCA 28156 29 100.0 32 ............................. TATAATTGGCGTCCATATATCTGGATATTTAC 28095 29 100.0 32 ............................. TTTAAATAGTGGGGTGATCCCGGTGAAAATCC 28034 29 100.0 32 ............................. GTTCAATTCGGTTTCCACTTCCCGCTACATCG 27973 29 100.0 32 ............................. ATTATCTCTCACTTGCTTCAATAAGCCCCCGC 27912 29 100.0 32 ............................. TCGGCAGCTACTTCAGTGTTAGGCGGCATCCA 27851 29 100.0 32 ............................. CCACGGCGCAGGAAATCTCCTTTGTAACAGGG 27790 29 96.6 32 .G........................... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 27729 29 96.6 32 .............C............... TGTAATCTCTCTATTTATAATCTGTATTGTAC 27668 29 96.6 32 .............C............... CAACTGGTGATACGGTTATGTCTCGTATCGCA 27607 29 96.6 32 .............C............... GTGATCGAGTATTGCTCGTTGTCGGCGTGGGC 27546 29 96.6 32 .............C............... AGTAATCAACTCAATGCGCTCACAACGCAATG 27485 29 96.6 32 .............C............... CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 27424 29 93.1 32 ............TC............... TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 27363 29 96.6 32 .............C............... AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 27302 29 89.7 0 A...........TC............... | A [27275] ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGAAATGCCGTCATGGCCTGGGCGACCAACACGGAGTCGGGATTTGAGTTTCAGACATGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGTACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1098-94 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALPO01000007.1 Salmonella enterica subsp. enterica serovar Hartford str. 06-0676 contig00007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1097 29 100.0 32 ............................. AGCACTTCACCGGATCGCTGGTTGTGCCGGTG 1036 29 100.0 32 ............................. GAAAAGAAGAAATAATGAGATTTGCCCCGGAA 975 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 914 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 853 29 100.0 32 ............................. ACGTTTTAACAGGGTAATATTTACTTAATTAT 792 29 100.0 32 ............................. GTTACTTTATTATCTCTCGCATAGACCCGGCA 731 29 100.0 32 ............................. AATATCTATAACGGAGCCGTTTTCATTGAGCG 670 29 100.0 32 ............................. TGGATATTCATTGAGCGCTGGAAATTCAAAAA 609 29 100.0 32 ............................. ACAACAACATATTGGTAAATCAGGATACTGGC 548 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 487 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 426 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 365 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 304 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 243 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 182 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 121 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //