Array 1 8398-6381 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAWX01000031.1 Streptococcus agalactiae strain NNA040 161, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 8397 36 100.0 30 .................................... TGTCTTCTTGCATTCTTCCTTGGCAGCATC 8331 36 100.0 30 .................................... GCAGAAAACGCATTGCAAGCTGATGCGCTA 8265 36 100.0 30 .................................... CCGTTCAATCTGTTCTTGCTTTTGGTCATC 8199 36 100.0 30 .................................... AAGGGTGTTAGATGATAATACCTTTTTTAA 8133 36 100.0 30 .................................... ACACCGTTGCGGTTGTTGTCGGTCACTCAA 8067 36 100.0 30 .................................... TCTATTAACAATAGTTTTATCCAATTGTTT 8001 36 100.0 30 .................................... TGAAAACAAGCGCAAAGCTGTCAGAAAACA 7935 36 100.0 30 .................................... AGTTATCAATGCTATATGGTTTCTCATCTT 7869 36 100.0 30 .................................... GTTTAATTTTGAATAATATCATGTTTACTC 7803 36 100.0 30 .................................... TATGTCATTGTGATTGTGGGAATACTTGTG 7737 36 100.0 30 .................................... GGCGAACTTGTAACGTTTGACGGTAATTTT 7671 36 100.0 30 .................................... TAATGTCTTTTCCTAGAATGTACATTTCTA 7605 36 100.0 30 .................................... ATTACTTTCAAGATGTCTATGACTATATGC 7539 36 100.0 30 .................................... TATTTCATCATAGAAAATCCTGCTAGTGGT 7473 36 100.0 30 .................................... GCGATGATGGTAAGTCATCATGGACAGCGT 7407 36 100.0 30 .................................... TTTTACACACGATGTCAGATATAATGTCAA 7341 36 100.0 30 .................................... AGTACTGCACTAGGAATTGTAGAGATCAAA 7275 36 100.0 30 .................................... CGTACCATCTATCAATTTACCGCAAGCTGT 7209 36 100.0 30 .................................... CGTACCATCTATCAATTTACCGCAAGCTGT 7143 36 100.0 30 .................................... CCGATTATTTCCTACATAATACGCACGTTT 7077 36 100.0 30 .................................... AACTGTGTGATACTTTTCGTTTTTTTCTTT 7011 36 100.0 30 .................................... TTTTATAAGTGATAGAGTGTGCAACACCGT 6945 36 100.0 30 .................................... TTAAAAGATTTAAACTATCAAGCGTCAATT 6879 36 100.0 30 .................................... TTCTAAATGCTGGTGACTGCTTTGCATAAA 6813 36 100.0 31 .................................... TTGCTGCTAGACCCAAACAGTTTATTTTTAG 6746 36 100.0 31 .................................... TTGCTGCTAGACCCAAACAGTTTATTTTTAG 6679 36 100.0 30 .................................... TCCTTTTTTAGATAATGTGCGATCACGGAC 6613 36 100.0 29 .................................... TTTTACCAATGCTTCCATATCGCTTATAT 6548 36 100.0 30 .................................... TACTTGACGAATTGAAGATGACGGAATTTA 6482 36 100.0 30 .................................... TGGTTATACATTTACTAATCCATCAGCATT 6416 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 31 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTAAGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : AAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //