Array 1 423474-424966 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEXI01000001.1 Salmonella enterica isolate STY39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 423474 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 423535 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 423596 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 423657 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 423718 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 423779 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 423840 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 423901 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 423962 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 424023 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 424084 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 424145 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 424206 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 424267 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 424328 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 424389 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 424451 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 424512 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 424573 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 424634 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 424695 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 424756 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 424817 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 424878 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 424939 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 441098-443062 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEXI01000001.1 Salmonella enterica isolate STY39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 441098 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 441159 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 441220 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 441281 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 441342 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 441403 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 441464 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 441526 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 441587 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 441648 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 441709 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 441770 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 441831 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 441892 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 441953 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 442014 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 442075 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 442136 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 442197 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 442258 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 442319 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 442381 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 442442 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [442484] 442484 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 442545 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 442606 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 442667 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 442728 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 442789 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 442850 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 442911 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 442972 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 443033 29 96.6 0 A............................ | A [443059] ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //