Array 1 48423-49856 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCGA01000025.1 Pseudomonas sp. ALS1279 NODE_25_length_69012_cov_16.039_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 48423 29 100.0 32 ............................. GCCGCTGGGCAGGGCGTCGCGAGCTGATCCGC 48484 29 100.0 32 ............................. CATGTATGCCGGTGTGGGGCTTCGCTTTGAGG 48545 29 100.0 32 ............................. GCCGCCGGCACCGACTATGACCCGCTCGACCA 48606 29 100.0 33 ............................. GATGGTATGCCGGGCGTTGGCGGCCCTGGTATC 48668 29 100.0 32 ............................. CCCTATGTCCACTTCTACACCACCAAGCGCGT 48729 29 100.0 32 ............................. CGTACGACCGCACCGTCTGCACTGGCCCAATC 48790 29 100.0 32 ............................. GCCGGCGCGTCGTACTCCATGCGCAGTTCTTC 48851 29 100.0 32 ............................. CTTCTGGCTATCGTTCCTATCATCGCTACAGA 48912 29 100.0 32 ............................. CGAGTGATCGACTGGCGCAGCTCGGCCCGTTG 48973 29 100.0 32 ............................. CTCACCCTCGACTACGACTACACCCCGGTACC 49034 29 100.0 33 ............................. TAGGCTTTGCCAGTGGCGGCGAACTTTTCGCGC 49096 29 100.0 32 ............................. GATCAGATGGGCCACACCACCATCGCCATGCT 49157 29 100.0 32 ............................. CCCCCGCTCAGCCATCAGCCGAGCGGCTACCG 49218 29 100.0 32 ............................. AAAAACCGGGTCGCCGAGAAAGAGCTGGTGCC 49279 29 100.0 32 ............................. AAGCGCCCGACGATGCGGCTCTGCCCGGTGCA 49340 29 100.0 32 ............................. TCGAGGGAGACCATCCCCGCGAGTCAGCACAA 49401 29 100.0 32 ............................. CGTTTCCATGGATTGATAGTCGCCATCAGTGG 49462 29 100.0 32 ............................. TGGGCGGAGGTGTAGCGATGAAGAAAGCCATA 49523 29 100.0 32 ............................. CAGTTCGATTTCGGCTGATCGCCGGCTATTGG 49584 29 100.0 32 ............................. ACATCATCGACGGCATCAACGCCAAGTTCCGC 49645 29 100.0 32 ............................. CCGTTGCGAGCCACGTCCTGGATCACCACGTA 49706 29 100.0 32 ............................. GTCGCCTTTTCCAGATTGTTGATCATGTGCGC 49767 29 89.7 32 ............TA............T.. AACTGCGACGAGAGGTTGCCGATGGGCAACCC 49828 29 72.4 0 ...C.......ATG...........GAGT | ========== ====== ====== ====== ============================= ================================= ================== 24 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATGAACCG # Left flank : AGGAAACCATCATGCCGCGCCTGTACCGCGAAGCGCCGGTCAACTCGATCTGGGAAGGCTCGGGCAACGTGCAATGCCTGGACGTGCTGCGCGCGCTGTCCAAGGAGCCCGGCGTGCTCGACGCGTTGTTCGCCGAACTGGGCGATGGTCACGGCGATGCCCGCCTGAAGGCGCATATCCAGCGCCTGAAGGCAGATTTCGCTGATACAGCCGATATCCAGTACCGCGCTCGCCAGCTCACCGAAGACATGGCCGTGGCACTGCAGGCCAAGCTGCTGCTGGAGGCCGGCAACGCCACGGTGTCCGACGCCTTTATCGCCAGCCGCCTGGAAGGCCGCGGCCGCGTCTACGGCACCCTGCCGCGCGGTGTCGACGTCGAGGCGCTGCTGGCGCGTAGCACGCCGAATCTGCTTTGATACAGGGGCGATCTTTAACAAGGAGAAGTTGGTAGATTTTTAGCGGCTGATTTTCTCCTTTGAGAACAATTGGTTAGGCTAAGT # Right flank : TAATACCGGCCTTGCTCCAGAGCTAACGCCCCAAACGTTTTTATTCCATGAGTTCGACGATGCAAGGCTCAGGTGCTGGGAATCTAATTAATGGTTTGCAGCAATAGGACTTCGCACGGTTGTCAGGTAGGGGGGCGTGCTGGCACTTTGTTGTGCAAGCCTCACGCAATGCAGGGAATGACCAATGAAAGGATTCGCCGATCTCAGCGACCAGGCCCGTCGCCTCTGGGCCAAGAGTGGTGATGGCTACGGCCATGGCGTGCTGGCCCATTTGCTGGACGTGGCGGCGGTGGCTGAGCGGATGCTGGCGCACGAACCGGCGAGCACGCTGGATTGGGCCGCTCAGACGTTGGGATTGGAGCGCGAGCAGGTGGCGCGCTGGGTTGCCTGTCTGGTGGGCCTGCACGATTTCGGCAAGGCCATTCCCGGCTTTCAGGACAAGTGGCTCGAAGGGCGGCAGGCCGATGAGGCGTTGGGGCTGACCTTTCCCTCCCGTGCTC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 59340-60223 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCGA01000025.1 Pseudomonas sp. ALS1279 NODE_25_length_69012_cov_16.039_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 59340 29 100.0 32 ............................. CGGAACTGGTAGAGCAGCGCGAACACGCGCAG 59401 29 100.0 32 ............................. TTTCCGGCGGGTCGCTGACCTCGTTGCGGCCA 59462 29 100.0 32 ............................. GCATCCGCAAGGACGGCCAGAACAGCTTCACC 59523 29 100.0 32 ............................. GATGCAGTCCGGTGCGGCGATGATGACGCCCT 59584 29 100.0 32 ............................. GCCACGGTGACGGACGTACCGCCTACGTCTTC 59645 29 96.6 33 ............................A GTAGTCCTCTGGAAATTCCTCCCAGTGATCACG 59707 29 100.0 32 ............................. CACGTGCAGGTCGGCGACGGCATGCGCATCAC 59768 29 100.0 32 ............................. GCAGCGCACAGCAACTACCGCACCGAAGTAGC 59829 29 100.0 32 ............................. CTGTTGAAGGTGCGGCCCTTGTTCTTCGGGCA 59890 29 100.0 32 ............................. ACCTCGCGCGGGCTGAGCTTGCCCAGACGGCA 59951 29 100.0 32 ............................. CACGCCGTCAAAGGCGCCTGGGGCGATTTCCT 60012 29 100.0 32 ............................. CGATAACCCAGGCCGACATCGAGGCCTACCTG 60073 29 100.0 32 ............................. ACCATGGCGATGTCTGCCATGGCGTCGTCTAC 60134 29 96.6 32 ................T............ CAGGAGATGGCGCTGGAGTACATCGCTGCCTG 60195 29 79.3 0 ...........TTT...........G.TT | ========== ====== ====== ====== ============================= ================================= ================== 15 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATGAACCG # Left flank : GACGAAGATCATTCCTACCATTGAGGAGGTGCTGTCCGCTGGTGGTATCTCACCACCTGAGGCGCCGCCGGAGTCCGTGCCGCCTGCTATCCCCAACCCCGAAAGCATCGGCGATGCCGGGCACAGGGCGCAGTAATGAGCTTTCTGGTGGTGGTCACCGAGAACGTCCCGCCGCGCTTGCGCGGGCGTATGGCCATTTGGCTGCTGGAAGTGCGTGCCGGTGTCTATATCGGCGATGTTTCCAAACGCACCCGTGAAATGATCTGGGAGCAACTGAGCCAGGGTCATGAAGACGGCAACGTGGTCATGGCCTGGGCGAGCAACCATGAGTCGGGTTACGAGTTCCAGACACTCGGTCCCAATCGCCGGCTCCCGGTAGAGTTTGACGGCCTGCATTTAGTCGCCTTCCATCCCCCGGGAAACCCTGATCTTTAACAAGAAAAGTTGGTAGATTTTTAGCGGCTGATTTTTCCTTTAAGGAACAATTGGTTACGCTAAGT # Right flank : TCGAGGGGGTACCCGGCACGCTGTTTTTTAGCCGGGCAGGCGAGTAATCTTGCCGCCGATGGTTCTGCGTGCACGTACATGACGCGGATGAAAAGGGAATAGGGTGCGGCGAATCTCGCCAACGCCCTGGCTGCCCCCGCAACTGTAAGCGGCGAACGATGCCCTCATGCCACTGACTCCGGTCGGGAAGGCGGGCGAAGTGCCAAGCCGTGAGCCAGGAGACCTGCCATCGATAACGGGCGTTTCGCCCATCCTTCATCCGAATCGTCGCGCGGTGGGCGCGGCAAAGGAACTCGCATGCATATCGAACCCGGTGTCGTCGAAGGCGCCAAGATCCTGCTCAGCTACGCAACGGCCGTCACCGCTTTCGGCCTGACCGCCAAACTCGCCCTGGACAGCGTCCGCAACAACGGCGGTGTCGCCGCCCTGGCGCTGCGCAGCCTGCTGACCACCGCGCTGGTGTTCTGCTTCTTCGAGGTGTTTCCGCATCATGCGGTGGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //