Array 1 683684-684838 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAENCD010000001.1 Staphylococcus pseudintermedius strain HSP096 contig_1_segment0, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                	Insertion/Deletion
==========	======	======	======	====================================	===============================	==================
    683684	    36	 100.0	    30	....................................	AGAATACGCCGTCGTCTTACCGCTTGCAGT 	
    683750	    36	 100.0	    29	....................................	ATATCTTAAAAGAACCGTCCAATACTGAT  	
    683815	    36	 100.0	    29	....................................	GATTATTATCCAACAATGTTTTATAAGCG  	
    683880	    36	 100.0	    31	....................................	ACAAAGGTCCTTGGACTGGTCACCCACAAGC	
    683947	    36	 100.0	    30	....................................	TACAGATAATGAAGCGTCTGACGAATAGTT 	
    684013	    36	 100.0	    30	....................................	AATCGATAAAAGGAGTGTCAGATATAGTTA 	
    684079	    36	 100.0	    30	....................................	TGAGTAGATATAAAAACTACTGGAGCATTG 	
    684145	    36	 100.0	    30	....................................	GTTTGTTTGAGTATTATTCCCCCAATTTTC 	
    684211	    36	 100.0	    29	....................................	CTTTCTAAAAAACGTTGATACGCTTCTTT  	
    684276	    36	 100.0	    29	....................................	AGCAAAACGGTTCAAACGTTGGGTAACGT  	
    684341	    36	 100.0	    29	....................................	AATAAAAAAGGGGAATAAAGCAGTTATAT  	
    684406	    36	  97.2	    30	.............................A......	TGCCTTGATGATTGCTGAGCCTGGTGCTGC 	
    684472	    36	  97.2	    31	............................A.......	AAAATATTTAGCGGAATCTTTACAGGTCAAT	
    684539	    36	  97.2	    29	............................A.......	TTTAACGCCGCTCCTATGACGAGCGTGAA  	
    684604	    36	  97.2	    29	............................A.......	CTCGTACAACTCTTTATTATTGTTCTGCT  	
    684669	    36	  97.2	    30	............................A.......	ATCTTTTTAAACGAGATATTAAACAGCAGG 	
    684735	    36	  97.2	    30	............................A.......	ATCGTATTGACAACTGTCTTAGCATTCAGT 	
    684801	    36	  88.9	     0	..........................C.C..C..C.	|                              	A,T [684824,684830]
==========	======	======	======	====================================	===============================	==================
        18	    36	  98.5	    30	GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	                               	       

# Left flank :   TTTTAATTATATTATTTCCGGAATCACATCTTGGCATACACGATATTAAAAAGTTTATACACCTTATAAAGAGATATAAATTTACCACGATTATTTTTACTAATCATCCTTCTATCATTATTAACGAGGAAAACATATTTCTTTGTAAAAGTAATAAGAAGTGCCACGACATCGAAAAAATATATGAAGAATTAATGTTATTTGTTCCTGAAGAAGTAGTGAGTCATCAATTAGTTAACATGATTGCATATCACGAATTCGTTGGTGAAAACCTTTCCGAGTATGAGCGATATTTTAAGTTTATCAATCATTACAATTAGGCTATACTATATTTAACATTATATGATAGAGAAAAGTTGATCCAACGATGAAGTAATGACTATGTGACTTCATTCGTGATGAAGAGGGTTAACTTTATCATCGAGTATCATATCTGACTTCTTTTAATAGTGCCAAGCCTCAATTTTGAAAAGGATTGAGTTAATGTTTTTGGATTTGAG
# Right flank :  CTTCTTTATAATCGTACATCAACCTCACTATGCTTTCAAAATAATTAAGAGGCATTGTGGGCTTTTTGTGTTTATACGAAATGTTGTATGAATCTCTCAATCGTGCCACCATGTTATAATAGGTATAAATTGTTCATAAAAGATAAATAGAAAGCAGGGGAAATCTATGGAAGCAATTATTGCAACTCAACCGTTCCAATTAGCAGAAGGTCAAAAGTTTGAAAAAGTATCGCGTGAGCTCCCAACACCAGAGGCGCATGATATTTTAATCAAAGTGTACGCAACAGGGATCAATCCGGTTGATACGAAAATGCGGCAAGCCCCGTTAAATGCTGAGGCACGTGTCCTAGGTTTTGATGCGGCAGGCGTGGTTGAAGCGGTCGGCGATGCGGTTACAGATTTCAAACCGGGTGACCGAGTATATTATTCAGGATCGAATCAACGAGATGGCTCAAATCAGACGTATCAGCTCGTGAATGAAAATTATTTAGCGCATATGC

# Questionable array : NO	 Score: 6.19
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC
# Alternate repeat :   GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:72.22%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.20,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-7] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.91,0   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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