Array 1 218938-216450 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKSV01000029.1 Bifidobacterium longum subsp. longum strain 9 contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 218937 33 100.0 34 ................................. AGACACCCACGGGAATCGTGAAGTCCCAAGCACC 218870 33 93.9 33 ........................G.......G CCATTTTCGGCACGCCGGACACGTGGAATCAGC 218804 33 97.0 32 ................................C CATCGCGCCGGACGGGTGGAAACACAAGGCGG 218739 33 97.0 34 ................................T GAAGTAGCTTGAGCGTTTGAGCCCTGACCTCCTG 218672 33 97.0 34 ................................T CATACATCTCTGTAATCTGATCGACCATAGGTTT 218605 33 97.0 34 ................................G GTGTCGGTTACGCCTAATGCTGTGAGATTTTTGG 218538 33 97.0 33 ................................T TGATCGCCGGCACCCAGATGGTGGTGATGTTGC 218472 33 100.0 35 ................................. TCCCCGTGGACAACCGCGAGGTGGCAGCCGACGAC 218404 33 100.0 32 ................................. GGCTATTAGGGCTCGTTCCCAGAGGCGTTGCG 218339 33 100.0 34 ................................. TCATACCACACTCGGTTACAAAAAGTAACCGGCG 218272 33 97.0 34 ................................G ATTACAATGTTTGGACGCCAAACACGGTAATTAA 218205 33 97.0 32 ................................T GGACGGGCGCGGGGTCTACCGCCAAGGTGGTG 218140 33 93.9 34 .........T......................C CCTTGGACGGTCAGGTAAACGGCAAGACCGGTCA 218073 33 100.0 33 ................................. ACACGTTGGCCTTCATTGAATCGGTGAAGCCCG 218007 33 97.0 33 ................................G TATACCGTATGTCTTACCTAAACCACGCGCGCC 217941 33 100.0 34 ................................. TGGTCGGGATGATGGCGTCCATGATGGTGTCGCC 217874 33 100.0 32 ................................. TCTCTGTAACAAAAATAGAGCGTGTCGCTTGT 217809 33 97.0 34 ................................T CATTTGGCGGACGCGACGGCGCGAACCAGAAGAT 217742 33 97.0 33 ................................G GGCTCGTTCCCTTGCGGCTCCTGTGCCTCGTTT 217676 33 97.0 33 ................................T TCTCGTGGGAGTCCGCCGATCGGGCGTCGCGGG 217610 33 97.0 34 ................................T CGAAAACGCGCCCCACGGCGGACGTGGTGGGGAA 217543 33 97.0 33 ................................T GCGGACAATCGACCCGCCTGCAGGACGGTTTCG 217477 33 97.0 32 ................................T TCCGTTCGCTCGGCCGAATCCTCCTGGGCATG 217412 33 100.0 32 ................................. CCACCTGCTGTACCGTGCCACTGTTCGGGTCA 217347 33 97.0 36 ................................G CCTATCATAGTGTCGCTGATTAACTGGTTATCTGTA 217278 33 100.0 33 ................................. ACCGCGTCCGACCGGAACGTGGCCGTGCCGTCG 217212 33 97.0 32 ................................C GTATCGAACCCGCCAACGGCGTGAATAATCTC 217147 33 97.0 33 ................................G ATGACCTGTACGAAGACTGATAATCAGAAGGGA 217081 33 97.0 33 ................................G AGGTTGAGGACTGCGGGGGCACCACCCGTTACG 217015 33 100.0 36 ................................. ATAACGGGTACGCGGATACGGTGTATCTGACGAACG 216946 33 97.0 34 ................................G CCCTAAGCATGGCAAGGCTGATAGTCGCGTGTTG 216879 33 97.0 34 ................................C TCAAAACGGTACGTCAAGTGAGACAGTTGCAGGT 216812 33 100.0 33 ................................. ACGATCCTTTAAGGAGGAAACCATGACCGCGCT 216746 33 100.0 33 ................................. AGCCGCAAGACATCAGCCTAGACGATTATCTAG 216680 33 100.0 33 ................................. ACTTGCATCATAGGCGTATGCGCTCACACTCGT 216614 33 100.0 33 ................................. CCTGCACTTTGCGTGGCAGAGCAGGATACGCAT 216548 33 97.0 33 ................................T GGAAGCGGTCGACACGATCCTTGGAATCGTGGC 216482 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 38 33 98.0 33 GTCGCACCCCACTGGGGTGCGTGGATTGAAATA # Left flank : GCGTGGATTGAAATACGCCAGCAGTCCCGGCATCGCCACGCGGGATCG # Right flank : AGAACAGATTCGTAGGACACTGCGAAAAACAAATAGGGTGCTTTCCGCCATCAACAGCGGAAAGCACCCTATTCTTATGGTATTCTTATGATCTCTCTGTCCTAATTAGAGCACCTCACTCCCCAGCAATCGCGGCCTTGAGCTCCTCGACCTTGTCGGTCTTCTCCCACGGGAACTCAACGTCTGTGCGGCCGAAGTGGCCGTACGCGGCGGTCTTCAAGTAGATCGGGCGCTTCAGGTCGAGCTCGTCGATGATGGCGGCGGGGCGCAGGTCGAAGACCTTGCGTACGGCGGCGGCGATCTGGCCGCGCGTCACGCCTTGCTCGGTGCCGAAGGTCTCCACGTTGACGGATACCGGGTCGGCAACGCCAATAGCGTAGGCGATTTGGATCTCGACCTTGTGGGCCAGGCCGGCAGCCACGATGTTCTTCGCAACCCAACGGGTGGCGTACGCGGCGGAACGATCGACCTTGGACGGGTCCTTGCCGGAGAACGCGCCA # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.55, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACTGGGGTGCGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.80,-7.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 8094-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKSV01000026.1 Bifidobacterium longum subsp. longum strain 9 contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 8093 33 100.0 33 ................................. TCGGCCTCCGATTGGGACAGGCGCCACTGCTCG 8027 33 97.0 33 ................................G AGTTCGTCGCCGCCGTTCTTGGGCGAGCGGATA 7961 33 97.0 33 ................................C GTGACGGTGATGATGTCCTGCAGTCCGATACGG 7895 33 97.0 34 ................................T GCCTGTCCGGCTGGCCGTCATATCGCGCGATGGC 7828 33 97.0 33 ................................G TGGCTCCGACCGGAGTGGCCTGGACCCCGCCGG 7762 33 100.0 32 ................................. TCGGCTTCAACGCCGCCGCCAATGCGGCGAAC 7697 33 97.0 32 ................................C TTATTCGTAGGTTGGGATTCCGATGGCGGTCG 7632 33 97.0 33 ................................T GACTGGTGTTGTCCTGCCTCCACACCACGTCTA 7566 33 97.0 36 ................................G TAATCTATGGTGATCCAGGAACTGGTAAATCGACGA 7497 33 97.0 33 ................................C CGTATAAGCCGTATGAAGTGCCGTCGCCATCTT 7431 33 97.0 33 ................................T TCGACACCTTGCCGATGTAGGTCGCGGCCGCAT 7365 33 97.0 33 ................................C TTTCAATGTGATTGGTGATGTTGGTGCCGGCGT 7299 33 100.0 34 ................................. CCCAGTCATCTATCATGAGTTTTTTGCCGCCGTA 7232 33 100.0 32 ................................. ACGCAAGCTCACGTAGCAGATGATAGTACATG 7167 33 97.0 34 ................................T GCGTCGGAGCGGTGGAACACGGTAGCGAGACCCT 7100 33 100.0 32 ................................. CGTCACCGCCAAGGGTAAGCGCCGAAGCCAAC 7035 33 97.0 34 ................................C AGCACGACGTCACATTCGGTAGCTGCTATGTGAC 6968 33 100.0 33 ................................. TGCCGCCCAGTATGCGAGAGCGGCGCGCCACGG 6902 33 100.0 33 ................................. AGCGCCGTGACCTCTCCTCCGAGATAGCGCATG 6836 33 100.0 33 ................................. CTACCGGTGTCCAGCCCCTCGGGCAGTGCGAGA 6770 33 97.0 34 ................................C GTCTCGCTTTCCTGACGGCGCGACAGGAGGGCGC 6703 33 97.0 34 ................................C ATGCGCCCAGCTTACTTTGGCTAGCCTCGATGCC 6636 33 100.0 34 ................................. TTACTGCCGACCAGCGTACCAAGCTCACCGTAGA 6569 33 97.0 33 ................................C ACGGGGCGCATACCCGATATCAACGACAGGAAT 6503 33 100.0 34 ................................. AGGCGGTTGGAAGTTCCGCAAAAGCCAAGGGAAT 6436 33 100.0 35 ................................. ATCTCTCGCAGTTCGGGGATAATGATAAGCCCTCA 6368 33 97.0 37 ................................T CCCTCGTGCTGCAACCTGACGTGAACAGATCGCGCCG 6298 33 97.0 32 ................................T AGCATGTCGTCAAAAGTCCATTGATAGCCGTT 6233 33 97.0 34 ................................T TCCGTGATCCGTTCAGGTTGGTTCCGGTCACCGA 6166 33 97.0 34 ................................C CCAACCACCCGCACGGGTGGTTTTTTATGCCCGA 6099 33 97.0 33 ................................G GCTGCGATGTGTCTGGCCTTGCATTTGCGGCGG 6033 33 100.0 33 ................................. ACGAGACCGGCGGAGACCCCGCACAGGCCATCG 5967 33 97.0 33 ................................C GCTTCCGGGAAGGTCCGCGTCTGGGCCGAACCG 5901 33 97.0 32 ................................C CCTCCCCCGCCGAGATGACGCGGTGGCGTGAG 5836 33 97.0 33 ................................T CCTGTGGAGTCGTATCCGCAGTGTCCTGTTGAA 5770 33 97.0 33 ................................T CGGCATCCCGGCGTCAATCATGCTTGCCGCAGT 5704 33 97.0 34 ................................G TGTGTGTTCGACGGCGTGGACACGGCCAAGCTCT 5637 33 100.0 35 ................................. TCTTGGCGGCGTTGATGGCGTCAAGGTCTTTGAAT 5569 33 97.0 33 ................................T CGTTGGCCTGCGCCACCTCGTCGGAGATGAGCC 5503 33 97.0 34 ................................T CGTATCATCATACGCGCGTGGCTTATGCCACGCT 5436 33 97.0 33 ................................G ACCTTGAACTGGTGTCGGAAAAAGACCGTGGGT 5370 33 100.0 33 ................................. ATCCGTCCATTGTCGCGTCGATTGCCGTCAACG 5304 33 97.0 32 ................................G CTGAGGATTACGAGAGCTACCCACAGACGTAT 5239 33 100.0 32 ................................. GACCGTGGAAGCCGCATGGGGCACCAAGCCGA 5174 33 100.0 33 ................................. TATGTTGTGGTGTTAAAAATGGTGTTTGTTCAT 5108 33 97.0 33 ................................G GGATGAGGGTGATGGTTGCATCGGTGATTCCTC 5042 33 100.0 34 ................................. TTGTTGCGCTCAATTGAGCGCACGTCAAGCGGGC 4975 33 100.0 35 ................................. CTCAGGTCAGCAACACATCCGTCAACGAGACAATC 4907 33 100.0 34 ................................. CCAGGGAGCCAGAAGACAAAGCTGATCGCCGTCA 4840 33 97.0 33 ................................C AGTAACGACTGTCGTGAGTTCCGGGTGGCGCGC 4774 33 100.0 34 ................................. CGCAGATGACCATGCAGCCGCACACCGACATGCT 4707 33 100.0 34 ................................. CCACGGCGTGGAACGCCTACCCAAGCCACACCGG 4640 33 97.0 34 ................................G TTGACATAATAATTATAGCTCAATTAAGTAAGTT 4573 33 97.0 32 ................................T CCACGCACCTCGCCGAAGCCGGAGCCCCGGAA 4508 33 97.0 32 ................................C CAGATGCTTTGGGCCTCCTTGAGAGACGCGAT 4443 33 97.0 32 ................................C GTCCGCCAAGCCGACGGGGAACCAGAAGCTGG 4378 33 97.0 35 ................................C GCGTCGAGGAGGTGAACCGTTTTGACCAGCGCAAC 4310 33 97.0 34 ................................C AACCGGCAGTAGGCTGTTGCCGCATCGTGGTATA 4243 33 100.0 33 ................................. CGCCGGACACGAGGCAGTTGTTGTTGACCTGTC 4177 33 97.0 34 ................................C TCCACCCAACACACGTCCACGCCCTCGATACTCT 4110 33 97.0 33 ................................T CGCGTGAGCTGCGCGAAGAAGACCGGCTTATGA 4044 33 100.0 32 ................................. CGTGAAACAGACCGCGACGGGGGAGCGCAAAC 3979 33 100.0 34 ................................. TCCAACAGAAAACGCAGGTGACTAATGAGGTGTT 3912 33 100.0 34 ................................. CGTTTTGGCAGATGCAGGAAGCGTATGTGAGGGG 3845 33 97.0 34 ................................T TATACCTGATTGCTGTAGTAAGCCGCCAAGAATC 3778 33 100.0 33 ................................. GCCCGTTCGGCGCGAGGTCGGGGCATGTGGTGT 3712 33 100.0 33 ................................. TGGCGGAGTGCGAACGGTTGAGCGGCGGTGTGC 3646 33 100.0 32 ................................. ACGCCGACCAGCAGACCATCTCCGACGTGATG 3581 33 97.0 32 ................................C AGATCACCCCCGGCAACCCGAACAAGGCCGGT 3516 33 100.0 34 ................................. CCCTGTCCGCTTGCGGTAGTGATACCGCGAAGTC 3449 33 97.0 35 ................................G ACTCGCTTGGAGCCTCCAGTAAGCGACGTGGGTTA 3381 33 97.0 31 ................................C CAATTGGGAATACCTATGATGGAGCCAACAA 3317 33 100.0 32 ................................. GATGAACCAGCCCGGTGTGATAACCGGGCTGG 3252 33 97.0 32 ................................G CGATCCAGTGGCAGTGTTTACTGGATGTCACG 3187 33 97.0 34 ................................G ATAAGCCCGATAAGTTCTTCGCGTAGGGCGGCCA 3120 33 97.0 35 ................................C ACCTTCGCGAGCATCAACGACGCCGGGATGCCCAA 3052 33 100.0 33 ................................. GTTATCCAGAACGGCGCGCCCTACTCAGGCGGC 2986 33 97.0 33 ................................G ACCAGCAGATGAGCACCGTGCAGGCCAACACCG 2920 33 97.0 33 ................................C TACTGGTATGACCTCCTCGTCGAAGACCACCGA 2854 33 97.0 33 ................................T CTACTCCCCAATCGGTCGAGAGGTACAGGCGTC 2788 33 97.0 33 ................................C AGTATTGGACCGCGTATAGTGATAGCCATCAAC 2722 33 97.0 34 ................................G GCCACTCGCAATGCGTTGCACAGTCGGTCGAACG 2655 33 97.0 32 ................................G CGGACGACCCGGCCGGCTGGCGGCGCGCGTTC 2590 33 97.0 33 ................................C TTGACGGGCACAGCGAGGGCGGCAGCCAGACCG 2524 33 97.0 33 ................................G TTGCTGGTCATGGGTTACTCTTCCTTCTTGCTG 2458 33 97.0 33 ................................T GGAATACCGACGTGATACTTACCGGCCCCACCA 2392 33 97.0 33 ................................C GATAGTGTGATGGCACCTGAGAAGGGTGTGTTG 2326 33 100.0 31 ................................. CGCCACGAAGCCCTCGGCTGCTGGACGAGTG 2262 33 97.0 34 ................................T GATGAAGGCCACAACAATCTTGGAAAGCCATGAC 2195 33 97.0 32 ................................T CAAAGTTCGCGGCCGATTCACTCAAGGTAATT 2130 33 100.0 32 ................................. GCAAGGTCGCGTCCGTCGTCACGTCCAGCCTT 2065 33 97.0 35 ................................T TCCCGCGAATGGGAGAAACGCGCCAAGGACAACAA 1997 33 97.0 34 ................................T GCTCGGTGGTCACATATCCCTTGATGTTGCTGGA 1930 33 97.0 32 ................................C GACACGAACACCCGTTACAGCGCCTACCAGAC 1865 33 97.0 33 ................................T GGCTGAAATTGAGAGGCCTGGACGGCACCGTGA 1799 33 100.0 33 ................................. AGACACCCACGGGAATCGTAAAGTCCCAAGCAC 1733 33 97.0 34 ................................G CCACGATGCTACCCACGCTCAGCATTAACTCCAG 1666 33 97.0 33 ................................T CTGGCACACAAGACTGTAATGGGTTGAGTGGCG 1600 33 100.0 33 ................................. CGACCGTGAACCGTGTGGAGAACCGGCCGCAGA 1534 33 97.0 34 ................................T TGCCGGACACGCCGAACAGCGTGGCGGTGATATC 1467 33 97.0 31 ................................C CCTGCCCGGTACATGGTGCCGTGACATTGAG 1403 33 100.0 35 ................................. TCTGTGGCGGCGTGGCCACGGTTTTGGGCCTGATG 1335 33 100.0 34 ................................. ACAAGAAGGTCATAGAACTGAACCAGAACGGTTT 1268 33 100.0 32 ................................. AGGCGGGCGACGCCATCAACAGCCCTTGCGTG 1203 33 97.0 31 ................................C ACGACACCTACGACAACGTGTTTCCCTACGT 1139 33 97.0 34 ................................T GATGAAGGCTACAACGATCTTGGAAAGCCATGAC 1072 33 97.0 34 ................................G ACCAGGACGTGACCCGTGCCATCACCCGCGTCAA 1005 33 97.0 32 ................................G CCGTCGTCGGCAAGATCGACGGCCAGGGCATC 940 33 100.0 34 ................................. AGGACAAGGTAGGCAAGGCGTCGGTTGCTGCCGG 873 33 97.0 32 ................................T TCATGCGCTGCAGTGCCTGGCGTGACATGGCC 808 33 97.0 32 ................................C ACGACGACTGCGACTGCCAGATCGTGCCCGAA 743 33 100.0 32 ................................. CCATCGTCTTGCAAATGAACACGGCGCGTGAA 678 33 97.0 33 ................................T GGAACGGCCAATTGTGGGGCATCAGCAACGCGG 612 33 97.0 32 ................................C TTCCGCGAGCAGATCGGCCCAATCATCAGCGC 547 33 97.0 35 ................................T CGGACTGCATGTTCAACAACCTGAGCTTCCGCCCG 479 33 100.0 34 ................................. CCCAGGGCAAGGACCTCGCCAAGGACGTGGCCTC 412 33 97.0 32 ................................C ACTGCGAAGGAGTATTCAAATGAGCAAGACCG 347 33 100.0 32 ................................. TCACCACCGAACCATGCCAATACTGCGGCAAC 282 33 97.0 34 ................................T GGCTCAGTTGGTAACTCAGATGGACAACGTAGAC 215 33 97.0 33 ................................C CCGGCCTTGCTCGCACTATCCGCTGCGGCTTGA 149 33 97.0 34 ................................T CGATGTTTGACCCGCGCGTGGTCGGAGAGGCAAG 82 33 97.0 0 ................................C | ========== ====== ====== ====== ================================= ===================================== ================== 122 33 98.0 33 GTCGCACCCCACTGGGGTGCGTGGATTGAAATA # Left flank : GACGAATCGCAAGATAGCCTGCGTTACTACAATTTAGGGGCGAAGTATTCTTCGAAGATTGAGCATCGCGGAAGACAGCGGCACCTGCCAATCGATGACGTGATGATGCTCTAATGTCGGTTCGTGTGACGGTCTTCCATGATGACTGGGCAATGCAAAACCTTACTGTGATGAAGACCAAGGTGGATAAAACGAGGTAGGACAGTATAGGACGATACGATTAAAATCGTGGCTGAGCATCGATGCTTGATGCTGCAGCCATGTGACCAGCGCGAACTCTGAGTTCTCATGAAATACTTGTTCTTTCGCACTGAGATTAATGAATGCTTGGAGACTGATTATGTTCTCCTCGTCGTTTGATAACTCAAAAGTGGATGGTCTGTTGATGTTTTTGGTTCGAGAATTTGTGTATTGAGCGATGTACATGGATTTTCGCGATAAAATCAGTTTTGAGAACAGACGGAGCTTCCGTATTATGGAATGCTATGCCCATTCTCGCG # Right flank : CTCTTGAACAACTAAAAAAGAAAGAATCGCCCGGGTCGCACCCCACTGGG # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.43, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACTGGGGTGCGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.80,-7.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 300660-301004 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKSV01000026.1 Bifidobacterium longum subsp. longum strain 9 contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ====================================================== ================== 300660 27 66.7 39 G..C....C.....C...GCC....GA ACCGCCACGGCGGTCATCACGATCGCCACGGTCATCGCG 300726 27 96.3 54 ........................A.. ATCGTCACGGGAGTCGCGAGCATCACGGTCATCGCGATCGTCGAAGTCACGGTC AGA [300732] 300810 27 81.5 33 GG.A..A.................A.. ATCATCGCGATCATCGCGATCGAAGTCACGGTC 300870 27 100.0 21 ........................... GTCGTAATCATCCTCGAAGTC Deletion [300918] 300918 27 100.0 30 ........................... GTCACGATCGTCGAAGTCACGGTCATCGCG 300975 27 85.2 0 ..............C.....C....CG | GC,C [300993,300997] ========== ====== ====== ====== =========================== ====================================================== ================== 6 27 88.3 36 ATCGGAGCGACGGCGACGCGGACGGTC # Left flank : CATACGGCATAAAGGCCGGGCTCTCACAAGGGCCCGGCCTTTGTTGTTGCCACAGTGATCAACGCCCATGAGTACCTTCGATGATCATCCGCCATTCTTGATGCATGGGAATAGTTGTCAACCGACAACTAAACGTACATGGCGGCAGCACGAGTGCCTTATTCAACATCGAAATATGCAGCGCGAAGAAGCCGAAAAACCAAAAAGGCTTCTATACCGAATGAAACGGTATAGAAGCCTTTTGGTTTGCGATCAAGCCCTTCTCACCCGAGAGAAGCTAGAGAACGATCAGTCCTCGAATGCCGAACCGTTAAGCGGGAAGCCCTACGGGCTTCCCGTAGGTGAGGGGAGCGGCTATGCCGCGACCGATCCGTGAGAGGGATTTAGTCCTCGAACGGATCAAAGTCGCGACGGACGCGGCGACGCGGGCGCTCAGTACGCTCTTCGCGGTCGGCGCGGTAGTCGTCGTAGTTGTCGTCGGTGGCGTAGCGCGGGTTACG # Right flank : GATCGTCACGGTCACCACGGCCACGGCCGCCACGGCGGTCATCGCGATCGCCACGGCTCGGGCGGGCGTTGTTCTCCTGATCCTCGAAACCAGGAATGGCCAGGGAGATCTTGCCGCGATCATCGACACCCTGAACGATCACCTCAACGGTGTCGCCTTCCTTGAGCACGTCTTCGACAGCGTCAATACGCTCGCCGTTGGCCAGGTTGCGGATCTGGGAGATGTGCAGCAGGCCGTCGGTGCCGGGGGTGAGGTTCACGAAAGCGCCGAACGACGTGGTCTTGACGACCTTGCCGTTGTAGGTTTCGCCGGCCTCGGGCACGTGCGGGTTGGCAATCTGGTCGATGATGGCCTTGGCCTTCTCAGCAGCCTCGCCACCCTCGGAGGAGATGAAGACGGTACCGTCATCCTCGATGGCAATTTCAGCGCCGGTGTCTTCCTGAATCTGGTTGATCATCTTGCCCTTCGGGCCGATGACTTCGCCGATCTTCTCAACCGGG # Questionable array : NO Score: 4.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:0, 6:0.25, 7:-0.43, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGAGCGACGGCGACGCGGACGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGAACGACGGCGACGCGGACGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //