Array 1 209016-208447 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDDK01000007.1 Pectobacterium atrosepticum strain PB72 PB72LOC_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 209015 28 100.0 32 ............................ AGCTCCGACCGACATGCGCTTAAAGGCGGCGA 208955 28 100.0 33 ............................ ATGCAGATATTGTAACTAAGCATCATATTGCAT 208894 28 100.0 32 ............................ TGTAGGCCATATAACAAATACTCAAAGATAAC 208834 28 92.9 32 .............T......T....... TTGCGATTGGCACCGTTAACCGCTCAGTGACC 208774 28 92.9 32 A............T.............. TCCAGTACTCAGGATCGTGTTGGTACGATAAA 208714 28 96.4 32 .............T.............. AGTTCTGACACTCGTTAAACGTCATAACGCGC 208654 28 100.0 32 ............................ GAAATATCCACCTGGACACTGTCCATAAAGAA 208594 28 96.4 32 .............T.............. ACGACGGATAGTCTCTGTCTGACGAACGCAAC 208534 28 96.4 32 .............T.............. GCCCTGAAAAAAATGGGTTGTGATGACCATGC 208474 28 78.6 0 ............G.......T.C..TGT | ========== ====== ====== ====== ============================ ================================= ================== 10 28 95.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CCCTCTTCGACTACATCCTGACGTTCTGTCATAAAGTCTGCGTCAGCACGCTCTTCTTGCAGAAAAGAATGCCAATTGGGTTTGACTGGGCGCAACATGATGGTATCCCCTTCACGCACGATCTCCAGTTCATTGACGCCTTCAAAGTCCATATCACGCGGCAAGCGAATAGCACGGTTATTACCATTTTTAAATACTGAGACAATACGCATAATGCACCTCCTCTTAATACAGAATTCAGCAAGCCGCTAGCCTGACTAAAACATAGGTTAAGTATAGATTTGAATCGTTCTCTTGTATATCCGCGGCATATGTACGCACCTAACATAGGTCTACCGAGAATAGATAAAATCGTTACCACAGGGTTGGCACCCTTTTTTCATGGACGCTTGTAACTCATTGATTTTTAATATCGATTAAGCGCTATGATAAAAAAGGGTTTTTCGGGAGAAATGGTTTATTTTCTTTTAAAATTAGGTAACTACCGTAAAATAGGAACG # Right flank : TTATCGAGATAAGTCTCTAGCACGGCTCACCTCAAGGGAGTTATTCCCCATTCAGCGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAAATGCCCTGCCAAGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGAATCGTCAGGCTATTTCCTAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATAAGTATGGCGGTAGTAAGGTTCATCCTCCGGCACTAAGCGATTAAAAAAGCTCTCGAAATCCTGCCGCACCGTGGGATCGGCATTCTCATTAATCGTCAGCGCCGCCGAAGTATGTTTGATGAACACATGCATCAACCCGACCTTTATCTGGCGCAGTGCGACAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCGTCCACATGATTTGGCCTCTCGCTATCAGGCTTCGCGTGCCAGAATAG # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 219116-219865 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDDK01000007.1 Pectobacterium atrosepticum strain PB72 PB72LOC_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 219116 28 100.0 33 ............................ TGAAATGATCGCTGCACGTCCGCAAGGTCATAA 219177 28 100.0 32 ............................ TGTTGAAGCTCGATCGATACTGGAAGGTACTT 219237 28 100.0 32 ............................ GAGGTAAACCCTGATGAGTTGCTGGCTGATTT 219297 28 100.0 33 ............................ TGATAAGCCAAAGACCACGCATACATGGCCTTA 219358 28 100.0 33 ............................ GCAGGGTGTTCTGCGTTATCTGCGCGTCAACTA 219419 28 100.0 32 ............................ TGCATCTTGCGTTGAGTCGAGTTTATTCAGTT 219479 28 100.0 32 ............................ TTATTGAGTACGCCGCAAAACTAATTAAATAA 219539 28 100.0 32 ............................ AAACTTCTAATGTCGTTCATAGTGGATAGCGT 219599 28 100.0 32 ............................ AGAGAAACCGTAAGGAGTCGCCATGTTCCATT 219659 26 92.9 32 ..........--................ TTGCTGATTGGAGTAAGCACAACGTGCATCAT 219717 28 96.4 32 ...........C................ AAGCGTAGTACAGAGCAACCCCGAGGCGGACG 219777 28 96.4 33 ...........C................ ACAGACAGAAGGTGCATAAAAAGGAAGCCTCAC 219838 28 85.7 0 .....................C..TTC. | ========== ====== ====== ====== ============================ ================================= ================== 13 28 97.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GAGTTACGGAGGTACCCGTTCCCAACATCACCACGCTGGTATTGGCGATGGGAATATTCCAGTACAGAGACTGGTTTCCTTCCTCCGTGACATATTCGACACGGCCACCGTTGACGAGAATGCGGCAATGTTGGAGGTAATAAACATTGGCACGTTTGGAATGCAGAATGGTTTTTAAATCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGTAATAGATAATAACCATGACGCCAGCGAAATAAATCGCAAGCTAACTATTTGATAAGGAAAAATATAATATTCAGAAAACTGATGAAAATCAGCCTATCACAGTTGTATGTGAAAAATGATGACCGCAAAAAATATTACCCAAACGTAGACCCTTTTTATTTGGCCTATTTCACAGGATTAAAAATCAATGAGTTACAGATAGGGTTAAAAAAAGGGTTTTTACGAAGAAAATGGCAATTGCTGCTAATAAAACAAATCGTTAGAGTGATCGGGCTACA # Right flank : ACGGTACTCAGCGCTGCTGTCTGGTTATTATCGAGGCTGCACTGCGCCATCGCTCAATGCCTGTAGCTCTTAAATAACGTATTGTTGATGGCTTATTTTCGTAATATTTTCAAGTAACGGGTTTCTTTTGGTGCGAATGGAAAATTGCAGATTGGACGTTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTGACCTTACAGGGAAATAGTTCGTTGACTTAAGTAAAATTCAAAGGAGTGAGTCACTTGTGAAATACGATCCGGTTTTAAAAACGCTTGTTGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAACAGCATGCAGATATTAACTATCAGAAATTACATGCTCAACTAAATGAAATAAATAACGATAACATTCATGCCATATTGACTGCGCAGGAAGCGACGTATTTCTTACAAACGTTATGCACACCTAATCCTAATCAATCGTGGAAAACAGCCATGTTTGGCTGTACCGATCCTC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //