Array 1 3-823 **** Predicted by CRISPRDetect 2.4 *** >NZ_APAD01000214.1 Salmonella enterica subsp. enterica serovar Nchanga str. CFSAN001092 CFSAN001092_43000004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 ............................. CGCATTATTGATTTGGAATTCCTGCCGACCTC 64 29 100.0 32 ............................. ACTGATACAGTGACGAATGACGAACGCAACGC 125 29 100.0 32 ............................. TCGCCACAAAGAGGAGGCCGTAGCGCTGGCAA 186 29 100.0 32 ............................. CCTCATAATTAGTTAAGTGGTGGCGGTATTGC 247 29 100.0 32 ............................. GTTGGTTCAGTTAATTATTAGTGAGCTGCGGG 308 29 100.0 32 ............................. ATAACCACAACCACTAAACCAGATATCCAGAT 369 29 100.0 32 ............................. TTGTTTTTGGCTTTTTCGGCGGCGCTGGCGTC 430 29 100.0 32 ............................. CAGACCAGTTGCAACCGCAGGATGGCCCAGCA 491 29 100.0 32 ............................. CCTCCCTAATTGTTAATCTTTTTTGGGGGCCG 552 29 100.0 32 ............................. CTGTGATGCTGTTCTGTGATTAACGTACCGTC 613 29 100.0 32 ............................. GTATTCAGCTCTTGCCGCAATATGCCGCTCAA 674 29 96.6 32 .........T................... AGTTACTGATGCAGACTGCGGATCTTAATCGG 735 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 796 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCTGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAACTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTGTCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGAGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTACCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 15379-14922 **** Predicted by CRISPRDetect 2.4 *** >NZ_APAD01000365.1 Salmonella enterica subsp. enterica serovar Nchanga str. CFSAN001092 CFSAN001092_21000002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 15378 29 100.0 32 ............................. ACGGGTTTGATATCAGCCTCACCGGATTTGGA 15317 29 100.0 32 ............................. AAACTGCTCGAAATTGTCGCCTATTGGGAAAT 15256 29 100.0 32 ............................. ATGCCATGTACGCCCCGTTTTTCTCAGCGACC 15195 29 100.0 32 ............................. GAAAATCACCTTGATAGTTCTGGCCGCGAGAG 15134 29 100.0 32 ............................. CCTGGGGGCGTATGACGGTGTGACGGATGAGG 15073 29 100.0 32 ............................. CGGTACAGCGACTACAGCGTGTTTTCCGTGGC 15012 29 100.0 32 ............................. GATGACCCGTATACGTTCAAAATCAAAATCTA 14951 29 100.0 0 ............................. | A [14924] ========== ====== ====== ====== ============================= ================================ ================== 8 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //