Array 1 783463-780558 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWDR01000001.1 Legionella pneumophila subsp. pneumophila strain L01C.1 L01C.1_contig000001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 783462 37 100.0 34 ..................................... TAGATATAAAAAGATTAAATCTTCTAGCGCACAT 783391 37 100.0 34 ..................................... TCACTACTCCTGAAGGTTATAATTTTTGCTATAA 783320 37 100.0 36 ..................................... TTCGAATACAATCCTAGTGTCTCTGTGTGAATTAAG 783247 37 100.0 34 ..................................... CAGGCACTGGTTCACTAGACACTGTAACATCTAT 783176 37 100.0 34 ..................................... CTACCAGTTAATCGTAACTCAATCTCTTTTTCAA 783105 37 100.0 34 ..................................... ATAGAATACATAAGTGCAAATTATTAAATGTTAC 783034 37 100.0 34 ..................................... TGAATGTAGAAACCAGATGCCACGAATTATTAGA 782963 37 100.0 35 ..................................... TTTGTATAAACGTTCTGATATGACTTAGGTAATCT 782891 37 100.0 34 ..................................... CTAACCTGATTGCTCAACAAATAATGCTATTGGC 782820 37 100.0 34 ..................................... TCACTTTAGGCCAACGCCGATCCTCCGCTTCGAA 782749 37 100.0 35 ..................................... CTCACATCTTACCCTCAGGGCGGATATTGTGAATC 782677 37 100.0 33 ..................................... ATTAATAATATTTTAGAAGATTGGCACATAATA 782607 37 100.0 34 ..................................... TGACGCAAAGGATTTATTAAAAACGCCTTGTAAT 782536 37 100.0 31 ..................................... ATTTTACCTTTTAACACATATTGATAGGCGT 782468 37 100.0 36 ..................................... TCCATAACTGAAACGTCCTTATGCCTCAACATAATG 782395 37 100.0 36 ..................................... CTATTGCAAGCTAGTTTGATCGTGTTATTATAAGAA 782322 37 100.0 36 ..................................... TGACAAACGTTTGTTTTTTAGACACAACACTAAAAG 782249 37 100.0 35 ..................................... CCTGAAAACCCGCCACAACCCGCGCCAGACTTGAA 782177 37 100.0 34 ..................................... ACCAAGTCGAAACAACATACCGAGACCGTGTTGA 782106 37 100.0 35 ..................................... TACATTGTTACGTTCATTTCACTCAGTTTTTCATA 782034 37 100.0 34 ..................................... AGCAATAACCCAAAGTTTCGCGCGCGTGCGCGGG 781963 37 100.0 37 ..................................... TTATAACATCGGGATGGCGGTTTATTGGTTAAGTAAC 781889 37 100.0 34 ..................................... TTCTTTTTTCAGATTTCATTTCCTTTTCCTTGTG 781818 37 100.0 36 ..................................... TTTTTATCGTAAGCTTGATTAACTAGACATCTACTA 781745 37 100.0 33 ..................................... GTTTTAATTTAATCATTATTGCTTCCTTATTAA 781675 37 100.0 37 ..................................... TAAGATATTGGTCGATTGTTTGCAAGACGTCATCAAA 781601 37 100.0 34 ..................................... CTAAATCAGCAGTCATCAAAACCCATATGATTGT 781530 37 100.0 31 ..................................... TTCTCAGAATGGGAACGTTACACATCATATT 781462 37 100.0 34 ..................................... TTAAGTATACGTTTCTTTGGGCTATTAGTTCTAA 781391 37 100.0 36 ..................................... TTCTCATATTTTAAAACAATAGAGTAATTCATTTTA 781318 37 100.0 35 ..................................... AATCTTAATTTATGCGCCTTACCTTCTGCTTCATC 781246 37 100.0 36 ..................................... TATACTTAGACAATATCATCATTTCCTATGTTTCGA 781173 37 100.0 36 ..................................... GCTATTCCAGATAGGTAGTTGTTTAGAGCATTTTGT 781100 37 100.0 35 ..................................... TTCGATACTCCTTAGCGGTACTTGCTAAAGTAGTT 781028 37 100.0 35 ..................................... AAATAATTCTTGTGACTCACGTGCCGCCATTTGAA 780956 37 100.0 36 ..................................... TAGGAATTGATTGGGGTAACGCCATCGCCATAGAAG 780883 37 100.0 33 ..................................... TTACTTCATGACCCGGACATTTTACTAAAAAAT 780813 37 97.3 34 T.................................... TCCTATACCTTGTCACAATTTCCTCATATGGCTC 780742 37 100.0 36 ..................................... CATAATTGGGAATTGGTGTGAAATGCTCACCGTCCG 780669 37 100.0 38 ..................................... TTAATTGCGCCAGAAACAGCACCATTTATGGTTACAGC 780594 37 86.5 0 .......................TT...T.A.....T | ========== ====== ====== ====== ===================================== ====================================== ================== 41 37 99.6 35 CCAATAATCCCTCATCTAAAAATCCAACCACTGAAAC # Left flank : TCTTTTGCATCAAAAATTAGTTTAGGTCAAAAGATGCAACTGACCGCCTATGGAATGCTTTCCGAACTGATTTTTGAAAAACCATGTACCAGAGGCTATATTATTACTGGTGAAAAGGCCAAAGCCAAATTAATAAAAATTGACGAAAAATCAAAGTTCAAAGTGATTGAAATTTGTGCTAAAATAAAGAAAATTTTTGGCACAGAAACATTACCATACAGCACTGCTAATGGACTTCAATGCATTCAGTGTGAGTTTCTAAATCACTGTAACGATAGATTTTGAAATCGTTATATGCTCGCTATTAAGACGAGCATAGAAAAACGATTCAATCTTTAATTTTGTTGATTTCAGGGTATCGAAATTTAGATGATTTCTAATTTAATTATTGCCTTCTTTTTCGAAAAATCAAGCCTAAATAATGCAATTTGCTATTTTTCGAAGAAAACCACTTTTAATTCCTCGTGTTTCTTTAAAATAAACAAAGAGTTAAAATTGCC # Right flank : ACTCCATACTTTATTCTCTGTATACTATTATAGTAAAAATCCATGGGGTATTATTTTATATAATTAAACAGAATTTAATTTTGTTGTATTTTAATTTCTTCGACAAACATCAGAAAATATAATCGGTCATTTTTACCAATTATTTGTAAATGTTAGATGCAGTTTTAGGGGCACAATAGGTCATATTTGGTTATATTTGCTTTTTTTCATCTTATTTATTTTATAATTAACTTGATAATTATAAAGTGCTATTTTACTCTGTTGCTTTTTCTGACAATACCTGTCTTTACAGATTATCTTTGTAACAAATTTTCTTAATTTAACCTCAGCTCGATATAAGAATAAGGTTATGTGATTGATGATTCAAAAGCCAAACCGCAAGTCAAATTAGTACGCGGTCAACTTCAAATTATTGCATCAAGGAATATAGAACATAGACGGCAGCTGTTGTCAGATTGGTATAAGCAGAAAGCTTTTGAAGTTTTTAGCAAAAGGTTAGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAATAATCCCTCATCTAAAAATCCAACCACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //