Array 1 7950-6574 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEMH01000110.1 Thermus scotoductus strain 16_S16 NODE_19_length_19935_cov_39.7582_ID_37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 7949 29 100.0 33 ............................. TCCCCGGGCAGGCGGATGCGCCGATAGGTAAAC 7887 29 96.6 32 ............................T CTTCCGCCTCACGAAGAAGACGGAGATTTTGA 7826 29 100.0 33 ............................. TATAGTCGGCGCTGGCAAGGTTCCCGCATATCC 7764 29 100.0 32 ............................. GGAGTTTCTGGCCTGGCTCCAGCAATCCCGGA 7703 29 100.0 32 ............................. GGGCCGAGGAGGTTTGGGTAATCCCCCTGACC 7642 29 100.0 32 ............................. GTCTCCCCTGCGAATCTCCGCCCCGGGGACCT 7581 29 100.0 32 ............................. CGGGTGGAACTGGGGCCAGTGGACACCCTCCT 7520 29 100.0 33 ............................. TTCGGGAAGCTGGCGGCGGGCCTCCTCAATCTC 7458 29 100.0 33 ............................. CCTGGTGGGGGTGCACCAGGCGTTGAGCATTTA 7396 29 100.0 31 ............................. TCCCAAGCGGGGAGCACCTTTATTTCCTCCC 7336 29 100.0 32 ............................. GTTAGCGCCGACCCCGTCCATCCCCGGGAGGC 7275 29 100.0 32 ............................. CGCCGGATGCGGTCTAGCTGGCCGACGTCGGC 7214 29 100.0 32 ............................. CGGATACACGAGAGGCTGGACCGGCATCAGGA 7153 29 100.0 32 ............................. CCCAAGGCCTCGGCAAGGGAAGGCAACTCCCT 7092 29 100.0 33 ............................. GACTTGGTCCCAGGGGACAGGCTCATCCCGGCC 7030 29 100.0 32 ............................. GCCGCCTCGTCAGCGGCGGAGGAGGCCTCCAA 6969 29 100.0 32 ............................. GGGTCGTAGACGATGTCCCCCTCATCCGTATG 6908 29 100.0 32 ............................. AGTTTATCCAGGATTTCACTGATGTGAACGGG 6847 29 100.0 32 ............................. GCCCAGTACGCCAGCTACTACGACCTCAGCGA 6786 29 100.0 32 ............................. GAGGCGGTTGAGCTAGTGCCCGCCCCTGCACG 6725 29 100.0 32 ............................. AAGACGCAATCCGCCTCCCCGCCTTTAACCGA 6664 29 96.6 33 ............................A GTGTCGTTCAAATACACCGGGTACAGCCCGGAC 6602 29 93.1 0 ..............C............T. | ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.4 32 GTAGTCCCCACGCATGTGGGGATGGCCCG # Left flank : TCTCATACTGGCGGGTCGGGGCCTGATGATATAAGAGCCTCCCGGCAGCGAAAAGGGCTAGGGCCTCCACCGGATGCAAGGTGGGAGGTCGGTCCGGAATGCGGTAAAGGCCGCGGCCAAGCTGCTCTATCCTGTAACCGGCATGGGACAGGGCCTCGAGGTCCCGCTCCACGGTGCGCACGCTCACACCGTAAAGCTGGGCCAGTTCGGAAACCCGGTGCGGGCGAAGGCTAAGGCGCTCCACCAGGGACAAAAACCGTTCCGCCTTGGACTTCGGGTCCATAGTTGGAAGCATTATAGCCTAAGTTCCGCTATACTGGGGTTACCTGCCCTATCCCTAGCTAGACGTTCAGGGCACCTTGGGGCAGGGGGGGTTCTTGACAAAACATCCCTCGCTTCTCACGGGGTTCGAGGCTTTAAACGGGCCTATTGTCTGGAATAGCCCCCTTTACAGACACATAGAGGGGGGTCAGCGGGGGTTTTTGCCGTCTAGGTCATGT # Right flank : AGAATGTACAAGGTTGCCCCGTAGGATAAGCCCCCCAAAGCTTCGGCCAGGAGGGCCTCCAGCCTTCGCTGGAGGTCCATTTCCAGGGGCCGGAGGGCTAGCTGTAACGCGCCCGTAGGCGTGAGGAGGGAGAAGTGGAGAGTCGCCCGCCTGGGCGTGGGGCTTTCCCTGGAGAAGATCTACGAGAGTGTGGAGCTAGGGACTTCTTTCCAGGCCGACTTGGGGGCCAGGTAGTACCATGGAAATGCCATGGGGCCCGAGGAGGTCAAGGCCAGGATAGGGCCTTACCGGGAAGAGTTGAGGGAGCGTTTTGGGGTGGAGGCCCTCTACCTCTTTGGCTCCTCGGCTCGAGGGGAAGCGGGTGAGGGAAGCGACGTGGACCTTTTGGTGCGCTTTTCCCGTCCCCCGGGCTTTCTGGGCTACATGGGCCTGAAGCTCTTTCTCGAGGACCTTCTAGGCAGACCCGTGGACCTGGTCATGGAGCACACCCTGCGGCCGGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCATGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 18099-18860 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEMH01000110.1 Thermus scotoductus strain 16_S16 NODE_19_length_19935_cov_39.7582_ID_37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 18099 29 100.0 33 ............................. GAGCGGGGGCGGGCTCAGGCTGGGGTTTGGGGA 18161 29 100.0 31 ............................. GCCGCCCAGGCCTCCCGGATGCGGTCCTGCA 18221 29 100.0 32 ............................. TACGGCATCACCCCTCCTACACCCACAGGATA 18282 29 100.0 32 ............................. GAGGTGAAGGAGCTGGAGGCGGAGGCGGTGGC 18343 29 100.0 33 ............................. GGCGAGACGGGCGCCATCGGCCCACTTCATGAC 18405 29 96.6 32 ............................T ATTACCCCCACCACAGCCCCCCACGCCAATAG 18466 29 100.0 32 ............................. ACGTCATCCCACGAGCCTATTTGCCGCCACCC 18527 29 100.0 32 ............................. TGCCAGGCCTCTGATCCTCGAGGGGTACGGCT 18588 29 100.0 32 ............................. GGGAGGGGGGAGCATGATGGGGTCAAGGTCCT 18649 29 100.0 32 ............................. CCCCATCGCCATCACAACCGCCATCACAGGGC 18710 29 100.0 32 ............................. GCGGGAGCCCTCATCTCCCGGCATCCGAAGGC 18771 29 100.0 32 ............................. AGTTGGGACCGCTTAACGCTCAATAATCCAGC 18832 29 82.8 0 ........G.T...G.C..C......... | ========== ====== ====== ====== ============================= ================================= ================== 13 29 98.4 32 GTAGTCCCCACACGCGTGGGGATGGCCCG # Left flank : CCAGAGGAAGAGGTGGACGAGGAGGACCCGACCCGTCCGGGTGGCCTGTGGGACCCGGAGGGAGTGGTGGAGGGTGGGGTGGCCTATGGTGGTGATGATCCTGGAGAGGGTGCCGAGGAGCCTGAGGGGTGAGCTTACTCGGTGGCTGGTGGAGGTGGATACTGGGGTTTTCGTGGGCCGGGTGAGCGCTGCGGTGCGGGAACTCTTGTGGGAGAAGGTGGTGGAAAAAGCGGGTGAGGGCCGCTGCGCCATGGCCTGGCGCACGAATAACGAGCAGGGCTTCGCCCTCCGGCTGCACGGGTATCAGGACCGGGTCCTCAGGGATTTTGATGGTATAGTGCTGGTAGCGGTGCGCAACGCCGAGGCTATGCGAAAGGCGGATAAGTTAAATGGCATAGCCCGGTTCGCACGCGGGGATCTTGACAGTTAATCCTTAGACTGGCTCCCTTTATATACACATAGAGGGGGGTCAGCGGGGGTTTTTGCCGTCTGGATCATGT # Right flank : GGTAAGGGGAGCAGTGAAAAGGCTTTTGCGCAAGCGCTAGAGGGCAAGTAGCTTCTCGAGGGCCTTGAGGTAACGGCCCTGTCAAGGAGCCCTCCCCACCGGGTTTGGGGCCACTCTCCGCTTAGGGATGCGGGCTCAAGCCTAATACCCTCCCCGGGCTAAAGCACTGGGTGTGGTGCGCGAAAGCCATCTTTCGCGAAGGACAAACGGCAATCCTCTCTGCCCAGTGCTGGGGGGTTCCGCCACCGGGTTCGAACCAGATCAGGTAGGGCATATTCCTCCTCTTCCTTTGAGTTTACCCGTGGTTCGGTGTCGGGTGTGGGTTTTTTGGAAAAGGACAGGGATTGTAAGGCCCGTTAAAGCGGGTTGGCTGGGGCGGGTGTGCTAAGACACCGGGGGTTTTGGGTCTATCCGGGTGGGCTGTCCGCTTATCTTGCCCCCACGAAACCAAGGACTTTAGTCCGGGGAGTCGTCACCTAATCCTCGCACCCCACCCCGTC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACACGCGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACACGCGTGGGGATGGCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6535-6869 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEMH01000393.1 Thermus scotoductus strain 16_S16 NODE_86_length_8873_cov_30.6058_ID_171, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 6535 29 100.0 32 ............................. AGCCACAGGCTCAGCCCGCACCGCCTTACCCC 6596 29 96.6 32 ............................T CAAGCGCCCCCAAAACCGGCTGCTGTGCCCCC 6657 29 100.0 33 ............................. TAAAGCGTCCAGGTGGGCGGTTGCGCCCATCGC 6719 29 100.0 32 ............................. CCACCGGGCCCGGCGTAGGGCCCACCGCTTGC 6780 29 100.0 32 ............................. ACCGGCGCTACGAGGCGCTGGAGGCCCTCCTC 6841 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 6 29 99.4 32 GTAGTCCCCACACCCGTGGGGATGGACCG # Left flank : TTGGGGTAGGGAGCGGGCGAGCTTCTCCAAAGCGGTGCGGTACTGGCGGGTCGGGGCCTGGTGGTAGATGAGCCTTCCGGCAGCGAAAAGGGCCAGGGCCTCCACGGGATGGAGAGGTGGGGAACGATCCGGGATAGCGTACTCTCCTCGGCGGCGGCGCTCCACAGGGTAGCCGAGGTCTATCAGGGTCTTAAGGTCTCGCTCCACGGTACGTTCGCTCACGCCAAAGCGCCGGGCAAGCTCTCCTACCCGCATAGGCCGGAGCTTCAGCGCCTCGGCTAGCTGAAGCAGTCGGGCGCTTTTCGCTTCCTGTCCCATATCAGCAGTTTAAGGGAGTTTCCGGAATTGCTGCGTGAAGGTTAGCCGTGCTAGACTACAGGTGGTGCCCCCTTTTCCTCCCCTTCTTCCGGGGCTGCGGAGCTTGACGACATTACCTGTTCTGCCTCCCGAAAAGACACATAAAGGGAGGTAAGCGGGCGTTTTTGCTGTCCTGATCAAGT # Right flank : GGAAGTGAGCCCGGAAAGGGCAACTGGGGACGGGGTCAGGGAGCCTTTTAGAGCGGGATATGGCCCATGGGTCAGGGGTCACGGGGAAGCATACCTTGCAGCCCCCGTTCTTCAGAACGGGGAGTTGTCACGGCTAAAGCGGGAAAGGGGGTCCGGTTCCCCCACGAAGGCGTGGGCGGTCATGGGGGAATGAGGACGGCTTGTTCGGGAGCCAGGTGGGTTTCGCCAGCAAAACCCCCTTGCCCTTGAGGACCAAGGCCACCTCCAGCCTTTCCCGGTGGTAGGGCAGGGACTGCTCCTTAACGGTACAGATGAGGACCGAGGTGCCCAAAGGGGTCTCCCCCACCCCCTGGGCGGCGAAGGGCCGGCCCGGGGGCACGGAGAAGTTGGCGAACTCCCCGGGGTAGCGGCGGAAGATCCCCTCCCCCGTGGCCGGAACCAGGGCCCAGGCCCGGCCGGCCAAGGCGGAAACCAGAACCCCACCTGCAACCTGCAAGAAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACACCCGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACACGCGTGGGGATGGCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.60,-12.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1875-747 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEMH01000045.1 Thermus scotoductus strain 16_S16 NODE_140_length_5343_cov_53.2092_ID_279, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 1874 29 100.0 32 ............................. GAACCCACCAAGCCCAAAGAAGCCGAGGAGGC 1813 29 100.0 32 ............................. CAAATAGGCGTTCCGCTTGAAGCTTGGTGGGC 1752 29 100.0 32 ............................. GAGGCCTCCTCCCCCTCCAGGGGCGCGAAGCC 1691 29 100.0 32 ............................. GGAAGAGGTGCGTAAGATGGCCCCCGAAATAA 1630 29 96.6 33 ............................T GGCAGGCGCCTGAGCCGCCGCGGGAGATGGTCC 1568 29 100.0 32 ............................. CCTGGCGGCCTGCGACTGGACCCAACTCCCCG 1507 29 100.0 32 ............................. GGTGCCACGAAAGAGCTCGTGGGCCCGGTGGA 1446 29 100.0 32 ............................. GAGCTCATGGCCCTCCTCAAGGCCGGGGCCCA 1385 29 100.0 31 ............................. AGCCTGCAGACGCTCAAAGCGCACCGTCAAC 1325 29 96.6 35 ............................T GGTGGGGGCTTCCGTCAGCAGGCTGGAGCTTTCCC 1261 29 96.6 31 ............................T AGCCCGTCCTGGAGTACGGTGCCGGGCGGCC 1201 29 100.0 31 ............................. GCTTCCCAGGCGGGCCAGGGCCACTTCCAGC 1141 29 100.0 32 ............................. CAAGGTCACCCCGCTCGCTCCCAGGCGCTGGA 1080 29 100.0 31 ............................. ATACGTTTCGCGCACATACAAGGCCGCATCC 1020 29 96.6 31 ............................T ATCGGCGCCCGGGAGCTCCTCGCGGAGCCCC 960 29 100.0 32 ............................. CCGATCCGCGCCTGCTCTAGGTCGGCGTAGGC 899 29 100.0 34 ............................. CAGTACCTCAGCGGCCCTGGCCTACATGCGCCAC 836 29 100.0 32 ............................. CAAGGTCACCCCGCTCGCTCCCAGGCGCTGGA 775 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =================================== ================== 19 29 99.3 32 GTAGTCCCCACGCCCGTGGGGATGGACCG # Left flank : GGATCCTACCCGCCCGGGGGGCCTTTGGGACCTCGAGGGCGAGGTGGAAGGCGGAGTGGCCTATGGTGGTGATGATCCTGGAGAAGGTTCCGAGGAGCCTTAGGGGGGACCTCACCCGCTTCTTCGTGGAGGTGGACACTGGCGTTTTCGTGGGCCAGGTGAGCGCTTTGGTCCGGGAGCTGCTTTGGGAGAAGGCTCTGGAGAAGGCGGGCGAGGGACGGGTGGCTATGGCCTACAGGGCGAACAACGAGCAGGGCTTCGCCCTCAGGCTTCACGGCTACACGGACCGGTTTTTGCGGGACTTTGATGGTATACTCTTAGTGAGCACTCGGAACGCCGAGGCAATGCGAAAAGCAGAGAAGTTGTCCAAGTTATTTGCGAGGTACGAGAAACGCCGTGCCAAAGCTTCCGAGGGGGATCTTGAAAAGGAAAATCCGTAGCCACTCCCAACTAGACACATAACGGGGGGTGAGCGGGCGTTTTTGCTGTCCTGGTCAAGT # Right flank : GGCAGGAGGTAGAACCAAATGGGTGACGACTCCCCGGACTAAAGTCCAGGGCTTCTCGGGCATGGTATTGCTACCCCCGAAGGCCCCGTCCAGGCCCTTGCCAGGATGTTTTGGGCAGCGGCCACATCCCGGTGGAGAAGCGCCCCACACTGGGGACAGGTGTACGCCCGCACCCAGAGAGGCTTCTTCTCCCTATGGCCGCACACCGGGCAGTCCTGGCTGGTGTACTTGGGGTCTACCTTGATGACTCGCCTACCAGCTTCTTCCGCTTTGTAGGCGAGGATTGCGAGAAACTGGGCCCAGCCCGCGTCGTGTATGCCTTTGGCAACGTAGGAGCGGGAGAGAGCAAGGATGTTCAGGTCTTCGTGGACGATGGTTCCATAGGCATTGACCAGCCTCCGGGCCAGCTTGTGGTGGAAGTCCCTGCGCTGGTTGGCGATCTTGCGGTGGAGCTTGGCTACCTTGAGCCTGGCCTTCTTCCTGCGGTTGCTTCCCTTCTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCCCGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5516-4632 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEMH01000360.1 Thermus scotoductus strain 16_S16 NODE_56_length_11931_cov_30.2517_ID_111, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5515 29 100.0 32 ............................. GAGCTCGGGCTGAACCCCAAGCTCCCGGAAGC 5454 29 100.0 32 ............................. TCGTCCATGTAACGGATGTAGTAGCGCTCCCG 5393 29 96.6 33 ............................A GCAGGGGGTGGCGACCGAGGAGGCGCGTGAGGC 5331 29 100.0 32 ............................. CGCCCCGGCGATGGCCTGTAGGGACTCCATCA 5270 29 100.0 32 ............................. CCACGGGCCTGGACGTGCCCCTGGTCTACCGC 5209 29 100.0 32 ............................. GAGGTCCCGAACGCCCGGACCAACAGGGTGTT 5148 29 100.0 32 ............................. TGGCTGGAGGAGTACGGCCCGCAACTCCAAGC 5087 29 100.0 32 ............................. CCATCACCGGAGGAACAACCTGGAGGGATGCC 5026 29 100.0 32 ............................. GCAATGGGGACGAGGAGTTCCCCCCGGAGGAC 4965 29 100.0 32 ............................. GCGTCAACAATCGGACCGCCGGACTGTTGAGC 4904 29 96.6 32 ...........A................. GCCCTGCGGGAAGCGGGCTTTCCCGTGGAGAG 4843 29 100.0 32 ............................. TAGCGGCCCGAAACCTCCACATAGGCGTGTAC 4782 29 100.0 32 ............................. GCGGCCAAGCGCACCGCCCTCTGCAGGGCCTC 4721 29 96.6 32 ............................C CCCTGGATCGCACCAGCAATGTTCTCCACATC 4660 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 15 29 99.3 32 GTAGTCCCCACGCACGTGGGGATGGCCCG # Left flank : TGCCCACCAAGGAACAGGTCCTCGAGGCCCTAAAGGTGGTCTACGACCCGGAAATCCCCGTGAACATCGTGGACCTGGGCTTGGTCTACGACGTGGAGATCCACGAGAACGGGGTGGTGGACGTCACCATGACCCTCACCGCCATCGGTTGCCCCGCCCAGGACATGGTGAAGGCAGATGCGGAAATGGCGGTGATGCGCCTTCCCGGGGTGCAGGGGGTGAATGTGGAGTTCGTTTGGACGCCTCCCTGGACCCCTGCTAGAATGACCGAGGAAGGCAAGCGCATGATGCGCATGTTCGGGTTCAATGTGTAGGGGGCTCAGCTGGGTGGTATAGTGGGCCTCGAGGTGCGAGGGAGCCAGGCGCGTACAGAAGGCTTTTAGGCTCCGGATGTGCGCCTGGGCTCACGCACGGGGGATCTTGAAAGGCTAATCTGGACTGGCTCCCTTTACATACACATAGAGGGGGGTCGGCGGGGGTTTTTGCCGTCTGGGTCATGT # Right flank : CCTATCCATACATCCTCAGCGTAGCCCCTTGCCTGTTTTCCGTCGGACGGAAAGCCCTACCTCACCTTTCCCCTTGTTTCGGGGATGGATCCAGAGGGGTGCGGGGGTTTCTACCGCCTTGCCCGGTTTACGGGGCTCCCTCTTCGGATCTGGCACTGGCTGGGCCTGAGCGCACCACCAGGGTGTCGGCGATGAGGTCATGCCAGGCCTGGCGCTTAGGGTGGAAGAAAGCCCAGAGGTAGCCAAGGAGGAGGGGCAGGGTGGAAAGGGTCTTGCCTACCACCTCCCGTATAAAGGCGGTGAGCCAGTCCACAGGCTGGCCGTCCGTGCGGACCACCTTGAGGCCCAGGGCCATTTTTCCCGGGGTTGCCCCATACAATGCGGTGAAGATCACGTAGTAGGCCCAGCTGGGTATCCAGTTGAAGAGGAGGTCCTGGACGAAGGTGGTGGTTTGCGCCAGGGGGTTTATCCCGGCCAGGGCCATCAGGAGGAAGCTCAGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCACGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //