Array 1 210711-210156 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLP01000012.1 Haloferax denitrificans ATCC 35960 contig_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 210710 30 100.0 37 .............................. CACGTCAAAAGATGGTGACAGCGGTGACCCTCTGAAC 210643 30 100.0 33 .............................. AACCGCTCGTCTGGGAAGACGACCTCCCGGAGC 210580 30 100.0 36 .............................. CGTTGAGAGTTCGGTCGCTCCCCGCCCCGTGCGAGC 210514 30 100.0 37 .............................. GGACGCGGCACGCGAGATGCGTGACGAGCTTCGCGAT 210447 30 100.0 34 .............................. TGTCCGGCTTTGTATCCAAACAGGGACATGGCCC 210383 30 100.0 36 .............................. CGCGCATAGAAATCGACCGCGAGAAGCTTTGAACCA 210317 30 100.0 37 .............................. TCGGAGTGGTCGCCGTTGCCGATGAGCCGCGTGGTGC 210250 30 100.0 35 .............................. GCCCCTCCATACGCTTAGAGGTATCGCCACCGACT 210185 30 96.7 0 ..................A........... | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 99.6 36 GTTTCAGACGAACCCTTGTGGGATTGAAGC # Left flank : CCCGTCGGAGGGAGCGGCGGTCAGCCAGT # Right flank : TGCACCGCGCTGGTGAACCCACCAGGGCCAGCCTTCGTCGACGGAGTGGAAACGGTGGAGGTCGACGGTGTGTCTGTTTGCCTCGAGGTGATTGGTGCGAAAGGTGGTTTCGGAGAACAGACCGTCGAGGTTTCGGTGATAAACTGGGCGTAGAAATCGATAAAGAGGTCACCGAACCTGGGACTTAGAGATGGCAGTGGCTGCGTAGTAGCTGCCGAAGAATACGTAGTAACTGGGGACAGCGCTACTCGCGCTCTCTAGCTACTGCCTACTCTCGCCCACGAAAGCGTCTGTAGGCAGTCAACACACTATTGAATGGTCCGCGCTGAGGCGAGTTCGACATCTGCGTCCCCCAGTCAGACCCCTTGTGCGACTCGTCTAGTTCACGGTCACTCGAGGCCATCTTCACACCCGACAATATGACATGGGGGGTTTTGAATACTTCGTTTTGTATGACATGTATAACTTACAGAAACATGGATGGGTGTTACGATGACTCT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [33.3-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 366818-366979 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLP01000011.1 Haloferax denitrificans ATCC 35960 contig_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 366818 30 100.0 37 .............................. GACGACCGGGGCGAACTCGCGCGGCAGGCGCAGCAGG 366885 30 100.0 35 .............................. GCTCAGGAGTTCGAGCGTGGGGTCGCGATGGTCGA 366950 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 3 30 100.0 36 GTTTCAGACGAACCCTTGTGGGATTGAAGC # Left flank : AACTTCGAGGCGCTCCGCGCCGGCGAGCGCTCGTTCGAAGAAATCGCCGCGCCGACGATGACGCTCGCCGCCGACACGAACGTCAGCGACGCGTTCGACCAGTTCCAAGCCGAGGACCAGGAACTCGCGCTCGTCCTGCGGGACGGCGAGGTCGTCGGCCTCCTCACCGCGACCGACGCCCTCGAAGCGGTCATGGGCGAACTCGACGACCCGCTCGACTAACGCGGCGGTCGCGGCTCCGGCCCCGTTTTCCGGCGTTTTCGAGGCGCGAGCCGCGGGTCACGCCGACGGAGGTCGCCGAATCGAGCGTGAGCGTCGTGACTCACGAGTGGGTCGGGGCGTGTGACACATCGGCGGCTGACCGGGGAGTCGGTCTTAACAGACCCAGTACTGACTCGTTTCCGTCGACCCCCCCGGGGGGTACGGGGGAATTGAGGGTCGACGGAAACACTCTTTTGAATTCGGGCTGTACAGCGTTCTGTACCCGTGAACTCGGGACG # Right flank : GTCGAGGACTGGCGGCGCGACCGCGACCGACGACGGTTTCAGACGAACCCTTG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 480-55 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLP01000016.1 Haloferax denitrificans ATCC 35960 contig_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 479 30 96.7 36 ......................G....... ATTGGTGCTGGCGTTGGTTCTGTCGGCGCGGCTGGG 413 30 96.7 35 ......................G....... ACGTACTGGACCGACTCCGCGAGGAGAAGGCCATC 348 30 96.7 36 ......................G....... GCGAGCCGCTACTACGCGGATGGCGATGCCGAGCTT 282 30 100.0 36 .............................. GCGTGGAACGGTCTCAGTTGGCTTAAGACCGTCATC 216 30 100.0 35 .............................. ACGTACAGCGACCCTGATACCGTCGTCACCTGCCG 151 30 100.0 37 .............................. ATCGCGACTCAGACCGCCGTCAGTAGCCCGCTACGGA 84 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 98.6 36 GTTTCAGACGAACCCTTGTGGGATTGAAGC # Left flank : GGCACCTCCGTCGACCGCATCCGCGAGCGCATCATCGGCGACGTCCACACCTACGGCGGCCGCTCCACCATCGGCGACTGGTACCGGACGAACCGCGCGCTCCGCGAACGGGTCGACGACCTGCTCGACTCGGCGTGCGAGCGCCCGTACTTCGACGCCGACGAGATTCGCCGCCTCCAGCGCGAAGAGCTCACGGGCGAAGCCGAACACATGAGCGCCATCTCCGGCATCATCACCGGCGAACTCTGGGTCCGCAAATACATCGACCGCGAAGACCGCGACGTCGGGGAGGGTGCCGTGAGTGCGACGGAAGCCGAAGACGCGCCGCAACCGGCCGACTGAGGTCGGGCGAGCCCTCACTGTGAGGGTTCCAGTTGTTTGTCGCGTGGGATGTGGTCTGTTTCCGTCGACCCCCCGGGCAACGCGGACTATTGAGGGTCGACGGAAACGTTCTTTTGAATTCAGCTCGTACGCGACGTTACGCCCGTGGTTTCGGGACG # Right flank : CGGATGAAGCGGATTTGAACCACGGCGACGCGCCTCGTTTCAGACGAACCCTTGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGATTGAAGC # Alternate repeat : GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 1-494 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLP01000004.1 Haloferax denitrificans ATCC 35960 contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1 29 96.7 34 -............................. GCTCGTCGACGTCGTCGACGACGACGCTCGGAAC 64 29 96.7 37 ......................-....... CGTCGGTAGCGGAGCCGGGTGGTCTTCGGGGGTGACA 130 30 100.0 37 .............................. ATTTGGAACCTCTCGACGGGCGCGCGTCGAGGCCCGC 197 30 100.0 36 .............................. TGTCCGCGCCGTCAGCATCGCCCGAGGCCGCTACGT 263 30 100.0 37 .............................. ACGGGGTCGCCCCCGCCCGGCATCCCGGACTCGGAGT 330 30 100.0 37 .............................. ACGGGGTCGCCCCCGCCCGGCATCCCGGACTCGGAGT 397 30 100.0 38 .............................. CCCTCAACGGAGGTATGCGCGGTGTCGGTCTCGTCCGC 465 30 90.0 0 .................TC...A....... | ========== ====== ====== ====== ============================== ====================================== ================== 8 30 97.9 37 GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Left flank : | # Right flank : CGTCAGCTGAGCTACCGTCCGCTTGAACCGAGCGCGACTCAGACAATCGGGGCGGTCGACGGTCAGCGGCGAAAAACCACGCGAAAGAAACAGACCTCGACGCTACGCCGCCTCGGCGTACATCGCCACCAGCTCGTCCGCGTTCGACTGCCACGAGTAGCGCTCTTCGATGGCCGCTCGGTTCGTCCGACCCATGCGGACGGCTTCCTCGGGATTGGAGACGAGTCGGGCGAGCGCCCGCGCCAGTTCCTCGGCGTCGCCGGGTGTGACGAGAATCCCGCGGTCGTCGGTGATGACCTCGGGGATACTGCCGACGGGCGTGGTCACGATGGCGTTGCCGCCGGCCATGCCTTCGAGCATGGCGATGGGAAGCCCCTCCGCGTAGGTCGGGAGGACGAACACGGTGCCGCGGCTGATGAGGTCGCGCTTGTCTTCCTCGGAGAGGAAGCCGAGGTACGAGACGTTGTCGTGGGCGGCGGCGACCGCCTCGGCGCGGTCGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.10,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 38-265 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLP01000020.1 Haloferax denitrificans ATCC 35960 contig_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 38 30 100.0 37 .............................. GACGTCACGCCGACCCACGACATCCCCGCGGACAACG 105 30 100.0 37 .............................. CCTCGGCGATGTGCTTCGAAGCGAGTTCGACGTGAGT 172 30 100.0 34 .............................. AAAAACGAGGGCGTGCAGGCCATCGACGGCGCAC 236 30 96.7 0 ........................A..... | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 99.2 36 GTTTCAGACGAACCCTTGTGGGATTGAAGC # Left flank : TCCCGGGCTTCGGCCGGCTCTGCGACGACTGCGACGAG # Right flank : CGACAACCGCCCGGACAACCTCGAACTCCGCGAGTCGTTTCAGACGAACTTCAGTGAGTCGCGACCCGTCAAACTACGGGCATAATTTTATGTCGAGAAGCGAACAACCACAGAGACAGCAATGAGTGCAGAAGGAGGTGTCGGGTAACGGTGCGGATCATGGCTCACTTGTCAGCGCGTTCCGACGCCGCGTATCAGAACGATTACCATCACAAGATTCGCGGACGAATATGGAACGCTCTCGACGGGACCCCCTACGGGGAGCGACACGACTCCGGCGAGCCGCCGGGGTTCGCCTACTCGAATCCGTTTCCGCCCCGAGATATGCGGGAAGGTGACGACCGGAAGTTACTGGTCGCGTCGCCCGACGAAGAACTGCTCGCGAACGTGGCGGCGAATCTGCTCGATGACCGAGAGTTCAACGTCGGTGAGATGCCGTTTCACGTCGACGAGGTAACGTCACTCGAACCCGACGTGGGCGAACCCGGGACCAGAGGGAC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.20,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [16.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 9808-10032 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLP01000020.1 Haloferax denitrificans ATCC 35960 contig_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================== ================== 9808 30 100.0 35 .............................. GCGGTGACGCCCGAACTCGTTGAGGAGAGAGACGT 9873 30 100.0 35 .............................. AACGAAAACCTCGCCGAACTCGACGGCGACGTGCG 9938 30 100.0 35 .............................. CTCCGCAAGCACATCTGAGATGAGTTCGCGAACGC 10003 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =================================== ================== 4 30 100.0 35 GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Left flank : CGCTCGAACGAACCGTCGAGCATCCGAAACTCAACCGCAAAGTGAGTTATCAGTACCTGATGCGGCTCGAAGCGTACAAACTGAAAAAGCATCTGCTGACCGGAGAGGAGTACGAGCCCTTCGAACGGTGGTGGTAAGATGTACGTCGTGATGGTGTACGACCTCGAAGCCGAACGGACGTATAAAGCGCTCAAACTTGGGCGACGCTATCTGACGCACGTTCAAAACTCCGTACTCGAAGGCGAGATTTCCGAAGGTGACCTAGCGACGCTTCGGAACGAGGTCGAAGACCTGTTGAAGTCGGGCGAATCGGTAATCATCTACGAACTCTCCTCGGACGCGCTACTCAACCGCTCGGTGTACGGCAACGATCCGACCGACGAGAAGCGCTTCCTCTGAGTGTCCGTCGACCCCCCGGTCAGCGCGGGTTACTGGAGGTCGACGGAAATTCTTTATTCGAGTCGCTCTTCAGGGAGCCTGTGTCCGTAGTATTGGGCATG # Right flank : GTCATGCGTTCATTGAACCTCGTTCGATAACTCTCGTTTCAGACG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.10,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //