Array 1 97779-93973 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAHAN010000004.1 Klebsiella pneumoniae strain 22KXXI NODE_4_length_346956_cov_36.764696, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 97778 29 100.0 30 ............................. CTCACGCTGATACCTCGGAAAAAGACGGGC 97719 29 96.6 32 .G........................... GCGGGCTGGGTTTTGTCGACTCTGCCGATCCG 97658 29 100.0 32 ............................. TAATATTGATAAATTCGATGAAGTAACCGGAA 97597 29 96.6 32 ............................A TCGAAGTACCAGCGCCGCACCGTGTTTTTTGC 97536 29 100.0 32 ............................. GTGGCCGGTGCTGCCAGTACGGTTACCGAAGT 97475 29 100.0 32 ............................. CATCCACGCTTCTGGCCACCAGGCAGATAATC 97414 29 100.0 32 ............................. GTGCTCCTCTTCCAGATACTGGGCCAGGAGCT 97353 29 100.0 32 ............................. TACAGGACGACAGCATCCTGGAACATTTCGAC 97292 29 100.0 32 ............................. CTCTGCGTGTGCGCCTCCGCTACGAGGTGACG 97231 29 100.0 32 ............................. TGAATATTCATTTACTAAATTAGAGACAATTC 97170 29 100.0 32 ............................. CGGATTAAACGTAAGGCCGCGCGCTGGCGTAA 97109 29 100.0 32 ............................. GTGGTTTGTTACCGTGTTGTGTGGCAAAAAGC 97048 29 96.6 32 A............................ GAACGGAGGAATATAAGAACAAAAGCCCGCAG 96987 29 100.0 32 ............................. TAAACCGCTGGCGTGGTCAGTTGCGTGGCGGT 96926 29 100.0 32 ............................. GGCGCCGGCCTGATCACTATCGGGTAACGGTG 96865 29 100.0 32 ............................. GGCCTGAACCAGAGCATGATCTACACCTGGAA 96804 29 100.0 32 ............................. ATTGGGTAGAGCAGGCGAACGGATGTCTTTTT 96743 29 100.0 32 ............................. TTTTCACGGTCGAAGTTGTGCATGCTTTCTGC 96682 29 100.0 32 ............................. TCGACGCCCCGGTGTGGGAAGACTTTGGCACC 96621 29 100.0 32 ............................. CAGCGCATACGGGTTAAACCGGATCACCTCTT 96560 29 100.0 32 ............................. ACATAGCGCCCGATACGCAGCGCCAGCGGGTA 96499 29 100.0 32 ............................. GATCGATCGTTATTGTTGAACCGCACTATGGT 96438 29 100.0 32 ............................. CTTTTAATAATATCATCGGCAATGTCCTTATC 96377 29 100.0 32 ............................. CGGGACCGGATCCGCGTGGGCGACCAGGATTA 96316 29 100.0 32 ............................. CACCGATATTCAGTGCGCCAACGCCATAGCAA 96255 29 100.0 32 ............................. CCGAGGTTTTTCATACCTTCGGCAGTCGTAGA 96194 29 100.0 32 ............................. CCTGAATCTTCACTTCGTCGATCATTCTGCGC 96133 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 96072 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 96011 29 100.0 32 ............................. GTAACGCAGACGGCGAACGTCGGATCCATTGG 95950 29 100.0 32 ............................. GACCAGAAAGCCTGGGCATTGTTCCGCTCATT 95889 29 100.0 32 ............................. CCCCCGGCCGCGTGGCCGATTGCCATTACCGC 95828 29 100.0 32 ............................. TATACAGTATTATCATAGCGAATTCCCATCGG 95767 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 95706 29 100.0 32 ............................. GCACCAACGTTTACGGTGCGGTGGTGAAACAA 95645 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 95584 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 95523 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 95462 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 95401 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 95340 29 100.0 32 ............................. TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 95279 29 96.6 32 ........T.................... ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 95218 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 95157 29 100.0 32 ............................. CTGCAGGTAAATGACTGGATGGGGGAAGAGGT 95096 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 95035 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 94974 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 94913 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 94852 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 94791 29 100.0 32 ............................. TCCCCTACCACCCACTGAGCAAACTGGTAGCA 94730 29 100.0 32 ............................. CAGATACCAACGGTTACTACGGCAATCAGCAC 94669 29 100.0 32 ............................. AAGGTTGACCTGTTGTCGGCAACCATCGAGCC 94608 29 96.6 32 .........A................... GAGGCGCGCGTTGTCGTCGGTGAGATGCGCGA 94547 29 96.6 32 .....A....................... GCCATTCGTGCTTCTTCGCTTTGCTGCATCCA 94486 29 100.0 32 ............................. GAATATAAAACCAGATTCCATATAGCCCTGTG 94425 29 100.0 32 ............................. CCGGTTACGGGGATGACTGCAATTCGCTCCTG 94364 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 94303 29 100.0 32 ............................. GCGGCGTCAGGTGTGTGGCAGAAAATTATTGC 94242 29 100.0 32 ............................. TCGTCTGAGTTCCGGCTTACGCCGTGCCGACA 94181 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 94120 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 94059 29 96.6 29 ............T................ GGGTTCACTTGGGTGAAACTGAACTAACT 94001 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 63 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGGTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTA # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGATTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 45-195 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAHAN010001065.1 Klebsiella pneumoniae strain 22KXXI NODE_1066_length_235_cov_0.924051, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 45 29 100.0 32 ............................. AACGACGCACAGGATATAATGCTTGGCCTGGG 106 29 100.0 32 ............................. TGACCGCCGATACGTTTGCTGGCGCGGCAGAA 167 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGGGATAAACCGTGCGTGTCGGGCTGATTCGTCAGCTTCTTGGTG # Right flank : GTTACCGCGACTCATGCGACGATAAAAAATACGTGTTCCC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [31.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //