Array 1 3561375-3562197 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEKDR010000004.1 Streptomyces sp. RB110-2 tig00000001_np1212, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 3561375 30 100.0 31 .............................. GGTTCATGGACAGGGGCGCGGGGTGCTTGAT 3561436 30 96.7 31 .............................T CCCCCGAAGCTGTGGCGTGGCTCAACACCCG 3561497 30 96.7 31 .............................C GCCGCTGCGCCCACCCGGGCCTCGCAGCCAA 3561558 30 96.7 31 .............................A CCCGGCGCGCGGCCGACCGCCGCAAGGCCGA 3561619 30 96.7 31 .............................C GCGCTCGCATTGCGTCGATGAGCTTTCCCAT 3561680 30 96.7 31 .............................T CGACGGCGGCCTCGGCGCGGCCACGGTCGAC 3561741 30 96.7 32 .............................C CGGTCACCGTCATCCGCTCCACCGGGGAGTCG 3561803 30 96.7 31 .C............................ CGAACGCGATCACCGTCCCGCCCTCCGAGCG 3561864 30 100.0 31 .............................. CCGAGGGCGTGGCCACCGCGGCCATCACCCC 3561925 30 100.0 31 .............................. CCGAGGGCGTGGCCACCGCGGCCATCACCCC 3561986 30 100.0 31 .............................. CGTACGCCTGGCTCCAGCTGGAGGGCTACGT 3562047 28 86.7 31 ........--..............A....A TCCCAACTGCCGTCACAGCGTAAGCAGTTAC 3562106 30 90.0 32 ...........A.............C...T CGCGGCGGATGACCTGGCCCTCGGGATCGAGG 3562168 30 80.0 0 ...................T...A.CAG.A | ========== ====== ====== ====== ============================== ================================ ================== 14 30 95.3 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : AGCGCCTCCAACCGGGAGGTGTACTACCCGAACTGGGCAACCGCCGGACCGGGCGAGCACGTGGCCGACGTCGCCATCCCCTTCCGCACCGGCTCGATGCCCGACCTCTGAAAACCAACCGAAGCCGGGCGACATACACCGCAGGTTGCAACCACCGACCTGCGCAAGCACCTCGGGAGACCGCCATACCGGCCCCGAAGGAATAGCCGCGCCCCAAGCGCACACCATCAGCCTCCGCCACCCCCTCAACCCGTCGAACCCCAACCACGAAGCCCCTCCCGAAACGGGGTAGGCACACCGCACACCGGGGCCCAAAGCCCACGAAGGACAGAGCCGCACCTCTTCCATCGAAGCCGGGCCGATGAGACCGGGTGGCGGGCAGAATGGCATCAGCCGAACCACACCTGTGACCATTTTGCCCTGGAGAGCGAGATATGCCAGTTTCTCAACAAGTTAGCAAAAACCGCCTCCCCGCCACCTAAACCCGCAGGTCATGAACA # Right flank : ACGAATGGTCGCGCGGCCCGCACCGTAGCCCGGACAAGAAACAGCCCTACAGGTCACGACGTTAGGTCGTCTCCCTCAACGTCGCTTCCCCATGCGCGTTGGGCGTTGTGTCGGATGTGTGCGTGGTGGGCGTCGCGGAGGGGGTCGGTGATGTGGAAGCTGTGGCTGCCGGGGTGGCCCTCGTACAGTCCGCACCACTGCCGGTAGTTCTCGCGGAGATGGTGGATGCGGTAAGGGCACAGGGCGAGGAGGACGAGCCGATGGTGGACACGGTGGCCGCCCGCACTCGTCGCCCACAGGAACCACAGGCTCACGGGCGGTTCCGTCTCCGCGGTCCACAGGCGGGCGGCGTGCTCGGTCGTCTCGCCGTGCTCACCCAACTCGCACAACACATACGGCTTGTCGTCCAGGAGGTCTTCGGCGTCGTCCGGGCCGTCGTCCATGGAAAGCAGGGCAGGGAGTGCTTCGCCGGGCGGGAGATTGGTGATGGCGGTGCATTG # Questionable array : NO Score: 5.46 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3565693-3566696 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEKDR010000004.1 Streptomyces sp. RB110-2 tig00000001_np1212, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 3565693 30 93.3 31 ............................GG AGCGGCGCGGCGGACCGATGCGGCGTGGCCG 3565754 30 96.7 31 .............................G CCCTTGGACGCCGCTGGGTGGACTACGGCGA 3565815 30 100.0 31 .............................. GCTCACCACCGTGGCCGGGTTCCAGCTCACC 3565876 30 100.0 31 .............................. GCTCACCACCGTGGCCGGGTTCCAGCTCACC 3565937 30 96.7 31 .............................C CGACGAGGACGGCTACCGCGACGACGCCACC 3565998 30 93.3 32 ............................AC CCGCCGCTCGCTCGGCCGCGATGTACTGCGGG 3566060 30 96.7 31 .............................C CGGACAATCCGAATCACTGGGCGCGCAAGGA 3566121 30 100.0 31 .............................. AGTGCAGGAAAGCCCCGCCGGACCAAAAGGC 3566182 30 100.0 31 .............................. TGGTGCCGATCGCCGCCGTCACCGCAGCCAG 3566243 30 96.7 31 .............................G TCGGCCCGCTCGACACGGCCCACATCGACCG 3566304 30 96.7 31 .............................C GTCCGCGCCGCCTACAAGACCGGCGGCAGCA 3566365 30 93.3 31 .........C...................G AGATCGGGCGGGAAGCGCCGCCGGATGTCGA 3566426 30 96.7 31 .............................C GGGGGCGGGTCTTGGACGCCGGATTCCCCGC 3566487 30 96.7 31 .............................G GGGCCTGCGCGCTCCCGTTGCCGCTCACGTT 3566548 30 93.3 30 ............................GG CAGCATCACGGATGTGGCGACCCGCCCGTG 3566608 28 93.3 31 ............--................ GGTCCTGCCAGTCGGTGAGGAGCCGGACTTG 3566667 30 73.3 0 .....................TCAACAG.G | ========== ====== ====== ====== ============================== ================================ ================== 17 30 95.1 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCA # Left flank : CTACGGGGCGCCCGCAGTTGAAGGCAGGGAGTGGTGGCGCGAGAGCCTGGATACGCCGCCGGAAAGGTCTCGGACCTTCTCCTACTCCGAACTGGCCGTCCACCCCGAGAAGCGGAAGCAGGGGCTGGCGGATGCCCTCTCACGGGCTCTCCTGGCCGGGCGGACCGAAGATCTCGCAGTCCTCCTGGTGGACGTCAAGCACCCCCGCGTGCAGTCCCTGTACGAGGGCTGGGGCTTCCGGAAGGTCGGACAGCGCCAGCCCTTCCCGGACTCTCCGGTCTACGCCGTGATGCTGGCCGACCTCCCGCTTGACGAGAGCCACGGAAGGTAGAGCCGCACCTCTTCCATCGAAACCGGGCCGATGAGACCGGATGGTGAGCAGAATGGCATCAGCCGAACCACACCTGTGGCTACTTTGCCCCGGAGAGCGAGATATACCGGTTTCTCAACAAGTTAGCAAAAACCGCCTCCCCGCCACCTAAACCCGCAGGTCACGAACA # Right flank : GCGAATGGTCGCGCGGCTCGCACCGATGCCTGGACGAGGAACAGCCCAACCGGTCAGTACGTTTGGTCGTCTCCATCGACATCGTCATCCCTTGCGCGTTGGGCGTTGTGTCGGATGTGTGCGTGGTGGGCGTCGCGGAGGGGGTCGGTGATGTGGAAGCTGTGGCTGCCGGGGTGGCCCTCGTACAGTCCGCACCACTGCCGGTAGTTCTCGCGGAGGTGGTGGATGCGGTAAGGGCACAGGGCGAGGAGGACGAGCCGGTGGTGGACACGGTGGCCCCCTGTGCTCGTCGTCCACAGGAACCACAGGCTCGCGGGCGGTTCCGTCTCGGCGGTCCACAGCCGCGCCGCGTGCTCGGTGGCCTCGTCATGCTCGCCCAACTCGCACAGCACATACGGCTTGTCGGCCAAGAGGTCTTCCGCATCGTCGGGGCCGTCGTCCATGGAAAGCAGGGCGGGGAATGCTTCGTCGTGCGGAAGACTGGTGATGGCGGTGCATTG # Questionable array : NO Score: 5.36 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.35, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3574791-3575431 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEKDR010000004.1 Streptomyces sp. RB110-2 tig00000001_np1212, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 3574791 30 96.7 31 .............................T GACCCGGCCACGGTGGACATGACGGCCCCGG 3574852 30 96.7 31 .............................C CGCCGATGGGTGCAGCAACTCGAAAGCGGTG 3574913 30 100.0 31 .............................. GGCGGGCGCCGGCATCGAGGGCAAGGTCGAC 3574974 30 96.7 32 .............................T CGAAGGTGCGGCACATCGAGGCGGGTCTCGGT 3575036 30 96.7 31 .............................A GCCCAGAGCGGCAGCCAATTGAGCTTGCGTC 3575097 30 100.0 31 .............................. TCAATCGTCCGAGCTGTTCCATCAAGGTTCA 3575158 30 96.7 31 .............................C AGCACGCCCTGGCGGTGGCCCGGCAGCTCCT 3575219 30 96.7 31 .............................T TCGAGTGGCCGGTGTTCACGTGCCCGACCGG 3575280 30 100.0 31 .............................. GGTGCCGCGTGAGACACAAGGTGTGCGCACT 3575341 30 100.0 31 .............................. CCTCGGTCGCGTTCTTCGCCAGCCCGGTCTT 3575402 30 93.3 0 ..........................T..T | ========== ====== ====== ====== ============================== ================================ ================== 11 30 97.6 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : GACAAGATCCCGCCCTGCCTCCCCACAACGGCAGGAGTCGACTCGCCGGGAGCCAAGGAACCCGCCCACGAAACCCTCGTCGAGTGCACCAACTGCCGCCGCCCAGGCCCACCGGAAGCCCTTCCTGACGGCCTCTGCCGCCCCTGTCACCGCGCCCACACCACGGGCGGCAACGACACTGCCGCACCCACCCCGGACGAGGTCGCCGCCGTCAAAGCCCACATCGCCAACCTCCGCAACCTCCTCAAGCCCGTCTGACTCCCCAACCGCCGCACCCCTCGTAGGGCAGGTCGGGCACACCGCACCCCGGGGCCCACACCTACGAAAGACAGAGCCGTACCTCTTGCACCGAAGCCGGGCCGCCCAGTCTGGCGGCGGCCAGAATGGCATCAGCCGAACCACACGCATGACCCCTTTGTGGGGAAAGGCAAGATATGCCGGTTTCTCAACAACACCGTAAAAGCCGCCTTCCCACCACCTAAACCCCCAGGTCACGAAGG # Right flank : TTGTCTTCAAATCGAGGAGCCCGCGAACCGACCAACGCAGTCGGGGCAGTGCGTGCAGTCGCCCTACCTGCTTCGATAAGGAAATCTACGTACGCCGCAACGAAGTTGAACCGACGGTCAACGACCTCAACTGGCTCCGCTCGGTGGCCACGCGATACGACTAGCGCGCCCACGTCTTAGAAGGAACCTCGCCCGCCGCAACGATCTGGCTCGGACTTCGGGGATAGATCCATTGTCGCGCTCCGCGAAGGCGCTTGTCACCGTTCTCCGGAATGACCTTTACGCCCGTTATGCACCCGTAGGGTTACGGGGATCGAGCACGCCATACCAACCTGATGTGGAGTCGAGAGTGGTACATGACGTTGCCGCACTGGCGAAGGAACTCACCGCCATGGCTGCGGCCGATCAACAGTCCTCAGCCCGCGCCAACAGCGATGATCCCGCCGAGCAGTTGGTATGGCGTCGGCTTACCGCGCAGCACGGTGACCGGCTCGGTCAGA # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 3605402-3607627 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEKDR010000004.1 Streptomyces sp. RB110-2 tig00000001_np1212, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 3605402 30 93.3 31 ............................TC ACCGAGTACGCCGCCCGCACCCTCACCCGTG 3605463 30 96.7 31 .............................T CGACGCTGACGTCGTCGAGGTCGGCGGACAC 3605524 30 96.7 31 .............................C ACACGACCGCGTGAATGTGCGTGTGCCAGGC 3605585 30 96.7 31 .............................A CCAATCAGCAGGATGGTATTGCCATCGCAAG 3605646 30 93.3 31 ............................TC GCGCTCCCGATCGACAGTGCCTTGTCGAGAT 3605707 30 96.7 31 .............................A TCGGGCACAGTGCGCTCAAGGGCGACTGGGT 3605768 30 93.3 31 ...T.........................T CGGTGCCCCCGGCCGGCGCCGAACAGCCGGA 3605829 30 96.7 31 .............................C CCGTCGTACGGCCCTGACGTGCCGGGCCGTA 3605890 30 96.7 31 .............................T GCGGGATCGGGATACTCTGGTTGGACACGAT 3605951 30 96.7 31 .............................T CGTCGAGCACCTGCCGCAGCGGAACGAGCGG 3606012 30 96.7 31 .................A............ TGCTGAGATCGATCCCGGTCGCCGGGTCCCG 3606073 30 100.0 31 .............................. GGAACGGGAGGGTCGGCGACCGCGACCGGAT 3606134 30 96.7 31 .............................A TGCCGACGGTGTCGGAGTTCTGGATGAGGGC 3606195 30 93.3 31 ..................T..........C GCATGCCTATGCCCTCGGTCCTGCAAGGTGG 3606256 30 96.7 31 .............................A TGTCGTAGGTGACGCCGTCCCGGCTGACGGA 3606317 30 90.0 31 .G.........A.................C CCGGGTAGGCGAGCAGCGATGAGATGACGAG 3606378 30 96.7 31 .............................A CCATCCTGAGTGCGTCCGGTCTGCGGATGCT 3606439 30 96.7 31 .............................C CGCCCTCGCAGTTCGTCACCGGGTCCACCCA 3606500 30 93.3 31 ............................TT CCTCGCCCTCCTCGATCGGGTTCAGGCCCAT 3606561 30 100.0 31 .............................. GGCTGACCGGGTCGGCGATCATCTGCGCGAC 3606622 30 100.0 31 .............................. CCAACGCGGCGAGCACGTACAAGGTGCGCAT 3606683 30 96.7 31 .............................C CGCCGAGCTCACCCCGCAGCGACTCGACGTC 3606744 30 100.0 31 .............................. GCAGGCGGCCCACCAGGCGCAGGCCCGCCTC 3606805 30 100.0 31 .............................. TGATGATCACCGGCATCCCCGGCTCGGGGAA 3606866 30 100.0 31 .............................. ACCTCCCGACCGCGGAGGAGTACGACCCGGT 3606927 30 100.0 31 .............................. TGCCGGTGGCCTTCTTCCTGCCGGTGGGGGC 3606988 30 96.7 31 .............................A CGGACTTGGCCCCGGCTTGCAGCCACTCCAG 3607049 30 93.3 31 ........A....................A TGCCGTCGTCGCCGCTCTGGTCGGCGGCCAG 3607110 30 96.7 31 ............................G. CGTCGAGGCCGTACGCGTCGCGGACCAGGCG 3607171 30 93.3 31 .......................A.....A GGTCTTACAGGGGCCCGTCTGCGGGTCCGTG 3607232 30 96.7 31 .............................C GGTGCCAGGCCGGGGCGGCCAGCCCCGCAAA 3607293 30 100.0 31 .............................. AGCTTGCGCGCGGCGACCTCAAGAAGGGCCG 3607354 30 100.0 31 .............................. GCGTCATGCGCGACGCGATGCCGGTCAGCAA 3607415 30 93.3 31 ............................GT CGACGAGCTCAGGGCCGAGCCATTTCAGGAG 3607476 30 100.0 31 .............................. GTCGTCCGGGCCGACCCTCAGGCCGGCCCGG 3607537 30 96.7 31 .............................A CCGACCGGGGCCGCGCCAGACACCTGCCTCA 3607598 30 93.3 0 .........................C...T | ========== ====== ====== ====== ============================== =============================== ================== 37 30 96.6 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : ACCGACAAAATCCCACCCCACATCCCCAGGGCGACAGAAGGCCGATCACCAGGCTCCAAGGAACCGACCCACGAAGCGCTACTGGTCGAATGCACCAACTGCCGCCGCCCAGGCCCACCACAAGCCCTCCCCGACGGCCTCTGCCGCCCCTGCCACCACGCACACACCCACGGCGGCGACCCCACCACCCCCACCCCGGACGAGATCGCCTCCGTCAAAGCCCACGTCGCCAACCTCCGCAACCTCCTCAAACCCGCCTAACCCCCAGGCGATGGGTCGCTGTTGGGCAGGACGGCCACACCGCACCCCAGGGCCGACTCCACGGAAGGCAGAGCCACGCCCCTTCCACCGAAGCCGGGACAATGAGACCAGTGGTGCGCAGAATGGCATCAGCCGAACCACACACGTGACCACTTTGCGCCAGAAGGTGAGATATGCCGGTTTCTCAACAACATGGCAAAACCCGCCTCCCCGCCGCCTAAACCCCCAGGTCACAAAGG # Right flank : TGCGCCCCCGAGTGAAGTGGCAGGTCACACCCCGCGCGGGTACTCCCCCTTCCCCGTCCCGATGATCCCGCCCGGGTCCCGCAACCACACCTGCTGACCCCGGTCAGTCACCGTCAGCCCGAACTCCTCCACACCAGGGCGACCGGCCGACTCGTACTCCCACCAGGTCTGCTCGATCTCTTCCCACAGCAGCCCGATCCCGTACTGCCACACCTCCTCTCCCGAAGCCGTCGAAGCGCCACCGACCTCACTCGTCACCCACACGCGCACCCCGCCACCGGCGACACTCTGGTGAATCATCCGCACACCGGGCAGTCGCGCCCCCGCGAACAACGCGAACCCGAGGTCCAGCAACCGGGCCGGGTCCAGACCGGCCGCCCGCGCTCGCCCCCTCCCCCGTACCTCATGCAGATCGGGCACGCGGTGCGAGCGCATCGGCATGTACGTGGCCCCGCCGCAGAACGGCCCGACCGCGCTGCCGTCCCCCTGAACCCGTAGCC # Questionable array : NO Score: 5.44 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.35, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 4756252-4755367 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEKDR010000004.1 Streptomyces sp. RB110-2 tig00000001_np1212, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 4756251 30 100.0 31 .............................. TCAGTGGAATGCCGGCCCCCTGGCCATGCTC 4756190 30 100.0 31 .............................. CCGCCGCCGCCATGACGCTCTGGAAGCAGAG 4756129 30 96.7 31 ............................A. GAGCGCGGCCCAGCCGATCGCGGGAACCACG 4756068 30 96.7 31 .............................A GCGCTCGTACGAGGACCGCGAAGGCGTCAAG 4756007 30 100.0 31 .............................. ACCACGCCCCCGTCGCGCTCACCAGCTCGCC 4755946 30 96.7 31 .............................C AGGGGACGCCGGGCGGCAAGAACCGTGGGAA 4755885 30 96.7 31 .............................C GGCGGATCGAGGCAAGTTGTAGCAGCGCTTA 4755824 30 96.7 31 ............................T. ACGCCGGGGACGAGCCCCGAAGCGCCGGGCA 4755763 30 93.3 31 ............................GC TGGTGGCGTCGGCGGTGAAGGCGTTGCCAAA 4755702 30 100.0 31 .............................. CGGTGACCGCCGACAAGATCGCCGCCGACGC 4755641 30 100.0 31 .............................. CCCTACTGCGCCGGCTGTTGCGCCGCATCGT 4755580 30 96.7 31 .............................T TGGTACGCGTCCCACTGCCAGGGGAAGTGTC 4755519 30 100.0 31 .............................. CCGTACGCGCCTTCCAGCGCGCACAGGGGTG 4755458 30 90.0 31 ............AT...........C.... GCGGCAGTGATCGGCGTACCTGTACGACGCT 4755397 30 80.0 0 ...........C.GG......C....TT.. | T [4755379] ========== ====== ====== ====== ============================== =============================== ================== 15 30 96.2 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : GCGTCGGACGCGGGTTGAGCTTCGACCGTGGCGCCGGGAGGACTTCGTCGCCGACCTGGACGATCACTTGATGGACGCCCTCGGGGCCTGACGACGGGCTTCGCTCACTGCTTCCTGGCCACTCCATGGCAGGGAATGACGAGTTCCTTGAGCCGCCGAACCTCCGGTCAGGAGTCACGTGCACACGGGCCCTGGGGGCGAGGGCCGAGTCGGCCGGCTCAAGGCACCGGTAGCGGTCGTCGTGGTCGAAGACCTCACCGACGTCGGCCACAAACGTGTTCGCACAGCGAGCCCAGAACACAACGCCCCTGGCCGACACCTGCGGAGGGCCGGGCCGCTTCACTTCCACCGAAGCCGGGCCGACGAGATCGACGGCGGGCAGAATGACATCAGCCAAGCCATGCACATAAACCCTTTGCGGCAGAAGGTTGGATATGCCGGTTTCTCAAGAAGTGAGTAAAAACCGCCACCCCGCCACCTAAACCCCCAGGTCACGAAGG # Right flank : CGGGTGTTCGCGGTACCGCTTCGGCCGCCCCGTGTCCCGTAGACGCCCAGGGGCACTCGGCGCGACACCGGGCCGCCCTCCCAGTGCCCTACGGAGAGGCTCCCCGACCACTCAGCCCAGCCCCTCCTCCACCAGGGTCGCCCACTGCGCCACCACCCGGGCCCGGCGGGCCGTGTCGTCGGTGAGGAGGTTGGCGAGGCCCAGGCCGCGGGCCATGTCCAGGAGGCCCTGGACCGTTTCGCGGGCGCCGGGGCGGGACTCGTCCGCGTCCAGGAGTTCGACCGCGATGCGGTGGGTCTCGCGGCCCACCCGCGCTTCCAGTTCCGTGACGCGCGGGCGGAGCTGGGGCTCGTTGGAGGCGGCCACCCAGAGGTGGAGCGCGGCCCGGAAGAGGGGGCCGGTGTAGAGGTCGACCAGGGCCGCGACCACCTCCGCGCGGCCCTGGACGGGGAGCGCGCGCAGGGCCGCCGAGCGTTCCTCCGCAACGTACTCCACCGCCC # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.63, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 4761332-4759537 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEKDR010000004.1 Streptomyces sp. RB110-2 tig00000001_np1212, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 4761331 30 96.7 31 .............................C AGATCTTCCCGCAGCGGACGAGACCGATCGT 4761270 30 100.0 31 .............................. TCGTCGACGAGGGCCGACCGGCCGGACTCCA 4761209 30 100.0 31 .............................. TCGTCAACTACGGCACCCGCGGCCTGATCCA 4761148 30 96.7 31 .............................T GAGCCAGCTCAGGCAAGGCGAGGCAACTGTC 4761087 30 96.7 31 .............................A TGGCCCCGGTCCAGCCCGGCGGGTGGCTCGG 4761026 30 96.7 31 .............................T GTGGGACAACGACTACAAGCCGCAGGACGGA 4760965 30 96.7 31 ............................G. TGAGGCCGGGTACCCGGCGACGGTGAGCGCG 4760904 30 100.0 31 .............................. GCGGAAGGCCCGAACGGACTGGACGCCGGGG 4760843 30 96.7 31 .............................A TGCTCGGAGGGACCGGCCGCCTCATCGGGAG 4760782 30 93.3 31 .........T...................T GCTCCATCGACTTGCGGCCCTCGCCGCTGTT 4760721 30 100.0 31 .............................. ACCGGAAGGTCCAGGCCGAGCGGACCTTCGT 4760660 30 100.0 31 .............................. TGATGGCCCCGTTGACTCCGGCCTGGACGAC 4760599 30 96.7 31 .............................A CCCAGCCCGACCCGGCCAAGCACAACGCGTG 4760538 30 96.7 32 .............................T GCGCGGCGTCGGGGGGGGAGGTAGCGCGCGGT 4760476 30 96.7 31 .............................C TCCACTGGAAGCAGTGGGACGACCGAGCCGC 4760415 30 100.0 31 .............................. AAGGGGCGCAAGGGCCACGTGGACCGCTCGG 4760354 30 100.0 31 .............................. CTTCGAGCTTGTAGCCGCGCGGGTTCTTCAT 4760293 30 96.7 31 .............................C CGTTCCGGGAACGGGTGCTGCTGCGGAACCT 4760232 29 90.0 31 .....................-......TC CCATGGGTGCCTCCTGGTTGGGCCGGGCTGT 4760172 30 96.7 31 .............................A GCGGCTTCCCCACGCGCCAGGCCCGGAGCAT 4760111 30 96.7 31 ............A................. GCCCGGCTGGTGTCCAACCACCGCCGGGCCT 4760050 30 96.7 32 .............................C GGTCGGCGGTCAGCTTGTCGAGGGCCTTCTCG 4759988 30 100.0 31 .............................. TCATTCGCTGGGCGACGCAGGCGGACGCTGA 4759927 30 100.0 31 .............................. ACAGCGCCCCCAGCTCAATTGGGCTCTGAGC 4759866 30 96.7 31 .............................C CGACGCCGCCAGCACCCTCCTGGAGCGCACC 4759805 30 96.7 31 .............................C TCACCGAGGCCGCTCACACGAAGTTCGGGTT 4759744 30 93.3 31 ............................TC TCAGCCTCACAGCAAGACGGCACGGCCGGAG G [4759721] 4759682 30 96.7 31 .............................C TGGAGACGCAGTCCGGCGCGCAGGACAAAGC 4759621 29 80.0 27 .................-....CCCC.G.. CACGATCATGCGGCGGATGGCGACTCT 4759565 29 93.3 0 .........................-...A | ========== ====== ====== ====== ============================== ================================ ================== 30 30 96.6 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : CTCACCGACAAAATCCCACCCCACATCCCCAGGGCAACAGAAAACCGATCACCAGGCTCCAAGGAACCGACCCACGAAGCGCTACTGGTCGAATGCACCAACTGCCGCCGCCCAGGCCCGCCTCAAGCCCTCCCCGACGGCCTCTGCCGCCCCTGCCACCACGCACACACCACCGGCAGCGACCCCACCACCCCCACCCCGGACGAAGTCGCCGCCGTCAAAGCCCACATCGCCAACCTCCGCCACCTCCTCAAACCCGTCTGACCCTCGCCAGAAGACGACCCTTGGGCAGGGCAGGCACACCGCCCCCGGGACCAACCCCACGGAAGGCAGAGCCACACACTTCCACCGAAGCGGGGACGATGAGAGCAGTAGTGGGCAGAATGACATCAGCCGAACCACACACATGACCACTTTGCGTCAGAAGGTGAGATATGCCGGTTTCTCAACAACATGGTGAAAACCGCCTTCCCGTCACCTAAACCCCCAGGTCACGAAGG # Right flank : CACACCATCGCTTACGTGAGATCACGGCCTCGAAGCCTGGAAGGGCGGAACCTACGGCCCCTGCTCCGGCGGGTTCCGTGACCATTCGAGCCCCTGGCCGCCGACCCCGATCCGGCGCTCCGGAAGCCCGTAGATCCCGAAAGGCGGGAACAGGTCGACGCGGCGCGGGCAGCCGCTCTCCGCGCACGCCCGACACAACCGATCCCGGCCCCGATCGGTGTGCCGCACGGCAGTCGCCGGAGCGCGCCAACATGCCTCGCACGTGCGGACATCCGTGGTCGACAGATCGGGGCTCATCCAGCACCCTCAAGCGCAGTGGCCCCCTCGTGACACGGACAGGCGCACGTCGGCAGACGGCACAGGGCGTGCACACCGGCCAGGTCTGTCACCAACGCGCTGCGACACACCACGCTGCACGGCCCGTCCGCACCGGCCGTCAACGCGTCCAGCGCTACAACCGGCTCCCCGGCCTCATCGCCCCCGGTGATCGGATCACCTCG # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //