Array 1 2243343-2249177 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT575472.1 Clostridium nigeriense strain Marseille-P2414T, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2243343 36 94.4 30 T....................C.............. TATCCAGTTCCTGCTATTGCTGCTCCTGCT 2243409 36 100.0 30 .................................... TGAACCATTATTCTTTGTAGATGTTCATGT 2243475 36 100.0 30 .................................... AACCACTTTCTTTTATTAATTCAATTTGTT 2243541 36 100.0 30 .................................... AAATTATTTTTATAGTGTAATGCACATAGC 2243607 36 100.0 30 .................................... CGCTAAATATCTAAATCCAGTTAAGTAATT 2243673 36 100.0 30 .................................... ATTAAGAAGGTTTTTAAAAGAGTTGTTTTG 2243739 36 100.0 30 .................................... TTAGATTTATTAAAGTATAATCTCCACTTT 2243805 36 100.0 30 .................................... GTGTTTAAATGTAATTTAAAGCTTATTTAA 2243871 36 100.0 30 .................................... TTTTATCACTCTCCTAGGACCGTTGGAGGT 2243937 36 100.0 30 .................................... AAAAGGCTAACACCAGAGGGTATGATTAAG 2244003 36 100.0 30 .................................... TTCCCATCAATAGATAGCATAGGAGCAGTA 2244069 36 100.0 30 .................................... TTTCATTGATATAGTAGTAATGCTCTTCAA 2244135 36 100.0 30 .................................... TAGGCACTTTAATTCTATTAGTAGCGTAAC 2244201 36 100.0 30 .................................... GCTTACTCAATAGATAGTTTCAAGGCTTTT 2244267 36 100.0 30 .................................... TTAGATTTATTAAAGTATAATCTCCACTTT 2244333 36 100.0 30 .................................... TAATTCATAAATGTATATAAACCTAAAGCT 2244399 36 100.0 30 .................................... CTTCACCCCTACCAAAAGGAGTATCTTTAG 2244465 36 100.0 30 .................................... TTCATATGCATTTGAAAGTAATAAAAATGG 2244531 36 100.0 30 .................................... AAGATACTTAATGCTGTATCAGCACAAGAA 2244597 36 100.0 30 .................................... TCTCCTTTTCTTATATCTTTAGTTTATTTA 2244663 36 100.0 29 .................................... TATATATTTCAGTTGATATACTCTCTACT 2244728 36 100.0 30 .................................... GGAAGAGAGAGCATACAAGAGATAATGCAA 2244794 36 100.0 30 .................................... TTCTATTATAGTTGATACTTCATAGTTACA 2244860 36 100.0 30 .................................... ATAAACCCTGTCCGTTGTATTGCTCTGTCA 2244926 36 100.0 30 .................................... TAGGATATAGACAATAAACTAAATACCAAC 2244992 36 100.0 30 .................................... TCTTTTTCAGTACACAACTCTCTCATTTCT 2245058 36 100.0 30 .................................... TTCATTTGAGAAACTAAACTACATTCTTTT 2245124 36 100.0 29 .................................... ATTTATATTATGTCTACATATTCGCCTAT 2245189 36 100.0 30 .................................... TTTAAAGCTATATTACCTATAGTTAAGTCA 2245255 36 100.0 31 .................................... TAATGCACTATTGTAAGCATCAATACCTTCT 2245322 36 100.0 30 .................................... ATAGTTTAAAAAGGTAGGCTTTTGTCTACC 2245388 36 100.0 29 .................................... TTAATTCTGTATTCCATTGAGCCACCCAC 2245453 36 100.0 31 .................................... CTACCTGATGTGGACAGTCATCTTCTTCTAG 2245520 36 100.0 30 .................................... CAATATAGAACATAACCACACTATAAATAC 2245586 36 100.0 29 .................................... CAAACATTTAATCACCCCTTTCTTATATT 2245651 36 100.0 29 .................................... CTTAACCTTATATCTACTATTGCACGTTA 2245716 36 100.0 30 .................................... AGAATCTAAATATTTAGTCCAAGATATAGA 2245782 36 100.0 29 .................................... TCTCCCTGATGTAATATCCGGAGATGTTA 2245847 36 100.0 30 .................................... TTTGTATTTGTACTATCTACACCGATTATT 2245913 36 100.0 30 .................................... TAACTATGTTCAACATCACTTTCAGCTAAT 2245979 36 100.0 30 .................................... ATTACCTCCTTATGTAGTTATTACTTAACT 2246045 36 100.0 30 .................................... TAAAGAAGGGCGAAAAAGCATTTTTACAAA 2246111 36 100.0 30 .................................... TCTACAACTTTAACATCTCCGTCAACAACT 2246177 36 100.0 30 .................................... ATGATGTTACCAACTTCTACAAATGAAGGT 2246243 36 100.0 30 .................................... ATGAATATAATAATGGTAATCTACCTTTAG 2246309 36 100.0 30 .................................... TGGTTTAAATGTCAAAAGTTAAATTCGAGA 2246375 36 100.0 30 .................................... ACAAGAAAAAATTAAAGCTGCAAGTAACTA 2246441 36 100.0 30 .................................... CTCCCCTTCTTATTAGTGAGTTCTTGCTTA 2246507 36 100.0 30 .................................... TATAAATCCCAAAGCTACTAATGATCCTAT 2246573 36 100.0 30 .................................... AACCATCAACTACATTTGTAAATACACCAG 2246639 36 100.0 29 .................................... ATATAGATCGTCTATTAATATATTCCCAG 2246704 36 100.0 30 .................................... TTTTTATCCCTAGTTATATCAGTATTTTGT 2246770 36 100.0 30 .................................... ATTAGTTAGGGATGTAGCACACTTAGTTAC 2246836 36 100.0 30 .................................... CCCCAAATACCTTTTTATCAGTTCCTTCTC 2246902 36 100.0 30 .................................... TCAATGTCTTTTAATTCATCCTTATATCTT 2246968 36 100.0 30 .................................... ATGGTGATGATTCATTATACGCAAAGGTGG 2247034 36 100.0 30 .................................... CGGGAGCCGTTGCTATATTAGCTGGAGCTT 2247100 36 100.0 30 .................................... AGGTCTCTAACCTTTTTAGGTATATTGTAT 2247166 36 100.0 30 .................................... ATACTTTTTAGAATCGTCTTGTGTTTTTTC 2247232 36 100.0 29 .................................... ATACTCCACTTGGTAAGATAGCATTTTTA 2247297 36 100.0 30 .................................... AATGCTTATTATGGGTGTTACGCTGATGAA 2247363 36 100.0 30 .................................... TACCTATATTTCCAATTAATCCCTTATAAG 2247429 36 100.0 30 .................................... TTGCAGATGTTATATAACATTATCAGATGG 2247495 36 100.0 30 .................................... GAAACCTCAATATCTAGTACTAAGTTTATT 2247561 36 100.0 30 .................................... TGTAGTATGGAAATATGAAGATAATAACGA 2247627 36 100.0 30 .................................... TGATGATGTTGAAGAGGGGGAACTTGTAAT 2247693 36 100.0 29 .................................... TTAATCCTTCTTTAGCTTCTACGCAATCC 2247758 36 100.0 30 .................................... AATTGGTTGAAAATCTATTAAATGTATCTT 2247824 36 100.0 29 .................................... TAACAATAGATGGTTATTTCTTTGAAATG 2247889 36 100.0 30 .................................... AATTCGTCCCACGGTAAGCGTGTTTTTTTA 2247955 36 100.0 30 .................................... CCACAACTTTGCATATCTTTATATAGTGGT 2248021 36 100.0 30 .................................... AAAAAATCCGTCTTATGCAGCACCTATAAG 2248087 36 100.0 30 .................................... AAACAAGTGATTTATCTTCTTACGCAAGAA 2248153 36 100.0 30 .................................... ACTAACGGCATATTTTCCCTTCTCCTTTAT 2248219 36 100.0 30 .................................... ACAAGAATTATATATGAAGTTGATGTAATA 2248285 36 100.0 30 .................................... TTTAAATCTAATATCAACTATAGTAAGATA 2248351 36 100.0 30 .................................... AGCAACATTTCTACTTATTCTATCTAATCT 2248417 36 100.0 30 .................................... TATCCAGCTCCTGCTATTGCTGCTCCTGCT 2248483 36 100.0 30 .................................... TTTTCTCTTCAAATAAAGAACCTCCAAACT 2248549 36 100.0 30 .................................... AGGAAGGATGTTATTACTACAACATGGCAT 2248615 36 100.0 30 .................................... TCCTATAGCTTTTTCACAACATCCATTTGT 2248681 36 100.0 30 .................................... TCCTATAGCTTTTTCACAACATCCATTTGT 2248747 36 100.0 30 .................................... TTTAGTCCAGAAGATAATATTACACCAGAT 2248813 36 100.0 30 .................................... TCATTTCGTCTTATAAGTTATATACAAATA 2248879 36 100.0 30 .................................... TTATCCCTATTTTTTTAGCATTTATTTCAT 2248945 36 100.0 30 .................................... TTACCATCTTCAACACTTCTTACTCTTCCA 2249011 36 100.0 30 .................................... TAAGCCACCATCCAATTGAGTTTTTGAAGT 2249077 36 100.0 29 .................................... TTTCTAAAGTTATAGGATTAGGAAGTTTA 2249142 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 89 36 99.9 30 GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Left flank : ATCTTATCTATCCTGATCAATAGTTCACGTTCCACATTGCTAATTAAATTACCTTCATTATCTACATATACTGTTTTAGGCATACTATTACAATTAATACATTTAGCGTCCCAATATTCATGAAGCTCATTTCCCTTATCAACTGTAATCCATCCCTTAAAAATATCTTTCCCACATTTTTCACAGGTAGAAAGTGCCGTTTGATATTTCTCATACATAACCTGTTCAATACTACTACCACATTCCGCGCAATAATAAAATACAGATCCTATGTTTTGTTTTATTTTCAAATTAACACTCCCACATTTTTTACACTGAGCTGTTCTATTAACTGCTCCCATACATTACTTCTCCTCTCACCCCATTAATATTTAAATATATTAATAAAATTTTCTCTTTATTCAATATATATTTGTTTTTCATATTTTATAACATTGAAAAATTCATCAACTTTCAGAAATTTATTTTAATATTAATTAATGTATTGAATATCTATAATT # Right flank : TACACATGCTTAAACCCCTTGAAAACACTAAGTTTTAAGGGGTTTTTACTATTTAAAAAACATTTAATTGTCCTGAATTTATTTGTTTTTCTTGCTTTTTTGGTGAACCTACAAGAAATTTCATTTCTGTATATTGCTTTTCTGTTATTTGTAAATATCTAACCGATCCCTTAGGTGGAATATTCTTTTGAAGCCTATTAATGTGCTTATTTGTTCCATCTATTCCATTACATATTCTTGAATAAACTGAATATTGTAGCATTATATATCCATCATTTAATAAAAATCTTCTAAAATTTTGATATTCTTTTCTATCTTCTTTTTTAACAACAGGTAAATCAAAGAAAACTAATAATCTCATATATCTATTACTCATAATAGTGGTATTCTATATCTTTTATTTCTGGTAATTTTATTAATCTATAATCTTTTTTATTACAAGCTGTTGTATAAGAAGCTACCATTTTATCTATTGCATTTAATACTGAATGATTTTTTCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 2981314-2981087 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT575472.1 Clostridium nigeriense strain Marseille-P2414T, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 2981313 30 100.0 35 .............................. TTTTCTTTTACTATTACATAAGAGTTCTTAAGTCC 2981248 30 100.0 36 .............................. AGCACATTAACATTTATATAATTTCCATAAAGTAAG 2981182 30 100.0 36 .............................. TTGGTTAATGTTCGTAAATTAAAATATTTAGTGAAC 2981116 30 96.7 0 .........................A.... | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 99.2 36 GATTAACATTAACATGAGATGTATTTAAAT # Left flank : TTTAAGAAAATGGGAGAGGATATTGTGGAAAAATTATTTATCATATTTATTTTAGCTTTAATATCTGAAAGTGTTTGGGAAACATTAAAGATGACCTGGCAACAGGGGAAAATATCTGTAGATAGGATAGGAGCCTTAGTTGTATCTTTAATTATTTGTATAGATGTTAAACTAGATATTTTAAGTTTATTAAATATTAATACAACATGGCCCTTTGTAGGAATAATATTAACAGCTATCTTAATATCTAGAGGATCTAATTTTGTCCATGATTTAATAGTAAAATTAGGACAAGCTAAAAGTAATTGATATTAAAAGCAATATGTTTTTACCAAGCAAAATTATAATATTATTTTATTAAAGTATGTAAGTAAAGGCATTTGCATAGATTTAAATTAAAAAATTGAAAAAATTAAAATTACTTGGTAAAATATCTATAAAACATAGTAATATAAGATGTTTAGAGATTTTAATAAAATAAGAGTGGCTTAAAATCAATG # Right flank : TTATAGCTTTAATTATAAGAATATAAAACAAAAAGTACACACTACAATGTGAAGATAGATACAAATAAAATATATAATTGATATACTTGTTATGGATATATTTGTAAAAGAGTAGTGTATTAAATTTAAGAAGATTATTTTGAGTATTTTTATTGTGATACTAGTAGTTCTTTCAAGTAATATTCTAATTTTTAGTAATATCAAAGTTAGAATAATAGGTATAGAAGATAATAAAAAGTTATATTATATGATTTTAATAATGAAATACAAGCCATAGATATAGAAATAAGATCTTCCTTTTAAAATATTAAATCAAGAGAAGTTAAGGTTTTTAAAAATGGAGAATATTTTAAGAGTGAAAATATAGAAGGAACTAAATGTATGACTTTTGATAATTATGGTGATTATAAAGAAAATTTAAGAAATAGTAATTTAGAGAAATATCTTAATTTTTAAAGATATGCTAGGCAGAAAAGCAGTATGTATAAAATCTACCCAGC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //