Array 1 897331-895062 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOGZ010000001.1 Clostridium perfringens strain 2C45 NODE_1_length_897330_cov_127.178, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 897330 33 91.7 30 ---................................. ATAGGACTTTTTTTATTATGAGAGTTGTTA 897267 36 100.0 30 .................................... CATAAAATGACAAAGGAAATCAAAAATGAG 897201 36 100.0 30 .................................... ATAGGACTTTTTTTATTATGAGAGTTGTTA 897135 36 100.0 30 .................................... TTATAAAATTTAGGAAGATTAGTTACAAGT 897069 36 100.0 30 .................................... GCTGTAGAAATAGCCTCATCTCTTCTTTGT 897003 36 100.0 29 .................................... ACATAGAGTTTACGTATGTAGTAGATTCT 896938 36 100.0 30 .................................... AGGATTTTGATAAGAACATAAGAGAAGGCA 896872 36 100.0 29 .................................... CCAAAGCCTTAAACTCATCTATAAAAAAG 896807 36 100.0 30 .................................... TATTTTTTGTAACATAATACACCCCCAAAT 896741 36 100.0 30 .................................... GATGAAGATTCTATTGATGAAATCTTGCAA 896675 36 100.0 30 .................................... CTATTATGAAAAGACTAGTATTAGAAGTAA 896609 36 100.0 30 .................................... AGGATTTTGATAAGAACATAAGAGAAGGCA 896543 36 100.0 29 .................................... CCAAAGCCTTAAACTCATCTATAAAAAAG 896478 36 100.0 30 .................................... TATTTTTTGTAACATAATACACCCCCAAAT 896412 36 100.0 30 .................................... AGCTGAAATGCTTAAACCTATTACAGACGC 896346 36 100.0 29 .................................... TATAAAACTCTTGAATAACACTACCATTA 896281 36 100.0 30 .................................... GTTTCTTTAGTCATATACTTTGTTATATAA 896215 36 100.0 30 .................................... TCTCATTATCGAGAATTATGCCACCTTCTA 896149 36 100.0 30 .................................... TTTGAGTTATTAATGTTTGATGAAGATATT 896083 36 100.0 30 .................................... GAACTTATAGGAGCAGTATTAACAACAGAA 896017 36 100.0 28 .................................... GCATGAATTAATAATGGCTCAATTTGAA 895953 36 100.0 30 .................................... GATGAAATAAACCAAGCTAAATTGAAGTTA 895887 36 100.0 29 .................................... TTAAATCGTTGTTTAAGTATCTCATAGCC 895822 36 100.0 30 .................................... AACTCTTTCTTTAGCTCTAATCCTATAGGT 895756 36 100.0 30 .................................... GATGTTGAGGGAGATGATGTTATTTTAAGA 895690 36 100.0 30 .................................... ACTGATAATATGGGAGTTAAACATAAATTG 895624 36 100.0 30 .................................... TTAAGAAAATTATACCACTTTTGAATAAAG 895558 36 100.0 29 .................................... ACATAGGAGAGGAAATTGAGAGATTACCC 895493 36 100.0 30 .................................... TACTTATAATTATTTAAATAGTGCTAGAGT 895427 36 100.0 30 .................................... GAGAATGATGTTGCTAATAATGAAAAAATA 895361 36 100.0 30 .................................... TTAAAAGGTGCATTAACTCCAATGCTCTTG 895295 36 100.0 30 .................................... GTAAGAATGGGATTTGTCTTGGCTCCTCAT 895229 36 100.0 30 .................................... TTATATTAGTTACTCAAAATGATAGGCTTA 895163 36 100.0 30 .................................... AAGAGTTAGTACGGAGGAGCAGAACGAAAG 895097 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 35 36 99.8 30 GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Left flank : | # Right flank : AGGAACTAATGAACCCCTTGAAACAACTAATTTCAAGGGGTTTTTACTTTCTAAAAAACATTCAATTGTCGTGAATTTATCTTCTTTTCCTGCTTTTTTGGTGATCCTACTAAGAATTTCATTTCTGTATATTGCTTTTCTGTAATCTGAAGATATCTTACTGATCCTTTTGGTGGTAAATTTTCTTTTAGTCTTGCTACATGTTTATTTACTCCATCAATACCATTACATATTCTTGAGTAAACAGAAAACTGAATCATTAAATACCCATCATTTAATAAAAATCTTCTAAAATTTTGATATTCTTTTCTATCTTCTTTTTCAACAACTGGCAAATCAAAAAATACAAGTATTCTCATAAACTTTTTACTCATAATAATGATATTCCAAAGGCTTTATCTCTGGTAATTTTAATAATCTAAAATCTTTTTTACTGCAAGCTGTTGTATAAGAAGATATCATTTTATCAATTCCATTTAAAATAGAATGATTTTTTCCAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 1024-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOGZ010000016.1 Clostridium perfringens strain 2C45 NODE_16_length_60747_cov_107.957, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1023 36 86.1 30 A...ACA...A......................... ATGAAATTATATTTTGTCTATAACATATCA A,A [1009,1015] 955 36 100.0 30 .................................... ACTTGTAATGTAGATTCAGTTCTTAATGTT 889 36 100.0 30 .................................... ATTAAGAAATTAATGGTCTGCTGCACAATC 823 36 100.0 30 .................................... GAAAATAATCTTTTTAATGAATTCCCACTT 757 36 100.0 30 .................................... TTAAGAGGAAAACTATGGGAAAAGCGTATG 691 36 100.0 30 .................................... ATTCTAAAGTAACTACATTAACTTCTAATT 625 36 100.0 30 .................................... AAGCAAGAGTTAACAGTTGTTAATAACAAA 559 36 100.0 30 .................................... CCAGGGACTACAGAATATATGTTGAAAATA 493 36 100.0 29 .................................... TCTTTTTTATCTACATCCCATATTTCCAC 428 36 100.0 30 .................................... TGTTTAGCTTGCTTAACTGCTAAGCAAAAA 362 36 100.0 30 .................................... GGGGTAACACTAACATATAAAGAAAATGAA 296 36 100.0 30 .................................... CAAATTCTTATGAAAAGTTTGTTGAAAAAC 230 36 100.0 30 .................................... CATAAAATGACAAAGGAAATCAAAAATGAG 164 36 100.0 29 .................................... AAACTATGAGTGAAAATGCTAAAGGTTCT 99 36 100.0 30 .................................... ATAGGACTTTTTTTATTATGAGAGTTGTTA 33 33 91.7 0 .................................--- | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 98.6 30 GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Left flank : AGTTTCTAAAAGCAGCAAGTCTATCCTTATTCTTAAAGAAAGTATTGTAAAAAGTAAATGCTTCCTTAAGATAAGGATTATTAACTTTCAATTCTCTCATAATAACAGTAGCTCTATCTGTAGAAAATTCCTCACTATAAGATAAAATATCATAAAGCCAATCTTCCTGTGGTTTAGGTTTTTTCATATTAGAATAAACTAGAATATTTCCATCTACATTTTCTTTTTCTATATGATATTTAGTATAAAAAGCATTGTTATCATTTAACTTAATAAGCTCAACACCCTCTAAATCAAATTCATCTATCTCTTCAGTAAAATCCTCATTTTCATCATACCAGAAAACAATATGACGTACTTTTCCATCACCTAATGGTTTTGAAAAAATATCATTAAGGAAATTCTTAATTTCTTTTAAGTTCATTTGTCACCTCTAAATAAAATTTTATAAATATTTTTTAAATTAATATATAATAATATAATAACTTAAAAGTAATAAA # Right flank : T # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //