Array 1 195-31 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAYX01000051.1 Neisseria sp. KH1003-01 NODE_56_length_221_cov_10.5426_ID_111, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 194 32 100.0 35 ................................ AGGCCATCCTAATTGCAGATGTACGGTTATCCCTG 127 32 100.0 33 ................................ AGGCCGTCTGAAAGATGCCGCGCTTGAGAAAGC 62 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 3 32 100.0 34 CCAGCCGCCTTTAGGCGGCTGTGTGTTGAAAC # Left flank : TGGAGCTTGCAAGCGAGAGTAGCCAT # Right flank : CCTTGACCCTGTCCCAACTGATAGAGACATT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCCGCCTTTAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CCAGCCGCCTTTAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [26.7-20.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 43422-43807 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAYX01000001.1 Neisseria sp. KH1003-01 NODE_10_length_91722_cov_8.67949_ID_19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 43422 36 100.0 34 .................................... TCAAATGCCTCAGACATGCAGTCAAGGTCAGTTT 43492 36 100.0 35 .................................... GTATAGCCGGAAATAGAGAATACTTCTTTAGCTAC 43563 36 100.0 33 .................................... CCGATAACTTCACCGAACAATGCGGCTAACACT 43632 36 100.0 34 .................................... GCAATGGCCTTCTTGCAATCGTAAACGCTGATAA 43702 36 100.0 34 .................................... TTATTCCAAAAGGAATACCTCCGTTTAGCTCTTC 43772 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =================================== ================== 6 36 100.0 34 GTCGGAAGACTTGCCCCACTAATCGGGGATTAAGAC # Left flank : GGCAAGAAAGAATGGAGGAGCAACCAAACAAGATCATAGGCAACCAAGCACACGACAAACTCTATCAAGAATGGAAGGCAGCCTTGCAAACCGCCGCAGAAAGCCCCGATTTGAGCGCAGAGCAGAAAGCCGAAATCGCCGTTGCGTTTGCCGTCAAAAAGATGATGACAAAATACGCGAAATGGCTGACCGACAAGCGCGGCAAAGATCTGAAACCCATCTTGGCGAAGCTGCGCGGAGAATAGATTTTCGTCTTTGTCTGAGCCCGAACTTTTCAGACGGCCTAAAGCCGTAAAACGGTTAAAAAGCGTTGTCGAATACGGAGTACATGGCTATAATCCGCAATACAAGTTTTCCGACGGATAGCGAAAAGTCTGTCTTTCGGCTGCTCTTTTCAGTTAATATTTCGTTAATTAATGTCTTTGTTTGTTAAGAGAAAATGCTAACGTTTCTTAACCATACAGGGCTTTGAAAATAATGAGATTTTTTAATTGAGTGCA # Right flank : CGTCGAGATGTCGCTGATACTGCGCACGCCTTCGGTGTCGGAAGACTTGCCCTGTTAACTTTGGGACGAGTGTTTTTCAGACGGCCTAAAAGCAAGGCCGTCTGAAACGGTTGGGTGGTTTATCCTGTCCCTCTTGCGGCAAACAGCAAAATAGCCTTGATATTGCATCAAGGCTATTTTTGTTTTTTGATCGGTTTTTTAGTTTTGGATACCAAGCAGGTTGGGAATGCCGGATGGGGCCGTCTGAAAATCAGGGTCTGCTGTCGGGTTGAGGCTTAAAAAATATCGGGTTGCCCATCCTTTATTTGTATTTTGTTTTTCATCAGCCGGCAGGCGGTATATAAGCGGGTTGGTGTTTACAGTGTGCCGAAGTTGCCCAATATGATGCCTTCGGGCAGGGCGGTTTGCCCCAAAGTATGGATGATGCTGCTGTTGGCCAGTGGGTAGAAGCGCAAGTCATCCTGTTTGGGATGGAGCATTCGGCATAGTTCTTCAAAGCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAAGACTTGCCCCACTAATCGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0 Confidence: HIGH] # Array family : NA // Array 2 50319-48806 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAYX01000001.1 Neisseria sp. KH1003-01 NODE_10_length_91722_cov_8.67949_ID_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 50318 36 100.0 35 .................................... ACGCCTCAAGGCCATGATAATGAATAGAAGTAGAT 50247 36 100.0 32 .................................... CAGTATGTGCCATACAAACAGAGTTTACTTTG 50179 36 100.0 33 .................................... ACCGAATGTTTCTTCGATAGCCAGCAGGTGTTT 50110 36 100.0 34 .................................... CAATAGCCAGCAGATGTTTAGCATGGGTTTTTAC 50040 36 100.0 33 .................................... AGGGCAACAAATTTGGTTTTCAAAGCAGTCAAC 49971 36 100.0 35 .................................... CAAATGTCACGAATGCTTTACCCTTGCGAGTAACA 49900 36 100.0 34 .................................... CATTTTGAAGCCTTCCAATTTGCGTAGATTTGAG 49830 36 100.0 33 .................................... TTGCTACAGAAATCCATTTATCAAAAATCTCTT 49761 36 100.0 34 .................................... GTTTTTCCTGCAGTTCGGTTCGGGTTTGTTCATA 49691 36 100.0 34 .................................... GGATGCAATTCCGCGCTTGTAGCCGAATTGACCA 49621 36 100.0 35 .................................... AAACGGAAGTTGTTCTCCATCAAAATTGGGAATTT 49550 36 100.0 37 .................................... GTAGAGCTACTAAAGTACTCTTCGTTACGAAGAATAT 49477 36 97.2 35 ............T....................... TCAGAGGTCAAAGAGTTAAAGAAGTTTACAATATT 49406 36 100.0 33 .................................... TTTATATTCAACTCCTAGCTCTTCTAACATATC 49337 36 100.0 36 .................................... AGCTGCAGCTTGTTCCTCTGCGCTAGAAGAAGACTC 49265 36 100.0 34 .................................... TTTACAATTGCCATCGACAGTACATTCAATTTGT 49195 36 100.0 33 .................................... ACTATAAGTCCATTTATAGACAAATATGTATTT 49126 36 100.0 33 .................................... GTACTGTCCCATCCATATTGTTACGAGCTACTA 49057 36 100.0 34 .................................... ATGCGTGATTGGTTGTTGATAATCCAAGTAGATT 48987 36 100.0 34 .................................... ATGCGTGATTGGTTGTTGATAATCCAAGTAGATT 48917 36 100.0 34 .................................... GCAGACAATATTACGGGTGCGGACATAATATTTC 48847 36 88.9 0 .......................TT...C..T.... | CT,TA,T,T [48810,48818,48821,48829] ========== ====== ====== ====== ==================================== ===================================== ================== 22 36 99.4 34 GTCGGAAGACTTGCCCCACTAATCGGGGATTAAGAC # Left flank : TGTTCCACAAAAACCAACTGATTTTTTGCGAGCTCAAATCCGATTTAAGCTCGCAAAGCAAGCTGGCAGACCCGCTAAGGCAAGTCATCGACCAAAGCCACAACATGGGCAAAGTACGACGCGTCCTGATTTTGTCGCCCGTCATTAAAGACAATGCAAAGCCGCAGCAATGGATGGAATTCGAACGCAACTGCGCCGCCAAAAACATCCAAATCATCATCGCCGTCAACAAAGAATCGCTGAAAATCCTGACAAACTGACATCAAAATCCCCTTAACACTTTACCGTCGTCTGAAACAGCTAAAAAGCATTGTCGAATACAGAGTACAAAGCTATAATCTGCATCACAAGTTTTCCGACGGATAGCGAAAAGTCTGTCTTTCGGCTGCTCTTTTCAGTTAATATTTCGTTAATTAATGTCTTTGTTTGTTAAGAGAAAATGCTAACATTTCTTAACCATGCAAAGTTTTGAATATAATGAGATTTTTTAATTGAGTGCA # Right flank : GGCCTTACTTTAAGGCCGTCTGAAAATATCCGCTGTCTTGCCCTTTTCATTGGGACAAAAATAAAACGGCCTTGACGGTTTGCTCCGTCAAGGCCGTTTTATTGTATCCGGCGTATCTTTACAGTGTCCGAATCATGCGGTACTGCCCGTTGCCGAATACCGTTTCTTTTCCCAAATGCAACCATTGCCCGATATACAGCATTTGTGCGAAAGCGGGGGAAAGGTCGGTCAATTGCCATGTTCCGATGATGCCGCTCAACGGCGTAGTTTGCTTTTGACGATTGGAAAAGCGGCGGTGTTCGTGCCATAAAAGCTGCGGGGACTGTCCTTGTCCTGCGGCTTGTGCGGTCAGCTCGGCCGTGTCGGCGTTGTTGTGCCAATAAAGCCGGGCAAGCGTCAGATAGCGGCGCATAAGTTGGCGCAGAAAAATTGCCTGAGTAAGTTCGTTCTCGCGCAAAATCCTGCCTTTTTGCTGAATACGCAAGGGGGTGAGCAGCTGT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAAGACTTGCCCCACTAATCGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 1 48921-43276 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAYX01000056.1 Neisseria sp. KH1003-01 NODE_7_length_151495_cov_8.3691_ID_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 48920 32 100.0 35 ................................ TTCAACCCTTAAACAAAAAAATTAACGATAGAGTC 48853 32 100.0 35 ................................ TATCGAATTGGAATTGATTGATGATTACGGCATGG 48786 32 100.0 33 ................................ TTACAGTATAGCTTCCGACCATTCAGCACCTTA 48721 32 100.0 35 ................................ ACGCCGTCATGCGTCCAGAACTCCGACTGGCTCAG 48654 32 100.0 35 ................................ TATCTAAAAAGGAATTCGTTATGGATATTGCAAAT 48587 32 100.0 34 ................................ ATTTGTTCTTTTACATATTCATCTAACTTTGCAC 48521 32 100.0 36 ................................ GTTATGGATATTGCAAATATGGGTATGACCGCTGTA 48453 32 100.0 36 ................................ ATAGCGTTCATATTCTTGAGCTTCACAGTAACTGTC 48385 32 100.0 36 ................................ TGCCCTGTCTATGGCTGATGGTATTGGTGACGTTAC 48317 32 100.0 35 ................................ TGCCTTTAGATATTCTTCTTTTTCCGGGTCAGTTT 48250 32 100.0 35 ................................ ACATTACGATTATGTGTTTTCTCGTAATAACCAGT 48183 32 100.0 33 ................................ TTAGTATCTTGCTCAATCTCGTAAAGAGCATTA 48118 32 100.0 34 ................................ GTTATGGATGTTGTAAATATGGGTATGACTGCTG 48052 32 100.0 36 ................................ ACGCACGGCTTTGCCGGTCTGATATGCAGCGGACGA 47984 32 100.0 33 ................................ AGGCCGTCTGAAAGATGCCGCGCTTGAGAAAGC 47919 32 100.0 36 ................................ CTTGACCCTGTCCCAACTGATAGAGACATTGGGGAT 47851 32 100.0 34 ................................ CCTGGCGTGGAGCTTGCAAGCGAGAGTAGCCATC 47785 32 100.0 35 ................................ AGGCCATCCTAATTGCAGATGTACGGTTATCCCTG 47718 32 100.0 34 ................................ ACGGCTCGTTTCCGCCACGCTGCGGTTTACCTGC 47652 32 100.0 34 ................................ CGGCTCTTGGTCGTAAAACCGTCCAACGCCTCAA 47586 32 100.0 34 ................................ AGTTATAGCCATAGTGTTTGGGGATTGCGGGTAT 47520 32 100.0 37 ................................ AGGAGTATTGGGATTTGCTGCTATCGGGCGAGACGGC 47451 32 100.0 34 ................................ TACAACGTTGGGCATTCCAAACCGCGCGAACGCG 47385 32 100.0 34 ................................ CAGTTTGAGCCGATAGTGCGACCGCCACCCACGC 47319 32 100.0 35 ................................ GTCCGCATAGACACCGTACTCATACATACGGGTAC 47252 32 100.0 34 ................................ TACTGAATACATTGATAAAGGAGCTTCAGAATAT 47186 32 100.0 35 ................................ TCATTTGAGCGCCGCAGTGTTTGCTGATGTGGCTA 47119 32 100.0 35 ................................ GCATATCGGAAACGCTCCGCCCCAAAACTGACCCG 47052 32 100.0 34 ................................ AGCAATTGCATTATTTAATTCATTGGTTTTTTGT 46986 32 100.0 36 ................................ AGTAAAAACATGGAATATAAATCTACATTAGCAGCG 46918 32 100.0 35 ................................ ACGATGTTGATTAAATACTTCGTTTTCTTCTGCAG 46851 32 100.0 35 ................................ TTCTATGCCACTGCCAACACCAGCCTGTATGACAT 46784 32 100.0 34 ................................ AAATGCACGGTCGAACCTCCACTGAGAAGCATTG 46718 32 100.0 35 ................................ CAAACAAACTCATAAGCCGCCATATCCATGTATCG 46651 32 100.0 35 ................................ ACGATACGCGCCCTCGTCATGGCGCAGATAGGCTA 46584 32 100.0 36 ................................ AAGTAAAATTTAGAATTAGGTTTAGTACTACTGGGT 46516 32 100.0 34 ................................ TGCTCGGCGATAGCCTCGTCCATTAAAGGTTGCA 46450 32 100.0 36 ................................ ACGGTCATGATGATTTGCTCAACAGGCGAATAGCCA 46382 32 100.0 35 ................................ AAGATATGCATGTTTGGCTTAAGAAACCTGAAAAC 46315 32 100.0 36 ................................ AACTGTCGGCTCTACTGGTTCTTCAAGTTCCACAAA 46247 32 100.0 36 ................................ TAATTCATAGGCTTCGTATTGTTTTATATCATTATC 46179 32 100.0 35 ................................ TTAACAGATTCAATGGCACCTTCAGTGTTCATTGA 46112 32 100.0 36 ................................ ACACGTTACGGTGTGATGTTGTAAAAAAGGTAAATC 46044 32 100.0 34 ................................ ATTAGGCACATCAGACAGGTTATGGCAAACAAAT 45978 32 100.0 37 ................................ AATTATCTCCAGATGCCATGGAATTAAAACGCCAAGG 45909 32 100.0 34 ................................ TGATTCGTCAGCATATCGCGGATAATTTCGCTCG 45843 32 100.0 36 ................................ AATATCCGATTTAACGTCAACCTTGACGGAGGAACG 45775 32 100.0 37 ................................ AACAGGATGGTATTTTAAAAGTGAATTGTTACCACAT 45706 32 100.0 36 ................................ ATCTCGACTGTGTGAAGAATTAGCTAAAATAGTTTC 45638 32 100.0 34 ................................ CGCGCCATCTTCACGCGCCGAAAAATAAAACGGC 45572 32 100.0 34 ................................ AGTGATAAGGTACTGCTCAGGTACTGCTTTAGTC 45506 32 100.0 34 ................................ AAGTCCTCCAACTCCATGTAGCGGATTGCATTAC 45440 32 100.0 33 ................................ GCATCGGCAGTGTAAACGTAGGTGTTGTCTTGG 45375 32 100.0 34 ................................ AGTGAGTAACCTAGTCAAAGGATATTAAAATGAC 45309 32 100.0 36 ................................ TGCTTGGATGAGCAAGACGTGGAGTACAAAGGCCAG 45241 32 100.0 35 ................................ CGTTTAGTAGCAGATGATGAAATCCCTGTACGTAC 45174 32 100.0 34 ................................ TTGGTAACAACGGTTTCCGCGCCGAACGATACAC 45108 32 100.0 35 ................................ CGAATTGTTGCAAGATTTATAAGTTTTTCAGGGGT 45041 32 100.0 35 ................................ TAGTCAAGAGGGCGATTGTGGGCCAGGCTCTAATA 44974 32 100.0 33 ................................ GTCCTTATCCGCCTCTTCATCATCTTTGGGCTT 44909 32 100.0 35 ................................ ATGCTAATGCCTTAAATCTCACTAAATTGTCTGGC 44842 32 100.0 35 ................................ GTCAGCAGTGTAGTCAACCGCCGCCATGCCATGCA 44775 32 100.0 34 ................................ TTACTCATTTATTTGCCTCGACCTGCGACCGCAG 44709 32 100.0 36 ................................ TCATAACGGCCTATTGGAAAAAACAGGCGTTTTAAG 44641 32 100.0 34 ................................ TGCAAATCCGCGTCAGGTACATTATCTTCAGTCA 44575 32 100.0 36 ................................ TACAAGCATACCAAAGGCCGTTTTGGTACAACCTAT 44507 32 100.0 34 ................................ AAATCGTCTTTGCCGTTTCCGGTGCTTGGGGGTA 44441 32 100.0 34 ................................ TCGCCTGCGACAGCCTTGATGACTTTCTTGCCGC 44375 32 100.0 36 ................................ AGGGGAAATACTCTGACGAATCGCAACAAATGGCCG 44307 32 100.0 34 ................................ CATTGGTTTGCCAGTTCGTCGATTTTGCTTGCCT 44241 32 100.0 36 ................................ CGTAATCCAAGTGCAAAACAAGCTGGCTTTACGGAG 44173 32 100.0 34 ................................ AGTTAATCGAAGAACAGGCTTCAAAATCTCACGG 44107 32 100.0 35 ................................ AACAGGCGCGGCCTGTGCTTGTTTCGGCTGTTCCT 44040 32 100.0 34 ................................ TTTGTGGTCGGCAAGAACGCAAAAGGTCAGATTT 43974 32 100.0 35 ................................ GGCTCCACTATCAGAATGTCGCCACGTTTTATCCC 43907 32 100.0 34 ................................ AAGATAACGGTCGGCTGAAATGACTTTGTCTTCT 43841 32 100.0 35 ................................ CTAACGTACTTGGCAGGGATTTGGTTTTAAGTGAG 43774 32 100.0 36 ................................ CGCCCGATCTAGCCCAGCGGTCATACCAAACCGCCA 43706 32 100.0 34 ................................ AATCTTTTGTCAGTACGAAAGCCCCATGTAACAT 43640 32 100.0 36 ................................ AGATCGAAGATCAAAATAAAGCGTATGGAGCAAAAT 43572 32 100.0 33 ................................ ATCGTCCCAGCGCATATCCTGCGGCAGATGTAC 43507 32 93.8 35 ...........CG................... ACGCCGAACGATTCGACAACAAATGTGACCCCACG 43440 32 93.8 34 ...........CG................... TTGTAATGTGGGCCGCCAACTTGCGTATCAAGCG 43374 32 90.6 35 ...........CGA.................. TCTAGCAACTACGAACTCTATGACGACCTATTCCG 43307 32 81.2 0 T...........G..T......A....C...T | ========== ====== ====== ====== ================================ ===================================== ================== 85 32 99.5 35 CCAGCCGCCTTTAGGCGGCTGTGTGTTGAAAC # Left flank : GCACATGGGAATACAAAATGCTGATGCTGATTACTTACGATATTTCGCTGGAAGACACAGAAGGACAGGCAAGACTGCGGCGCGTGGCAAAATTGTGTTTGGACTACGGCGTGCGCGTGCAATATTCGGTGTTCGAATGTGACATCGCTCCCGACCAGTGGGTTGTTTTAAAAGACAAACTTTTGAAAACCTACAACCCTGAAACCGACAGCCTGCGCTTTTACCATCTGGGTAGCAAATGGCGGCGCAAAGTGGAACACCATGGCGCGAAGCCGGCGGTGGATGTGTTTAAGGATACGTTGATTGTGTGAATCGCCAACCTGAGGTTCTCATGAAAATGCGGCAGGGTTGGCGAACTTGGATTGTTCTTTAACAATCAGGATATTGCGAATGCAGGTGTAACAGAAAAGGCTGTGTTATACTCGCGTTCACGCTTTTCTCGGGAGCTTAGCGAAATCGGGGCTGTGAAACCTGACAGAGCAAGGCTTTTGAGAGGGGCT # Right flank : ATCGTCCAAGCAGGCTACTCTTCTTCGGTGCGCAGGAAATTGCCTGCCAGACGGGACGGCTTCATGACTTAGGGAAACATTCGAAAGCCTTTAACCGCCGGTTGTATGGTGGCTCTTCAGGCGATCATGCTACCGCCGGAGCGAAAATTGCAAAAATGCTTGCTTTAGAGTGGAGGTCAAAGTATAACCTGTTGTTATCTCACTTAGGCTAGATAACTTTAATTAATGAATTAAAAGGCAAAAATAATGGAAAATAAACAAACCAATTCAACCATCAAATCTCGTGCGGCGGTGGCATTCGCCCCAAATCAACCCTTACAAATTGTGGAAATCGACGTAGAAATGCCGCGTAAAGGTGAGGTGTTAATTCGTAACACTCACACGGGCGTGTGCCATACTGATGCATTTACGTTATCAGGAAGCGATCCTGAAGGAGTATTTCCTGTGGTGCTTGGGCATGAAGGTGCGGGTGTAGTTGTTGCTGTGGGCGAAGGTGTGTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCCGCCTTTAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CCAGCCGCCTTTAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //