Array 1 113-594 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLSD01000327.1 Candidatus Hakubanella thermoalkaliphilus strain S47 HKBW3S47_000000000327, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 113 37 100.0 40 ..................................... TTAGCCGGGATGTTCATTAGTTTCCCGGTCAGCTCTTTGA 190 37 100.0 38 ..................................... GGGTTTAAAAATTATTTCAATCACCTTTCTCACCTCCG 265 37 100.0 35 ..................................... TATCCTCGCAGACATATCCCGGATCCTTGCTCTCT 337 37 100.0 39 ..................................... TAAAGAAAATCTTCATCCTCGTAGAGTTCGTAGCCGCCC 413 37 100.0 34 ..................................... ATGCATCTCGGGCTCCCCTCCTTAACCTTATGGG 484 37 100.0 37 ..................................... ACCACCTCGACCTCTCGGGGGGTCAGGACGACGCCCC 558 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 7 37 100.0 37 ATGAGAAAGGAGACCGATACCTAAGAGGGATTGAAAC # Left flank : GCAAATAGTATAGCGTGAACACCAGAAATGATCAAGTTATTTTATGACAATTCCTAAGAGGGATTGAAACGGTAGTCCTCTGGATTAAATCCGTTTAACTCAAAATGGATATA # Right flank : TTATTCTGGTTTTCTTGCAGGACAAGATCTTTCAGCAAAAATAGTCCTCTGGAAAGATGCCGAAATTTATAAGAAAGAGGCAAAGAGTTGAAATAGTCAATTGGGTGCCAAGACATGAATGATAGTAAATATCAGAAAAATCTAGAGAGTTTACCAAAACTTTGGGGGTGCCCAGCGAGGAGACGTTGACATGTTGGGAAGCTTTGTGGTCCGGGTGCGGCCGATGAAAAGCGTCTGTTACCAGTATTCCACAGGCAGACTTTTGCATGGTCTTTTTCTGCATCTTGTAGAGAGAGTAAATCCCCCTCTGGCTCGGGAACTCCATGAGGCTAAAGGGCAAAAGCCATTTACTGTCTCTCCTCTGTTCGGGCATTTCCGTACGGAATCCGGGACAAAGAAGGCGGTGGCGGAAGAGGAATACTGGTTCCGTTTCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGAGAAAGGAGACCGATACCTAAGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 2402-627 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLSD01000048.1 Candidatus Hakubanella thermoalkaliphilus strain S47 HKBW3S47_000000000048, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 2401 36 100.0 40 .................................... ATATCTTCCCAGCTTGGGATCAAAGACCCCAACCACCTCA 2325 36 100.0 38 .................................... GGTTTTTGCTCAACCTCGACATTTAAGAATAGCTTTTA 2251 36 100.0 41 .................................... ATTACTTGATGCCCACAGCGGAGGGAGAAGACCTCGCCGAA 2174 36 100.0 40 .................................... CAAACAGTACGCTCCACCTAGCTCTGCGACACTCTTCACA 2098 36 100.0 41 .................................... CTTGAATAAAAATTGTCTCTTGGCTGTTTCAAAAGTGGTCA 2021 36 100.0 37 .................................... CTTACATTGAATTCGGAGAGGCTTCCGCCTCGGATGA 1948 36 100.0 38 .................................... CTGACCAAAGCAGGAGTTATCAGGTCGGCCTGCACTCA 1874 36 100.0 40 .................................... CCGATGATATAGCCGTCTGGCCAGTCTTTTTCTCTTGACA 1798 36 100.0 43 .................................... ATGCCACCTGTCTACCGCACTTGCGGCAGACGACTTTCACCAA 1719 36 97.2 40 ..................A................. AGTCAAGTCCCACAGAGCCATGTGAGTATAGATATGTACG 1643 36 97.2 41 .............T...................... GGTCAGCCGCCGGTTTTTTAACGAGGTACTCCTAGGAAGAG 1566 36 97.2 38 .............T...................... CTTTCTGCCAACTCAATTGCTTTCCCCTTGCTCACCCG 1492 36 94.4 38 .........G...T...................... GGGGATAGACCGGGACCAGGTGGCCCTGGAAGCAGCCG 1418 36 97.2 42 .............T...................... CACTACAGAGATAGAGATTTCCGTCCGCCGTCATGTAGAGCG 1340 36 97.2 42 .............T...................... AAAAAGGGACAAAACACCTTTTTCCGGCGGTGGTAATTATCG 1262 36 97.2 39 .............T...................... GCCCAAGTGGGCGAAGCCAGTGATCCTCTCAAGTTTTTG 1187 36 97.2 40 .............T...................... TTTAGTTTGCTGTCTATAAAGCTCAAAGCATCTCGGGCAG 1111 36 97.2 37 .............T...................... CAAATAATCGTACCTTTTCCACCCCGATCTTTTCACG 1038 36 100.0 38 .................................... AGTTTTTGAATAAGCTCTTTGGTATTCATTTTGTCACA 964 36 100.0 38 .................................... AGGTACAGTATCTGGTGCCAAGGCATTATCTTTTCCTA 890 36 100.0 42 .................................... AGCATATTGAGGATGATCGTCATGAGCAAGACCTAGAAGACA 812 36 100.0 36 .................................... GTTATTCGAGAGACGTTATAGAGAGTGGGCACTGAG 740 36 97.2 42 .............T...................... TCTGGATTCCAGAGCGGGTGATAGAGGTCGCAAACCGAACCG 662 36 75.0 0 .........CT..A.G.G.....C..A......G.T | ========== ====== ====== ====== ==================================== =========================================== ================== 24 36 97.7 40 TGAGAAAGGAGACCGATACCTAAGAGGGATTGAAAC # Left flank : CTTATGACTAATGTAGGGCCGGTTGCCCTGGAAATATATCCTGGCACCCGAATCTGCCAACTTGTTATCCAAGAAACTGTTGGAGAAGCAGTTTATGAGGGTAGATTCAAAGGGTATAAAGCTGGCCATTGAAGATGTCTTTTGTTTTCTTAGCAAGAGTCTCATCTACGAGAAGGAGGCTTACCGGATAGTGGCTGAGGGAGAAGAAATCGAAGATCCGGACAACAGTCCGGAGCTCCTTTGGCACATAAAGAATATATGCAGACTCTCTCAATTTTATTCGCATATTTTTCGTCATCTTTCGGGCTTCTTGCCAATTTACAAAACACCTGGTCAACGCGGTAGATGCCCGCAAGATGATAATTCCTGGTAGGAGTACATTTGGCAGCAGAGAGGGGGTGTAAAAATCGATGCTGTGCTACATAAGTTACAATATTTCAGGCACATGCCCGAAAATAATGAATAAAAACCTATTCAAAGCCTATTATATTGGGCTGCTA # Right flank : CTTCTAAAGGACGGTTGGAATGATTAATGATTTTATAGTGATTATCTTCTTCCTTGGTCTTTTGCTGAATCTAGTAATGAGGGGATATATTTATCCTTATTTCGCTGTTCTTGCTTTACTTTTACTTATCTCTTTCAGAGTAACAGCAAGGTTACTGGGCGGAGGCTTGGGTCACCTTATCCGCGTCTCTTTTACCATCGGCTTACCTCTTCTTTCCCTGGCTATCTTGGCAATCAGATACGGCCAGGGTGACTTAAGACAAACATGGCTGGTACTTGGTTTGTTAACCGCCTTATTTTTGAGCATTTTAGGAGTTTACGTTATGATCTGGGGCGGATTTTCTTCTCCTCATGGCATCCTTTGGAACTTTCCTGCACTGCTCAGCGTCATGGTTTTTATTTTAGACCTGGCTTTGGGAAGGTATATCCCCCTTTCCTGGGCAGCAATAGCTATTGTGTTGCTGGTAATCTTGAGAGGTATAGGGAATCTCTTTGGGGGCA # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:0, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGAGAAAGGAGACCGATACCTAAGAGGGATTGAAAC # Alternate repeat : TGAGAAAGGAGACTGATACCTAAGAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 19-1050 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLSD01000279.1 Candidatus Hakubanella thermoalkaliphilus strain S47 HKBW3S47_000000000279, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 19 37 100.0 37 ..................................... GGGTGGGGCAATTTGAGTATGACAGTATCCCAGGTAG 93 37 100.0 39 ..................................... TTCAGTAATCCACTTTTTTCTATTTCGGAAATCACGAAG 169 37 100.0 39 ..................................... AGTTCTCTTCTGTTACACGAGACAATTCGTTCTTGCTCC 245 37 97.3 40 .........T........................... CAACTTTCCAAGATTCAATCGCCAAGAACTACCAGAGGAC 322 37 100.0 40 ..................................... CAATCTCAATTATCTCAATAAGAACTTGGATCTGATCACC 399 37 100.0 43 ..................................... TCCCAGTAGATCCGTGGATCATCAGGATTCGCGCGATATTTCA 479 37 100.0 35 ..................................... ATCAGATACCGGAGATACTGGTTGCGGTTGCGGCT 551 37 100.0 38 ..................................... GCTCTCACCTTGGGAACATCAGCCTCAGGGATGTCTAC 626 37 100.0 43 ..................................... ACAAAATAATATCGCCCCCCCTTACCCTATTTACAACGTAGTC 706 37 100.0 38 ..................................... CCTGTTATCTTATCTCTCCTTATTTGGGCTTTTAGAAT 781 37 97.3 43 .............T....................... AGTACGGCTTCCTGAACCCGCGGACCACCGCGATGGGCCACTC 861 37 97.3 40 .............T....................... TTCACCGTGCCGGGCAATGATCGGTGCCAGCGAGGCTACT 938 37 100.0 39 ..................................... TCTACAGTCCAGAGGGCTGTAGTATAGCCAAGTTCTTGG 1014 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 14 37 99.4 40 ATGAGAAAGGAGACCGATACCTAAGAGGGATTGAAAC # Left flank : CTATTATATTGGGCTGCTA # Right flank : TTATTCTGCTTTTCTTGCAGGGCAAGATCTTCAGCAAAAATAGTCCTCTGGAAAGATGCCGAAATTCATGAAAAAGAGGCAAAGAGGGGAAACAGGAAATTGGGTGCCAAGACATGAATGATAGTAAATATCAGAAAAATCTAGAGAGTTTACCAAAATTTTGAGCGTGCCCAGCGAGGAGACGTTGACATGTTGGGAAGCTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGAGAAAGGAGACCGATACCTAAGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : NA // Array 1 2108-1468 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLSD01000084.1 Candidatus Hakubanella thermoalkaliphilus strain S47 HKBW3S47_000000000084, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 2107 37 100.0 39 ..................................... CTCTCAAGCTGCTCCATTACCGCTAACAGCTCTTCACAC 2031 37 100.0 37 ..................................... CTCGTTTCACGAACTCCGGGAAACTATTTTATTATTT 1957 37 97.3 39 G.................................... CTTACACTTGGGACAGATGCGGACTTCTTCTTGGTGTGT 1881 37 97.3 38 G.................................... GGAGGCTAACCATGCCTAATAGCTATATGGGTCAAACC 1806 37 100.0 40 ..................................... AGTGCGAAAGAAGGGTTGTAAGCGTAACGGGTTCGAGCCC 1729 37 100.0 42 ..................................... AGTTGTTGTAGGCAAACAGCTTCCCTACGACAGGGCGGACGG 1650 37 100.0 35 ..................................... TGGTTATTCATGGAGTACAGCCTCCCGTCATACTC 1578 37 100.0 37 ..................................... CGGATGAGCGCCTCCCCCAGCGGGTCTTTTAGATTGG 1504 37 94.6 0 G...........................A........ | ========== ====== ====== ====== ===================================== ========================================== ================== 9 37 98.8 38 ATGAGAAAGGAGACCGATACCTAAGAGGGATTGAAAC # Left flank : GAGAAAGAGCTCGAGTCTTTATAACGTTGAGGTGACCAGGGATATAGGATGAGGCAAGAATCTTGATATTAGAAAGGAAGGTAGTAAATTAAAGATGCCAGAACTAATCAAAGATGCAAAGGAGGTTTATGAGAATTTGATGGTTGGCTTTGGTTGGGTTGGAATAGAAAGAATAAAGGTTCTTCTCCAAAAATAGTGGGTAAGAACCAGAATAGATGCGGACAACAATCTGGAGTTCCTTTGACACATAAAAGAATATATGCAAACTTTCTGAATTTTATCTGTATATTTCTCGTCGCCTTGCGGGCTTCTTGCCAATTTACAAAACACCTGGTCAACGCGGTAGATGCCCGCAGGATCATAATGCCTGATAGGAGTACATTTGGCAGTACAGAGAGGAGCAAAAACCCGATGTTGTGCCACATAAGTTACAATATTTCAGGCACATGCCCGAAAATAATGAATAAAAACCTGTTCCAAGCCTATTATATTGGGCTGCT # Right flank : TTATTCTGCTTTTCTTGCAGGACAAGATCTTTCAGCAAAAATAGCCCTCTGGAAAGATGCGGAAATTCATGAGAGAGAGGCAAAGAGGGGAAACAGGAAATTGGATGCCAAGACATGAATGATAGTAAATATCACAAAAACCTACAGAGGTTACCAAAATTTTGAGCGTGCCCAGCGAGGAGACGTTGACATGTTGGGAAGCTTTGTGGTCCGGGTGCGGCCAACGAAAAGCGTCTGTTATCAGTATTCCACAGGCAGACCTCTGCATGGTCTCTTTTTGCATCTTATAGAGAGAGTAAAATCGTCCTCTGGCTCGGGAACTTCATGATGCTAAAGGGCAAAAACCATTTACCGTCTCTCCCCTGTTTGGGCATTTCCTGACCGAATCAGGGGCAAAAAGGGCGGTAGAGGAAGAGGAGTATTGGTTCCGATTTACAGCACTAACCGAAGAGTGTTGTGAGGCCTTGGTGAGGGTTTTCTATGGAGAGGCTATTGCCAAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGAGAAAGGAGACCGATACCTAAGAGGGATTGAAAC # Alternate repeat : GTGAGAAAGGAGACCGATACCTAAGAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //