Array 1 879760-879190 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP023055.1 Thaumasiovibrio subtropicus strain C4V358 chromosome 2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 879759 28 100.0 32 ............................ TTGAAATTACCAATTCCGGACTTTACACTTTC 879699 28 100.0 32 ............................ ATAGAAAGGGCAATCGTCATACTGTCCTTCAT 879639 28 100.0 32 ............................ TACAGAATGACACTGCAAATAACGCGACTAAC 879579 28 100.0 32 ............................ TTGACCTGTAATACCACCGCTTACGTATGGAC 879519 28 100.0 32 ............................ TTTGAGAAACGGATCTATTTAATAACTCGCTA 879459 28 100.0 32 ............................ AAGATTTGCACGATATGTCATGCAGGCTTTGG 879399 28 100.0 32 ............................ AATCCGTATTCTTTTAAGAAGAAGCCAAAATT 879339 28 100.0 32 ............................ TTCGATTTTCAAATATAACCACACTTTAAAAA 879279 28 100.0 32 ............................ CGAAAATTCGATAAAAACTGTGTCATTGTTAC 879219 28 96.4 0 ........................A... | TA [879197] ========== ====== ====== ====== ============================ ================================ ================== 10 28 99.6 32 CTTCACTGCCGCACAGGCAGCTAAGAAA # Left flank : AACCAATTCATGGCATTGCCTTGGTTAAAAGGGCTGGGTGATTACACTGAACTCAGCCCAACCACCGCCGTGCCAACCGAAGTAAAAGGCTACCGAAATGTCTATCGTGTGCAGAAAAAATCGGTTCACAATCGACGTAAACGTTCTATCGCCAAAGGTTGGCTCACTGAGGAAGAGGCGTTGCATCGTATCCCTGACAGTGCAGAAGCAACACTCAAACTGCCGTTCTTGCAATTCAAAAGCTTATCGAGTCAGCAAATGATGCGGGTCTATATTGGGCTTGGTGAACTTCAGCCTCACCCAGCACAAGGCACACTTAACAGCTATGGGCTAAGTAAAACCCAAACGGTGCCTTGGTTCTAACCTTCTTAACCCTTTTTTTAGGAGTGTCTGTAAGCTTTTGATTTTTAGAAATCCTTACGGCAACCTGAAAAAAGGGTTTTCTCACGATTTTCACAAAAAGCTCTTTCACAATATGATCTTAGTGCGTATTCTTTCCA # Right flank : GGTGATAAGCCGAACGCTTATCACCTTTTTTCTTTCTAACTCTTTCGCCAACGCGCAGGAGCCACTAATGATTCGGTCCGTGTCGTCGCCAACGCTCGATAACCGTATTGGGTTTAACGATTTGCGGATCTTTTACTGCATCTTCGTACATTAATGATTCGGTGGTTTCGAGTTCATCTTCAAACGGTGTTTCATCGCGCTTTCTTTCCATTAGAATACCCGCAGCAGTGAGGGCCTCTTGGGTCACGGCAAAATCTTGTGCTTTGAGCTGCATTCTTCCGCCAAAATAGAAACCGACGATCACGCTAAGCAAGGCCCAGTAGCCTGCGGGCATAGCAGTATATGCCTGTGCAATCTTTAAGAAGTGATCTGGGTACATTGGCGCAACGATGAAAAAACCCAAGATAGAAAATGTCATCAATGGTCGCGGTAAACGGTTCAATCCATCAACAAATGCATCCCACCCAGTGCGGTTTTGTCTTGCATGAAACTCTGTCGCA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGCACAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGCCCAGGCAGCTAAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 890273-889105 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP023055.1 Thaumasiovibrio subtropicus strain C4V358 chromosome 2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 890272 28 100.0 32 ............................ TACTGGAAAAACAAGCTACTACTACTGTGATG 890212 28 100.0 32 ............................ GTGCATTGTTAGAAGACCGCACGCTCGCTGTT 890152 28 100.0 32 ............................ TTACAGCTAAAGGCGTGAGCGACATTTGCCAG 890092 28 100.0 32 ............................ CGTCAAAATCAAAGCTAAGCGCGCATAGCTCA 890032 28 100.0 32 ............................ CTAATACGGGCGAAATTACACAAAAAGGTACG 889972 28 100.0 32 ............................ AGAAATTTTAGGTACAGAAGAAACAGAACCAG 889912 28 100.0 32 ............................ AACATCTAAGAAAAGCCCTGATATTTATCGAC 889852 28 100.0 32 ............................ TGAGATATTGCATCATTAAATTCCTGCTCCTT 889792 28 100.0 32 ............................ AAAAGGAAATATCGATTATGACAATGTTTCTC 889732 28 100.0 32 ............................ TGCTAAGTATTTCCTCGAAAACTGGGTGATGG 889672 28 100.0 32 ............................ CGACAGCCGCAACTGTCCTTAATAGGCGGCAT 889612 28 100.0 32 ............................ TGTTTCAGCATGCAGCTATAGGCGCGCTAGGA 889552 28 96.4 32 ......C..................... TTGCCGTTAAATTTGTAATACATAATGGCTGT 889492 28 100.0 32 ............................ TAACAGAAATCCGCAAGTCAGTAGAGAAAGCT 889432 28 100.0 32 ............................ TGGTAGGCCTGAGTAAGTATCTCGATATACGA 889372 28 100.0 32 ............................ CACTTAATAGCCGCAGCGCCTGAGATGTATCA 889312 28 100.0 32 ............................ CAGAGGCAAACCCACCCAGCCAGAGCAGAAAG 889252 28 100.0 32 ............................ TGAAGGGGTGTTTGCGGGCGTCATCGGTGGCT 889192 28 100.0 32 ............................ TACAGACAGCGCGTCTGATGGTATCACATCAC 889132 28 75.0 0 .....................CTCTTCC | ========== ====== ====== ====== ============================ ================================ ================== 20 28 98.6 32 CTTCACTGCCGCACAGGCAGCTAAGAAA # Left flank : CAACACCTGCTTTGCGCCGCGCTGGTGGGGACGGTATTAATGTTGGTGTCTGACTGGCTTGGCCGTCAATGGCTCTATCCTGCCGAGATTCCCGCAGGAATGGTCGCTGCCATCATTGGTGGTATGTACTTACTGTGGGGGCTAAAGCGGCTTTGAAGCTCTAGTCGAAGAAATCAAAAAGAAGTTACAAATATGGTGAGCCTTATAAACTCGCCCCTTGGGAAGTGACTATCGCCCGCAATTGCGGGCGAATTTCTAGCGTTGCTTTTCAAGGTTTCAATCACTTTTCATGCCAAAGTGAGAATTCTCTTTCAACACCATCATCGCATTATCAGTATCATAGCTCTTCCGGATACGTATACCGCGAGCCAACCCTTTTTTATTTGCCGCTCTAACCTACTGATTCTTGGGCTCGGTTTTGCCACCCCAAAAAAAGGGTTCTCGGCCGTTATTGTGATGTATGCTCTTTAACAACAAGCAGATAGGTTTAATTATGTCCA # Right flank : TATCTGCTTTGTTAACTCAACGGACTTCTATCAACCAAGTTGTCTCACTGTCACGACATCTACAAGCGCTTGTTTTGTCAAGACGATAAATGTGACCCGAGATGCATAACAGCTTGCGCTAAACCCGTAAGATAAACTGACATGGAGATTTAAACAGTCAAGGACGTCGATGGCACCCCACAAGCATCAAGAGAAGCACTTTTTCTACATCGAAATGGTCGGTTACTGGCAAGTGCACCTTGCGATTAATGAGCTCAGTGATACGTTCGCGGTTTCTCGACAACGTGGTAGTGAGATATTCAAGCATTATCGCGAAGCCCATCCTGATAATTTTTATCAAGCGGGTAATCGCTGGTTCGCCAATAGTGAGTTTAGTTGCCATTACATTAACAAAAGCCCCCACCAGTACCTCAACTGGCTGCTCGGCAATACCGCCTTCTCTGCCAACACCTATCGACCACAACATCCGGCACGGAATATAGACGCCGACATTCTTCGTG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGCACAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGCCCAGGCAGCTAAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //