Array 1 3199-2930 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDJF01000026.1 Vibrio injenensis strain M12-1144, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3198 28 100.0 32 ............................ AAATCGATACCAACGCTCGACAAGCCTGCAGC 3138 28 100.0 32 ............................ AATTATGCGCTAACAGCAACGCCAGCACGAAC 3078 28 100.0 32 ............................ ATGTTTATAATGAGTTTCTTTTTCGTATTGAT 3018 28 100.0 32 ............................ ATGATTAGGTTACGAACCTCACCGGAGACGGT 2958 28 100.0 0 ............................ | A [2933] ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGTTATTATCCATACAAACAATTCAAGCAGACCCTCAACGCGTGGCACTTTTGTTTTGCGTTGAGTTTGGTGATTACGGTGTTGTGCGGGAAGTTGGCAGTAGCGTTTCGGGCTACTTAATTGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAATTTTAAGTTATTGATTTATATTAATAATAAATCGAGTGAAAAATAAAAGGTTATTTTGAAAAATTTGATGTAATTACCATTATTAACAATAGGTTACTGCTAAAGTTTCAT # Right flank : TTGGTAATTTTGGCATTTGGGATCGGCCAGTTAACAAGGCGTTAAAGAGGGATTCGCAACGCGCGGCATTTTCTTTATGCATTGATTTTATTGGTTTTTAGTGCAATGCGGTGAGTTGGTCGTTGCGTTGCTCACCCCTTAACGCGGCGTTAACTGGCAATAAAATTACCCATCTTTTTTTGTTGAATTTTAAGTCATTGATTTATATTAATAATAAATCGAGTTAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTTTTATTAACAATAGGTTACTGATACAGTTTCATAGTTCACTGCCGCACAGGCAGCTTAGAAATAGCAAGCTCCCAACTACGCCGCCAAGCAATTGTTCACTGCCGCACAGGCAGCTTAAAAAATGGGTAATTTTGGCATTTGTGATCGGCCAGTTAACAAAGCGTTCAAGAGGGATTCGCAACGCGTAGCACTTTCGTTATGCTTTGATTTTATTAGTTTTCAGTGCAATGCGGT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 94657-93368 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDJF01000016.1 Vibrio injenensis strain M12-1144, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 94656 28 100.0 32 ............................ CATTCGTGAAAGTTGAAGATGATCAACTGTAA 94596 28 100.0 32 ............................ GCCAGAGTTACCACCGGAACCATCACCACCAT 94536 28 100.0 32 ............................ TGTCCTGTCGGTAAAATTAACTCGTTATTTAC 94476 28 100.0 32 ............................ TAGCATTTGCATAGAGCCGTTGTAACCCTGAA 94416 28 100.0 32 ............................ CGCCTCCGCTGGCGTCCTTGTTGCTAACAACT 94356 28 100.0 32 ............................ GTAAAGAATCACACTGAGTCATTTTATTATAA 94296 28 100.0 32 ............................ AGACTGCCAAGCATGCAGATAAAATTGGCATT 94236 28 100.0 32 ............................ TGATTTATGAGCGATGCAAAGCCGTAAAGAAT 94176 28 100.0 32 ............................ TTCTAACTACGATCCTGAGAGTCGGACTTACA 94116 28 100.0 32 ............................ ACAACGGAAAACAGCGCTCCCACAAACGGTAT 94056 28 100.0 32 ............................ TGACGTTGGTTTTAAGCGAGAAAAAGCCCTTT 93996 28 100.0 32 ............................ TTATCGCCCTTTGTCTGAATTTATTAATTATT 93936 28 100.0 32 ............................ AACTCTTGAAACCATATCCGCGCAATATGAAC 93876 28 100.0 32 ............................ GGTAGACAACTTCGCTGAAGAATACGCCCTAT 93816 28 100.0 33 ............................ CTACGCTGCAAGCAGCTACCCGCTAGACACTCA 93755 28 100.0 32 ............................ TTAGTGAAAGATTGACAGTGGCGATCAGCAAT 93695 28 100.0 32 ............................ TTGAAAGGATTGGCAGGGGGTTTTGCTGCATT 93635 28 100.0 32 ............................ TACCGAGGCGGGTATGTATGACGGCATAGCAA 93575 28 100.0 32 ............................ TGCTAGCTGAGCATGGCTTATACGGTGATATG 93515 28 100.0 32 ............................ ATGGTGGGGGTGACGTGGAAAGAGTCGCCAAT 93455 28 100.0 32 ............................ TGTTTGCACTCGTGCGGGTGAGTCAGCAATAG 93395 28 96.4 0 .................T.......... | ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GAGGTAACTTACGTCAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCCGGTAAACCACTGGTGGAATGTCTAGCGGATTTGCAACAAAGCAAGCCGACAGCCTTGTGCTCTTTGCCGTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGCTCACCAGAAAAAAACAGCAAGTTTCCGCTGTTTATTGAGATGCAGCCGCAAAGCACATCTCAAGATGGGAGCTTCGATTGCTATGGTTTAAGTAGCAAAGCGAATGGACAATCAGCATTGGCTACCGTGCCGCACTTTTAAATTGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATAAGCTTTAAATACAATAAGTTACAGATGGTGGTTTTTGACAAGGTAAAAAGATGATTTTTATCCTAACTGACTGTTGTAACTTATTTTTATTGATTTATTCTATT # Right flank : ACGCTCGGTACTGATTGCGTCTGGTAAGGCGCAAGAATTTTGGAGATGTGTCAGTGATTCAGCGTTATAAATATTTCATAGTTTTATTGGTTATATTTTTGTTTGGGTGCAATTCATCAGTTCAGCAGCTAAGCCAAGACTGGGAATCAGTCTACAACCATTGTACTGACCTAGAGCTTGGTAACGAGGCAGACTTTGTGACTACATCTTGGTTTGATGAACTTGATCTTGAAACTCAAAAGCAGGTCGCTTTGTACGTTTACCAAACCAATTTTTACGCTTGCCACTCTCAGAAAACTGTTGATTTCAGATCACAGTTAGAAAAGCTTGGGGCGAAAGAAAAGTTAAAATACTATCAAGGTATAGGTGTATTTGATACACCAAACACAAGCTTGGTTCAGGGGGTGGATAAAGATGTCTTGAATAAGTTAATTGAAGCGCAACCTCAAAATCTAAACTTACGACATATTGGGATTCAATTAGGTTTCCGTAATTAGAAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 414358-414964 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDJF01000006.1 Vibrio injenensis strain M12-1144, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 414358 35 100.0 33 ................................... TTAAAGATCTCTTCTTTATTCATGGAACCATTA 414426 35 100.0 35 ................................... TACAGCGCTCTATTAGCCCATCCGATTGATTACAA 414496 35 100.0 41 ................................... TCGTTTATGTTGTCGTCAGTCAGAGTAATGAGTTTTTTGTT 414572 35 100.0 38 ................................... AAAAGATCCCACGCTTGAGGATTAGCTTGAGTCATGTG 414645 35 100.0 38 ................................... TTTAAATCCTCATCTCTAACTATTGTATCTGGATATGG 414718 35 100.0 35 ................................... TACCCAGTCTTGTTATGAAACGGCATTGAGTTTGA 414788 35 100.0 36 ................................... CCTCAAAACCTGTTTCCGTTAACCCATTCATTAGAA 414859 35 97.1 36 .............T..................... GAGAAAACACACCGTGATCAGGCCGAAAGCGATTAG 414930 35 88.6 0 ...............................GCTA | ========== ====== ====== ====== =================================== ========================================= ================== 9 35 98.4 37 GCTTCATTAGATAAGGTCGTTCAGACCGTTGAGAC # Left flank : ATTAGAGAAGTGAAAATTGCACTGAAACTAGGCAGTACACCCAAATTTTGGAGGCCTTAAAGCATGAAAGTCTACTTGGCGTGTTTTGATGTTGACGATGATAAAAAACGACGCAGATTGAGCAAGTTACTGCTCTCTTATGGCGAAAGGGTACAGTTTTCCGTTTTTGAAATTACGCTTAAAAACGAAGCAAGTTTGAAAAAGTTGCTTCAGCGTTGCAAACACCATGTTGATGAGGGAGACAGTTTACGCTTTTATGCTTTACCACTGAACGCCCGAGAAGGTTCGTTTGATATCGATGGCGAGCCCATAGCACGGTTCCCACAGGCCGAAATTCTCTGAAGGTTTGCTCTTTAACAATTTGCCCTTTCATTCACCGAAAAACTTGGCTAAGCTAAGGCGTCTAAATTTGGTGAAGCGAACCCTGACCTGTGGATAACTTTAGGCTAATCAAAAGTGCTCTTTATCTTATTGAATCCGAAACTCAATTTATGGGTAGT # Right flank : ATTTAGGTAGGGACTAACATTCGGTATTGACAGCTAACCTAGTTATACTTAAGGCAACAGCGATAACTTGGAAGTGGTATGCGTTTATTTTTGGATACAGAATTTACTGGTTTAAAGCAAGACGCTGAGCTACTCAGCCTTGCACTGGTCGATGAGCATGGCTGGGCTTTTTATGCAGAGTGCCAAGCAAGGCATGGAGCCCCCGTGGATAACTGGATTGCTGAGCATGTACTTGCTCATACTCGCTGGTTATCCTTACCTTGTTGCGCGCCAAGTGAGTGGTTGCAAGAGGGAGAGGTGCGGTATGGTTTCGATAGTGATGAAAATATCGCCCACCAGCTTAAGCACTGGTTAAGTCAATATGAACAAGTCGAGCTGTGGGCTGATTGCCCAGCTTACGATTGGGTGCTGTTTTGCCAGTTATTTGGGGGCTCGCCGTATTTACCTCGCCCTCTCTCTTATGTGGTGAATGATTTCGCTACCTTGCTGACTTTACAAGG # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCATTAGATAAGGTCGTTCAGACCGTTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.90,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //