Array 1 16055-17883 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQAO01000002.1 Pasteurella multocida subsp. multocida strain BUKK contig000002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 16055 28 100.0 32 ............................ TCTTTGTTGTTGTTAATTGTTGTTAACTGTGT 16115 28 100.0 32 ............................ AGTGACAGCCTACCATATCACGCTGGGTCACC 16175 28 100.0 32 ............................ ACATTAATAGGAAAATAAAAACATGAAACAAC 16235 28 100.0 32 ............................ AATCAAACTATTGAAACTTTGAGTTTTCAAAT 16295 28 100.0 32 ............................ TTTCCAATTCTTAGCGTTCTGTTTTGAGTACA 16355 28 100.0 32 ............................ TGTCTGTTATCGTTGGTGGGCTGAACAAGACA 16415 28 100.0 32 ............................ TATTGAGGTTTAATGTGGTCACTAAGTTATCA 16475 28 100.0 32 ............................ TGGGTTATCAACAAGGATATACTAGAGGTTAT 16535 28 100.0 32 ............................ TATTAGGGGTTTAACGTTATCGAATGATTAAT 16595 28 100.0 32 ............................ AAGATGCTCAGCGCTACCTTTAAACGAAATAT 16655 28 100.0 32 ............................ AAAAATATAAACGTTTAAGAGGTCTCTCTTAA 16715 28 100.0 32 ............................ TTAGGCAACATAAAGATAACTTAATGGTCTAA 16775 28 100.0 32 ............................ CATGGGGATTGACGATAGGTGGAACTTTGAGG 16835 28 100.0 32 ............................ GAAAGCCATACGTTTAATCAATGACTCAATCA 16895 28 100.0 32 ............................ ACAATTTACAACAACACAGTTAACAACAACCA 16955 28 100.0 32 ............................ GACAACAAGAGATTGCGTTGTTTAAGAGCTTT 17015 28 100.0 32 ............................ AGTTAACATAAAGATAACTTAAAGAGGCCTAA 17075 28 100.0 32 ............................ ACTTAGACGTTTTACCCCCAGTGTATAAACAT 17135 28 100.0 32 ............................ TCTTGGTTGTTGTAAATTGTGGTTGTTAAGTG 17195 28 100.0 32 ............................ TAATGACCACTAAAAAGGTAATTACCCATCAT 17255 28 100.0 32 ............................ TTTCCACCGACTTCTAAAAGTAAGCGAACTGT 17315 28 100.0 32 ............................ AGACGTGTATTAAACAGATAAAGACTAAGAAA 17375 28 100.0 32 ............................ AATTAATAGGAAAATAAAACATGAAGCAGCAC 17435 28 100.0 32 ............................ TAGCTACTTTCTATTAGTTGTCTTATAGCCAC 17495 28 100.0 32 ............................ ATAATGACCACTAAAAGACAACTATTTATCGA 17555 28 100.0 32 ............................ TTTCCCGCTAATAGGTTTACCGTAAACTAAAT 17615 28 100.0 32 ............................ TTTTATTTTACTACCTTGCACCAAGGTGTCAG 17675 28 100.0 33 ............................ AGTGTAGTGGCCACAACATCTAAACGGCTCATG 17736 28 100.0 32 ............................ ACTACAGGGCACCTGTTAAAAGCTGGAAACAG 17796 28 100.0 32 ............................ TGTTTGGTGGTTAATCATATTGTTTTGGTGTT 17856 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 31 28 99.9 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : AATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACTCCGTTGCCTACCGAGTACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGTCGCAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTTCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTAG # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGAGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGTTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 92208-93315 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQAO01000001.1 Pasteurella multocida subsp. multocida strain BUKK contig000001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 92208 28 100.0 32 ............................ AGTTAGGTTTGCTTAGAAGTGAGTATATTAAA 92268 28 100.0 32 ............................ GACCAAATCTTAGAAGATACTATCAAACCAGC 92328 28 100.0 32 ............................ TGTATACCGGGGGTAAGACGTCGAAATGGTAC 92388 28 100.0 32 ............................ TTTACCGTTGTTAGCGCCTAATTCTTGACCTA 92448 28 100.0 32 ............................ TCAAAGGAACCGTATGGGTTGTCTATGATAAT 92508 28 100.0 32 ............................ ACCTGTTAAGCCCCTGGATATCAACATCAATG 92568 28 100.0 32 ............................ TCATCGACCTCGAGGAAAAACATAAGGCAATC 92628 28 100.0 32 ............................ AGCTGGAGACCGCACCTTTTACACAACACCTG 92688 28 100.0 32 ............................ AGACGCGATTGTTCGAACAATATGTCGAGAAG 92748 28 100.0 32 ............................ ACGCAGAAGAAGCGGCTACCTTAATCTCTAAA 92808 28 100.0 32 ............................ AACAGAAAGACAACAACGTAGGAGAACATCAA 92868 28 100.0 32 ............................ AGGGACAACCTACCATATCACGCTGGGTCCCC 92928 28 100.0 32 ............................ AAAAGTGGAAGAAAGCAAAATCACAGCGACAC 92988 28 100.0 32 ............................ AAAAGTGGAAGAAAGCAAAATCACAGCGACAC 93048 28 100.0 32 ............................ TAGCTGTTTTGGTTGAGTTTTTTATCGGCTAC 93108 28 100.0 32 ............................ ATAGGGACGCTTGCGGTTTATGGATTTTTTAT 93168 28 100.0 32 ............................ AAGTTGTTATATTAAGCATGAAGAAATGAAAC 93228 28 96.4 32 ............G............... AGTCTGTTATTGATTTTCTCAAGCGTTATTTC C [93236] 93289 27 85.7 0 ....................-..TC..T | ========== ====== ====== ====== ============================ ================================ ================== 19 28 99.1 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : ATACAGCGCAGATACCTATTTACACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTCCGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACTTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGCTCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGGTTTAG # Right flank : TTGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCGTCAATCTTATCCATACTCTCAGCAACGAGATAATACTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGAGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAGGGCATCGTTTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 205177-205937 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQAO01000009.1 Pasteurella multocida subsp. multocida strain BUKK contig000009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 205177 36 80.6 30 ...A.TT..GTGG....................... ATACATGCTAATCAATTTGATAAGGCTGGA 205243 36 100.0 30 .................................... GGTAGATAAAAGTTAAATTCATTGAGTTTA 205309 36 100.0 30 .................................... TTTGCTTTCTTCGCAAATAACGCTTTGACT 205375 36 100.0 30 .................................... ACCAAGAGTTAACTTATAGATGACCAAGAG 205441 36 100.0 30 .................................... TCAAGTTGCCAATTACAGGGACCAAAACGG 205507 36 100.0 30 .................................... AATGGCTGTAGTACTTTATACCACCTCAGC 205573 36 100.0 30 .................................... AGGAAGGTAGGCACTTCGATGACCTCAGAG 205639 36 100.0 29 .................................... CAAGATATTGGCGTACGCGAGATTCGGCA 205704 36 100.0 30 .................................... CATTTCGTGAATAAATCTTTAGGTGCAATT 205770 36 100.0 30 .................................... GATAATGAGTCATTAAGGTTGTCTAAATTG 205836 36 100.0 30 .................................... CTCGACGAATTACGTAGTGATAGCCAATAT 205902 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 98.4 30 GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Left flank : GATGACCTTAAAAGGTTTACCCCTTGCCTATAATAAAGATATGCAAGAAGACAAAGAAGGGATTTTTGATGCCCTAGATACTTGGCAAGACTGTATCGACATGGCGGCTCTTGTGTTAGACGGCATTCAAGTCAATGTGGAACGTACCAAAGAAGCCGCTTTAAAAGGTTATTCCAATGCCACTGAACTGGCCGACTATTTGGTCGCCAAAGGCGTGCCATTCCGTGACTCTCACCATATTGTGGGCGAAACCGTTGTTTATGCTATCCAACAGCACAAAGCGCTTGAAGCACTCAGCGTTGCTGAATTTAAACAATTTAGTGATGTTGTCGAAGAAGATGTGTATCAGATCCTATCTCTGCAATCTTGTTTAGATAAACGCTGTGCCAAAGGTGGCGTATCACCACTTCGTGTTGCAGAAGCCATCGCTGAAGCGAAAGCAAGGTTGAGTTAATTCTCAAATGAAACGATTTTAATCAGCCACAAAGCGCAATAATACT # Right flank : TCTCGTGTCCCTTATCCCTTATGGCACAAGGGATAAGGGCATTTTTAATGCTCAAAAATTACTTGAATTCTCGATATTAAGCATTCTATTTTTAGAAAATTTTTCTTAAAAAGTCATTGATTTTGTCTGACTGGGATAACATCTGTTGTATGTTACTCCTGGTTCTGAGATGCGCTAGGCTAAAATAGAGAATAGTCTTTTTGTCTATTTTTATAGAATAGGTAAATAGTTTACTTAGAACAGCAACATTTGATTTGCGTTTACTTTTTTCTCTTGAAGTCTCAATCTCCCCAAGAGTATTTTCATTCCTGCAAATTGCTTTTCTGTCACTTCTAAACAGCGTATTGAACCTTCTTCTGGGAGATGATCACTGAGTCGTTTATTATGCTTTTGCATGGAGTCTCGACCTCGAATAATTCTAGCATATACAGAAAGTTGTAACATTTGATAACCATCTTTTAATAAAAATTGACGGAATTGATTTGCTGCTTTACGTTTTG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //