Array 1 53022-53316 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSVE01000003.1 Megamonas rupellensis strain OM02-7LB OM02-7LB.Scaf3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 53022 30 100.0 37 .............................. AACTTTGATATACTATTTGTAGAAATAAAATCAAGGC 53089 30 100.0 36 .............................. TACACTTTTACTAGCCAGAAATCATCTAATATAACA 53155 30 100.0 36 .............................. TTTATAATCGGAAATTATTCCACAAGCTAACTTGCG 53221 30 100.0 36 .............................. CCGTTTTCTCTGGTGAATGCTTCCTGAAGTGTGAAG 53287 30 90.0 0 .......................TA....A | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 98.0 36 GATAAATATCAACAGATACTGTACGAAAAC # Left flank : TGCTGTCAGCCCTTTAAATTCTCTAGTATTTATATTTGGACAAACTTCATAGAAAAATTCTGCCATATCCTCATCAATAGTTCTGATGGTCAAAGTATATATCTTGCCTTTTTTATAGATTTTATCTTTTTCCAATGGCGATAATAAATCATAGCAATAATTTTTATATGTATTTGTATTATGTAATTTTCCTAGATTTTCTTTTGCAAATAAGCTTTTATCAATAAATCTAGTCAACATGATTTGCACATCTTGTGCCATGATATCCTTTAATAAATATAATTTTATGCGTATTTGATAAACTTTCATCAAAATGCCCCTTTCTTTGAATTTACCAAGTGATATATTCATCTTTATGCAAAAATGCTGATATATCAATAATTATAACAAAAATTCGTCATTAAATTCTCAAAATCCTTTTCGCTGGTAAAAAATCCCTAAACCTTGATAAAATCACTATTTTCATATATAATATATTTCATAAACCTTAATCTTTAAGG # Right flank : AAGGCTTGTTATAGTTATTTTTCTATAACAAGCCTTTTTATTTTGCTTTAATTTAATTTTATCTGTATTGCTCCCATGCCTAGATGCGTATTTGCTCCTATTGATGTATACTGGGAAAATTCTGCCAGCATTAAGATTATTTTATTTGCCATTATATTATTTTTTAAACTAAACCTACATTTTCCTTGAAATGTAGGTCTTTTTTTGCCATTTATCAGCTGTGGTCTTAAAACGACTTCATAATCATCTAGTTGTATTTCTTGTGCTAAATTTTCAATTAAATCTTGTTCATACAATTTTTCATCAATGGCAAATAAATTCCAGATAGAAACTAAATTCATTATTATATCATGCGGTTGACAAATCATTTTGTCTTCTTCGCCAAACAATAAAGTCGGTGTCAAAAAGTTAAATTCAATATAGCTACTTTTCAATCTACGTGTAAAATATTTCGTTACTAATTGCTTATATGTAGCACTATGAATATAACTTTTCTTCTC # Questionable array : NO Score: 2.96 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAAATATCAACAGATACTGTACGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.50,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 16314-19192 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSVE01000032.1 Megamonas rupellensis strain OM02-7LB OM02-7LB.Scaf32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 16314 30 100.0 36 .............................. TCTGATGTAATATTATAGGACTGTAAAAAGCATTTG 16380 30 100.0 36 .............................. TCCGATAAATGGGAAGTTGGAAGCTGATATGCTTAT 16446 30 100.0 36 .............................. TCCGATAAATGGGAAGTTGGAAGCTGATATGCTTAT 16512 30 100.0 36 .............................. AGAGTAAAAGGTTTGAGTAATAGTCAGCTTCTTTTT 16578 30 100.0 36 .............................. TAATCCGGAATTTCACTTCCTAGATATGGATTTACA 16644 30 100.0 40 .............................. CCCAATACGATATTAAAACTCTGATTAGGCGTGTATTCAA 16714 30 100.0 36 .............................. TTTTTCGAGCTTCTTCCCTATCTGTTGGAAAATTAG 16780 30 100.0 34 .............................. TCTACATCAGCAAATTGCGGATATAGTGTCTTAA 16844 30 100.0 37 .............................. TGCATCCGATACGCATAAAATCTTTTATTTGCGTATC 16911 30 100.0 36 .............................. TTATCCCATATATTACCAATAACTTTTGCCATATCG 16977 30 100.0 36 .............................. TTGTTTGTTTTCCTCCTGTTTTCTGGTGCGTACTAA 17043 30 100.0 36 .............................. TGTTTATCGCCTCTTAAATCACTTGTTTTTAAACCT 17109 30 100.0 36 .............................. GCACAAAAATATTTTTTAGGATTTGACGGCAGTACA 17175 30 100.0 36 .............................. CTGTCTTGTTCTTCCATAGTGGTAAAAGATACCCAA 17241 30 100.0 36 .............................. TTATCTGGTTTTGGTTCTATATATGGGTCTAAATTG 17307 30 100.0 36 .............................. TCCGTTTGTTCTGTTTTGTCCTTACAAGGTTATTAT 17373 30 100.0 36 .............................. TTATAGATAGCTTTAAGTCCAAAGGTATACCTCTAG 17439 30 100.0 37 .............................. AGAGCAGGAAAGAGCTAAATTGGATGCCGAGTATGCA 17506 30 100.0 35 .............................. CAAATTATGTTTGGCAATTTAAAAATAGATATGAT 17571 30 100.0 36 .............................. TACAACTATGAATAGCTCTTTGTATTAAATCTTTAT 17637 30 100.0 36 .............................. TTGTATAATAATATTATATCATATGTGGCGATTTAT 17703 30 100.0 36 .............................. AGTTTTAGCGTATGATAATTTTCATTTTTAAGAGCG 17769 30 100.0 36 .............................. AAAGATATTAAGAATTTATATATAAATAAAGGGGTA 17835 30 100.0 36 .............................. AGGACAGTGGGACGTGGTGAACGTCCCATTTCCCAA 17901 30 100.0 36 .............................. GCAGAGAAAAATATGCAAATGGAAGAAAGTTTATTA 17967 30 100.0 38 .............................. AGATATCCCAGATTATAATATTTGCTGTGAGGATATAA 18035 30 100.0 38 .............................. AGATATCCCAGATTATAATATTTGCTGTGAGGATATAA 18103 30 100.0 37 .............................. TTTATATTCCTTTATTGTGTTTACTTTACCATTTGCA 18170 30 100.0 37 .............................. TAGTAACACCTCAACTAAATTATAATGTATCTTTTCA 18237 30 100.0 36 .............................. AGAAACTCAATAAAGTGTCTTTAAAAGATTTTTTTA 18303 30 100.0 36 .............................. TCTTCTAATATTAAATACATTCAATCACTCCATCCT 18369 30 100.0 35 .............................. CTGCCACAGCTTCTAGACAATATTTACAAATATTA 18434 30 100.0 37 .............................. CGCCGTTTTAAGAACATATCACCATTTTCAAATGCTC 18501 30 100.0 36 .............................. AAACTTAATGAAGATTTTCTTCTAATAGGTTTAATA 18567 30 100.0 36 .............................. ATAATTGTTTAACAAAAGCTTTCCAAATGTGATTCA 18633 30 100.0 36 .............................. TGGTCCCATAACTTCCAGATAAGATAAGACCTTCTC 18699 30 100.0 34 .............................. CTAAAATCATCACTATGTTTGTTTAGCTCCTGAA 18763 30 100.0 36 .............................. GCTTCTTTTTTGCTGTCAAACGTAATTCCGTTTATT 18829 30 100.0 36 .............................. AACAGAAAATGCAAATCTTAGAACTGCTCTTGCACA 18895 30 100.0 38 .............................. TGTGGAAACGCATGGCGGTTGGGGCAATGAGGTAACCG 18963 30 100.0 36 .............................. GACGTTGATCGTTGTCATTGGCGGAGTTAATTTGAG 19029 30 93.3 36 ...............TC............. TATCGAGATTAGTATAAGATTGTTTGCCTTCATCAA 19095 30 93.3 38 ...............TC............. TTGGCAATATAAAATAAAATCGCGATATCTCGTGTTAT 19163 30 80.0 0 .........G.............CGAA..A | ========== ====== ====== ====== ============================== ======================================== ================== 44 30 99.2 36 ATTTAACTTTAACAAGTGTTGTATTTGAAT # Left flank : TTATCCTCTTGCTAAAAAATATTTAAAAGGTTGCAGTGGTGTTATCACTTTCGTAATCAAAGGTGGTAAAGAAAACGCTGTCAAATTCATGGACTCCTTAAAATTAGCTTCTAATGAAGTTCATGTTGCCGATATTCGTACTTGTGTTCTTCACCCAGCAAGTGAAACACATCGTCAATTGACAGATGAACAACTCGAAGCTGCTGGTATCAATAGCGGTATGGTTCGTTTCTCTGTAGGACTTGAAGATATCAATGATATTTTAGATGACTTAAAACAAGCTTTTGCTAATGTAAAATAATTATTTAAAGGCATTTGTGTAAACAAGTGCCTTTTTTATTTTCCCAGCCATTTTTTAGTTTAAAACCTAAAAGCCTTATAAATAAAGGATTTATTAAAAATCATCCAAAATCCTAAATCGCTGGTAAAAACTCATATAAATATTGATATTTCAACCTTTATAAACTATAATTATTTATAAAAGTGTTAATTTTACTGGC # Right flank : TAAAAGCTGTAACAAAGAGAATGATATGCACCCAAAATATTGGACATATTAATTAAGCTACTAATT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAACTTTAACAAGTGTTGTATTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.10,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 1 9335-9060 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSVE01000019.1 Megamonas rupellensis strain OM02-7LB OM02-7LB.Scaf19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ========================================= ================== 9334 26 100.0 38 .......................... GTTTTTTTAATTTTTGCCTTAATTCTTCATCTTCTATT 9270 26 100.0 40 .......................... GTTGAGGTGTAGCAGTTGAAGGTGTAGCTGATGAACCTGT 9204 26 100.0 41 .......................... ACCCTTTTTGAAATATATATACCATTTACGTTTACTATTTC 9137 26 100.0 26 .......................... CGCCACATATCACCTTCACTACAGTG 9085 26 80.8 0 ......T.............AA.G.G | ========== ====== ====== ====== ========================== ========================================= ================== 5 26 96.2 36 GTTAAGCATTAACATTGTACGGTCTC # Left flank : TAATCGGTGGCAAAGAGGATATTATTACTTGTTATTTTGCAGATGAAGGCAGTAAGGAAAATTGCTATGATTCATATTATCCAAGTACAGATTTATTAAATAAACAGATAGAGAAGTGGCAAGATGAGAAAATAGATTTTTATGGAATTTATCATACACATTTTGCTGGTGATGATGGTTTATCTAGCAGTGACCGTAGATATATTGTCAATATAATGCAAGCAATGCCATCACAAATACGGTATTTATATTTTCCTATAGTATTTAAAAATAATATGCTTATATATAAAGCTGTACGTGAAAATAATATAGTGAAGATAGTTCAAGAAAATATTGAAATAGTTTAAAATTTTTACCAGCCGAAAAAGTAAAAAGCCTATGAAATCAAGCATTAAGAAGGATAGGCAGAGAACTGAAATCGGCTGGTAAGATTTCTATTAAAGATTGAAAAATAAGGATATATAAGCTATAATGAAGAAAAAGAATATTGATTTTACTGC # Right flank : ATTTAGATTGTAGAATTATGTTAAATGTATTTATGGTGAATTATTGATTAATATTAACAAGTGATGCTTAGCAGTAAAATGAATGAAAGAAGACATAACTTAGATTAAAGTTATGTCTTTTTTTTATAAAAGTTTTTAAAAAGAATGCCAGATTTTAGAAAAAGTAGAGGATATATAAAATAGAAAGCAATAAAAATGTAAATAGAAACACTCCTTTTGATTTTCGGTATAGGTTATTTGATAGCTTATACCGAAAACTTTTTTTAATAAATAATGCTAAATTTTGGAAAAAGCAGAGGATATATAAAGTAGAGATTAAAGATGATAATAAAAAATAAATAGGAGATAGAAAAAAATATATAACATAGATAAAAAAATTTAAAAACTATGCCAGATTTTAGAAAAAATGAAAGATATATATATTAAAGAATTGATGAGGTGGTAATTATGAAAACTTGGATGAAAAATTTGATTTTATCAATATTGGCTATAATAGCAGT # Questionable array : NO Score: 2.80 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:-0.06, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAGCATTAACATTGTACGGTCTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.54%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 10573-10289 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSVE01000019.1 Megamonas rupellensis strain OM02-7LB OM02-7LB.Scaf19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ======================================= ================== 10572 27 100.0 37 ........................... ATCGTTTTCTATAATCTGCAAGCGTTAACGCTTCTGT 10508 27 100.0 39 ........................... ATGCTATTAATATTTTTTGCTTTTTCTATTTCCATACTT 10442 27 100.0 37 ........................... CAATTATAAAAGCGAATATTCCAACCATTACTTTTCA 10378 27 100.0 36 ........................... TTCTTCCTTCAACATATTCACCAGTAGATTATAAAA 10315 27 85.2 0 ....................AA.G.G. | ========== ====== ====== ====== =========================== ======================================= ================== 5 27 97.0 38 GTTAAGCATTAACATTGTACGGTCTCA # Left flank : CAAAAATTTTTTAAAAGCTATGCCGAATTTTGGAAAAAGCAGGAGATATAATATATAGAATAGATATTAAAGAGGGCGATAAAAAAATAAATGAATATTAAATTTAAAGGTAAACTAAAATTTTGTGATTAAGATTGGAGCTAGTATTATGAAAAACAAAGTAAATGAAATTAAAACTAAAATTTGTATTCCAAAAGGATTTTTCGGTGGGAATTGTTCAGGTTGTCGGTATTGGGAAGAATATAATAGAGACTCAAGCGGTAGAGCATTTTGTAGTTATTATGATGATTGGTATTATCCATCAGAAAGACGAGGTTGCTTTGCTCGGAAGGAATAAAAGAAGATGAGTTTTGCCAGCCGAAAAAGTAAAAAGCCTATGAAATCAAGCATTAAAAAAGGATAGGCAGAAAACTGAAATCAGCTGGTAAAATTTCTATGAAAGATTGAAAAATAAGGATATATAAGATATAATGAAGAAAAAGAATATTGATTTTACTGCG # Right flank : TTTAGATTGTAGTGTTGTGCTAAATGTATTTATGGTGAATTATTGATTAATATTAACAAGTGATGCTTAGCAGTAAAATGAATGAAAGAAGACATAACTTAGATTAAAGTTATGTCTTTTTTTTATAAAAGTTTTTAAAAAGAATGCCAGATTTTAGAAAAAGTAGAGGATATATATAATAGAAAGCAATAAAAATGTAAATAAGAACACTCCTTTTAATTTCGGTATAGGTTATTTGATAGCTTATACCGAAAACTTTTTTTAATAAATAATGCCGAATTTTAAATTTGCTAGGTAATATATATAGTAGAGATTAAAGATGATATTGAAAAAATAAATATAAAAATAAAATAAAGTTTTATAGATAAGATGGGAGATTTTATGATGAAAATAAAAGCAAGTATCTTTAAAGAAATTATAGAAAGTCCTGCACCGCCTCCAGAAGTTGGTGGTATAATCGGTGGCAAAGAGGATATTATTACTTGTTATTTTGCAGATGA # Questionable array : NO Score: 2.91 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAGCATTAACATTGTACGGTCTCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.96%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 3 12636-12343 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSVE01000019.1 Megamonas rupellensis strain OM02-7LB OM02-7LB.Scaf19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 12635 30 100.0 37 .............................. TGTGCGACCACTGGAAAATTAGTAAGCTCCGTTTTAA 12568 30 100.0 35 .............................. GCCACTTATTGGGAATGGTTCAGAAAAATTAGCAC 12503 30 100.0 36 .............................. TCTGGATTTCCCCATGGCATTTCATGTCTTAAGAGT 12437 30 90.0 35 ...........................TAT GAAATGGTTTGTTTAATCATTATTTGTTTAATTAT 12372 30 70.0 0 ......T.....T.......AA.G.G.TTT | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 92.0 36 GTTAAGCATTAACATTGTACGGTCTCACGC # Left flank : CAGAATTTATAGCAGGGAAAAAAGCATTGAATAATGCTGGTGAAAAAATGGGAGATTATATTGTAGATAAGCTTTTAAATTATGGTAGTGGGAATAGACAAAATATAGAACTAAAAGTTATAACCACTGATTATAATAAAGTGAATATGATAAATAACGCTTTACAGAATATTCGAGGAGTAAATTCAGCAAGGGTAAATAGTTATGATGAAGGTACAGCAACTATTGATATAAAATATTCAGGAACACCACAGAATATTTATAATCAGTTAATTCAAAATGTAAATTGCAATCTTAAACTACAACAAATTACGTATAATACTTTAACGATAGTAGTATATTAAGTTTTATTTACCAGCCGAAAAAGTAAAAAACCTATAATATCAAGCATTAAAAAAAATAGGCAGAAAACTGAAATCGGCTGGTAAAATTTCTATGAAAGATTGAAAAATAAGGATATATAAGATATAATGAAGAAAAAGAATATTGATTTTACTGCG # Right flank : AGTTTGTAGGATTATATTAAATGTATTTATAATGAATTATTGATTAATATTAACAAGTGATGCTTAGTAGTAAAATGAAAGAAGACATAACTTAGATTAAAGTTATGTCTTTTTTTATAAAAATTTTTAAAAACCATGCCGAATTTTGGAAAAAGTAGAGGATATATATAGTAAAGATTAAAGAGGGTGATGAAAAAATAAACGAATATTAAACTTAAAGGTAAACTAAAATTTTTTGATTAAGATTGAAGTTAGTATTATGAAAAACAAAGTAAATGAAATTAAAACAAAAATTTGTATTCCAAAAGGAACTTTCGGTGGAAATTGTTTAGGTTGTCGGTATTGGGAAGAATATAATAGAGACTCAAGCTGTAGAGCATTTTGTAGTTATTATGATAATTGGTATTATCCATCAGAAAGACGAGGTTGCTTTGCTCGGAAGGAATAAAAGAAGATGAGTTTTTGCCAGCCGAAAAAGTAAAAAACCTATGAAATTAAGC # Questionable array : NO Score: 2.74 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAGCATTAACATTGTACGGTCTCACGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 14847-14491 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSVE01000004.1 Megamonas rupellensis strain OM02-7LB OM02-7LB.Scaf4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 14846 30 100.0 36 .............................. TTTTTCGGAAGAATTATATTTTAAACGATATAAAAC 14780 30 100.0 35 .............................. GTGTACTTTGCTAAGGTGCCTCTACAGAAATCTAC 14715 30 100.0 36 .............................. TCAAAAACCCAATATGGGCTTTGCCATTTACCATTA 14649 30 100.0 35 .............................. GAATAATACCGCTTTCATGGCTTCATTGTGTTTAG 14584 30 100.0 34 .............................. TCATTATAAGATGTCCCCTTTATCTAAATTGTGT 14520 30 83.3 0 ...............A.......TT..A.A | ========== ====== ====== ====== ============================== ==================================== ================== 6 30 97.2 35 GATAAATATCAACAGGTGCTGTACGAATAC # Left flank : CTTAAATTTTTGCCTGCTTTTACTTCATCAAGAACTTGCTTTGTTTCATTATTAGGATTTAATGTTAAAGCAAAAGGAATGCCATTATTTCTAACAACAGCATTTAAAAACATATTTACAGCTGTAGAAGTATTTAATCCCAATAAAGATAAAATTGCTTCAGATTGTTTTTTCAAATCTTTATTAACTCTTATATTTAACGTTGTAGTTTCAGACATATATATCACACCTCTCAATATTATTATATATAAATTTGACAAAAAAATATATAATAAAGACAAAAATTGACAAAATTCATAGATTTTTAATCATATATTTATAAATATTCTTTAAAATAAAATTTACCAACCTAAAATTTATAAAATCCTCATAAAGCTTGATTTTATTGACCTACTCAAATCTAATATATTATCTATCATTTACTGGTAAAAATTATAAAAGTCTTGCAATATCAATAGTTTATAACTATAATGTAATTAATAAATCCTAATAACATTAGG # Right flank : AAGTCCTCTTTTCTAATAAAGAGGACTTTTATTTATTCCAAATTAATTAATTTTTCTTTTCAATACTCACCTTTATAGGTTATAATTATATACATTATGCTTAGAAAGGTTTTTATCATTATGAAAAATTTCTTTATTGAGTTTAAAAAATTTGCTTTTAAAGGTAATATGCTTGATTTAGCAGTTGGTATGATTATTGGTACTGCTTTTACAGGGCTTGTAAATTCCATTGTAAAAAATTTAATCATGCCTATAATCAGTATTTTTACTGGCGGTATTGATTTTAATAATATGTATCTGCCACTTAGTAAGGCGACTTTTATACTCGCTGAAAAAGGTGCTGACCTTGAAACAGCAAAAAAAGCTGGTGCAGTTTTTGCTTATGGTGCCTTTTTAACAGATTTTCTCCAATTTTTAATTTTGGCTTTCGTAGTCTTTTGTTTAATTAGACAGCTAAACAAATTAATTCCTATTCCTAAAGAACCGCCAAAAACAAAAAT # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAAATATCAACAGGTGCTGTACGAATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 60178-60599 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSVE01000004.1 Megamonas rupellensis strain OM02-7LB OM02-7LB.Scaf4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 60178 30 100.0 36 .............................. TGTAGACAAGAGAAAAGCTAAACGCTTATTTAACTT 60244 30 100.0 34 .............................. GTGTGTATAGAAGACATAATTAGGCATTGTTACA 60308 30 100.0 37 .............................. ATTACCAGTGATTACATTAGAAGTATTTTGATTTTGT 60375 30 100.0 36 .............................. ACTAAAGCTCCTATAATAATCGCTGGATTATCTATA 60441 30 100.0 34 .............................. CTATTAACCAGCTCAGAAATGCTGTACGCCTAAA 60505 30 100.0 35 .............................. AAGGTATATCTTAGATTGGCGGATATTAGGATATA 60570 30 93.3 0 ........C........A............ | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 99.0 36 GATTAACAGTAACAAAAGTTGTTTTTGAAT # Left flank : CATATTCATTGAAAGCAGGGTATTGATGAATGAGTAAAAAAATAAATTATAATTATGCTTTTTTATTTTACGATGTAAATGAAAAGAGAGTACAGAAAGTATTTAAGATATGTAAAAAATATTTATCACATTTTCAAAACTCGGTATTTAGAGGAGAGATAACACCATCCAAATTAATGAAATTAAAATTGGAACTACAAAAAGTTATAGTAGATGAAGAAGATTTTGTTTGTATAATAAAGTTAATGAATGATGATGTATTTGGTGAAGAATTTATAGGTAAAAAAGATGTAGAAACTGGAGAAAGTTTGTTTTTATAGACTAAATTTTACCAGGCATAAAAATAAACATATGCTGATAAACCCTTATAAATAAAAGCGTTATGGCACATTTCTTTCACTAGAAGGATAAATGCATTATGCCTGGTAAAATTTACTTAGAATGTTGAATTATCAAGGTTTTTGAGTTATATTATAAAATATAAAGCCTTTAAAAACGAG # Right flank : TTCTCCCCTGACGCTAGATTACAAGAAACTTTCAATATATTGGATAATATATATAATATAAATGATATGGAAAATGGAATTTTAACAAAACTTTTTAAATAAAAAATGCATTAGAATTTTTTCTAGTGCATTTTTTTATATAATTATATTGTGAGGTGAATTTTATGGAATTTAGAGTATTAAAATATTTTTTAACTGTTGTAAGGGAAGAAAATATAACAAAAGCAGCGAATGTATTACATATTACTCAGCCAACATTGAGTCGACAATTAGCTCAATTAGAAGAAGATATTGGAGTAAAATTATTTAATCGTGGAACTAGAAAGATAAGTTTAACAAATGAAGGAATGTTATTAAGACGTAGGGCAGAAGAAATAATTTCTTTAGTGGACAAAACAGAACAAGAATTAAATGAACAAGATGAAATGTTAGATGGTGTGATTTCTTTGGGATGTGGAGAATTAAGTTCTGTATCAACACTAGCAGATATATTAGCTGGT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACAGTAACAAAAGTTGTTTTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 3 99391-99683 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSVE01000004.1 Megamonas rupellensis strain OM02-7LB OM02-7LB.Scaf4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 99391 30 100.0 36 .............................. TAAAATTTCTGTATAACGTGTACCACCTCGAGCATC 99457 30 100.0 35 .............................. CAAAAAATTCATTCTGGTGCATATAGAATAAATCC 99522 30 96.7 36 ...............T.............. GGTAATACATAAGGATAAGGATAACCATTTTCCCCT 99588 30 93.3 36 ...............T........C..... CCTTAATTGTCATTTAGTATATAAAAATTTTAAAGT 99654 30 86.7 0 A.......T........A........T... | ========== ====== ====== ====== ============================== ==================================== ================== 5 30 95.3 36 GATTAATAGAAACAAGAGTTGTATTTGAAT # Left flank : ATGGCAATAGATATCAATACAAGAAGACCATTACTTGGCAATATCACAGGTGGTCTTTCTGGCCCTGCTGTAAAACCTGTAGCACTCCGCATGGTATGGCAAGTAGCAAAAGCTGTAAACATTCCAATTATTGGTATGGGCGGTATTGCAAGTGCAGAGGATGCTATTGAATTCTTGCTTGCAGGTGCAACAGCAGTCGCAGTGGGAGCACATAACTTCATTGACCCATCAGCATTAAAAGTAATTGCAGATGGTATCGCTGAATATATGCAAAAACACAATATTGAAGATGTAAATGAACTTGTAGGAGCGTTACAAGCTTAAATAAAAAATTACCAAGTGAATTTTTAATAAATAGTCTATAAAGCTAAGCAATATATGTTTTATAGGCTATTTTTTATATAACTAATAAAAATAAATCACTTGATAAAATTTTTTATATCCTTGAATAACAAGATTTTAAAAGCTATAATAAAAAAAGAAATGCTAATAAATATAGG # Right flank : TGAATTAGGAGAGATAAATAGTTGTGGAAAATGTAAAAGATATAAAGAAAGTTATTATTGATATATGTTATCAAGAAGAGGTTACAAGACGCTATATTTTAGATTGTTATAATAAGAAATATAATAAAGAGGTACAAGAAGCAAGTTTTAATAGAATGATAAATAATAATAATGTTAAATTTAGTACATTAGTAGATATATTAGATTCTGTAGGTTATACAATAGATATTAGAAAAAAATTATAATAAGAGTTGTATTTATAAAAAAACTTATTGACAGTGGATATAGTTTGTGATATATTAAGTTACGTTGTATTTGAGATGCAACGTATTGCACAAGAAGAAGTCACCGCTTCTCACCTTATGGCGTGCTAGTCACTAGGGTTACTAATTAAAACAAAAACGTTTAACGTATATTTTAATTTGTAATATCAGAGGGTGACGTGCGTCATCCTCTTTTTTGTGTATATAATAAAAATAATATATAAATAATGAGGTGTT # Questionable array : NO Score: 2.74 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAATAGAAACAAGAGTTGTATTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 70593-67151 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSVE01000009.1 Megamonas rupellensis strain OM02-7LB OM02-7LB.Scaf9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 70592 30 100.0 36 .............................. TACATTATCTCTATTTATTTTGGTTATTCCTAACTC 70526 30 100.0 36 .............................. AGCTTATTATCTATTCTATCAAGCTTATCATCTATT 70460 30 100.0 35 .............................. TCTGGGAAGGCATAATATAAAGAACTTACAAAAGA 70395 30 100.0 36 .............................. TGGATGAACATCCACTTGATCGCAAACAAGACATAT 70329 30 100.0 36 .............................. AATTGATGCTGTTTAAGGTTTCATCTGGTTTTTTAT 70263 30 100.0 35 .............................. TCAACTAGAAGAGCAATATAAAGAGGAATGTTACC 70198 30 100.0 36 .............................. AACTGTTGATGGCATATATGCTTTAGTTTTCGCATT 70132 30 100.0 34 .............................. TCAATAAAAGCAACGTAATAGTTGCTTAAATCTT 70068 30 100.0 36 .............................. TTGGCTCGCATTTCTACACCTGCACGGATTAGCCCG 70002 30 100.0 35 .............................. ATGTTAATTACCGTTGCCGCGCTTCTCTGTTTTTC 69937 30 100.0 35 .............................. AAGCGAAACACAAAACCTACGATATGATTATTTTT 69872 30 100.0 36 .............................. AACTTCTATGTCTAAACAAAAGGATATTAGTGGAAA 69806 30 100.0 36 .............................. TTTGCCCTGGGAATTGCGGATATTCTGTTAAACCAT 69740 30 100.0 36 .............................. GCCAGACAAACCTATACAGAAGAAATGTTAGCGGCA 69674 30 100.0 36 .............................. TCTAGCGTTGCTGTTCTATATCCACCTTTACTTAAA 69608 30 100.0 34 .............................. TAATAAAATCTCCTTTTAATATACTTAATATATA 69544 30 100.0 35 .............................. CTATCTGCCAATTTTTCGGCAAATAGTCTTGTTAA 69479 30 100.0 36 .............................. GCAGGCATTGCTATTTCCCACAAAGAAGAGTCTGGA 69413 30 100.0 36 .............................. TGGTTTGATACTCAAATGCAAAAAAGATATGGTTCT 69347 30 100.0 35 .............................. ATGAAACCTACAAACCCTAAAGAATTTATCTTTTC 69282 30 100.0 35 .............................. GCAGAAATAATTTCTACAATATCAAGTTCATCTGC 69217 30 100.0 37 .............................. TCGGTAAGTTCAGTCGCCCATTCGTCTTTTTTCTCCA 69150 30 100.0 35 .............................. AGTGACTTAAGGTTACAAATGTTATATTGAGTTGA 69085 30 100.0 34 .............................. TGTTTGATATGGACGAAGCAGGTAGAAAAGCAGT 69021 30 100.0 36 .............................. CAAGCAATATTTAATTCACTATGTCTACAATTATTA 68955 30 100.0 37 .............................. TTTTCTATTTGTTTTTTTCTAGGCATAACTTATTTTA 68888 30 100.0 35 .............................. AAGTCGTTTTCCTTTTCCTGGATTACCCATAATAA 68823 30 100.0 34 .............................. TTAGTGATATCATAAAAACTTAATATGCAAGGAT 68759 30 100.0 36 .............................. ATTAGAAGATGATAAACAATGGCATAGCTATGCTAG 68693 30 100.0 35 .............................. TGGCATTTTGTGCTATATCTCCCTGTTTTAGATTC 68628 30 100.0 39 .............................. ATAATCAAAATAATCAAGTCCGCTATTTGTTCATCACGC 68559 30 100.0 37 .............................. TACATCACAAACAACTGCGGAAGGAGATTGCAAAACA 68492 30 100.0 35 .............................. TCGAAGCTTTAAAAGATTTTGGGATTAATGTATAC 68427 30 100.0 36 .............................. TTTATATATTCTGTTAATCCAGACGTTGTAAACGTA 68361 30 100.0 36 .............................. GTTGGGATATCCCATGTTACGATAATTTGGCTACGG 68295 30 100.0 36 .............................. AAAGGAGGATATTGAATATGAGAGAGTATAAATTTA 68229 30 100.0 36 .............................. CTTGCAAGCGTTAAATTTTCTCCTGCCCCGCTTGCT 68163 30 100.0 35 .............................. ATCTTTTCGCCTGTTTCTGGTACAAAAAACGAGCA 68098 30 100.0 35 .............................. GAAGCAACCCAATGGGCAGACCAAATGGTTGAAGA 68033 30 100.0 35 .............................. TTCACAAAAGGATTAGCCAATTTTTTTAACACTCC 67968 30 100.0 36 .............................. TTTACGCTTTCTGCTGTGTGTTCTACCCAAGGCTTA 67902 30 100.0 36 .............................. TTACAAGCATTTCTAAAAATGGTTCTATACTTATGT 67836 30 100.0 35 .............................. GGTACATTATAATAATACATAGATACACTATAGAT 67771 30 100.0 35 .............................. ATGACATGCGAATGAAGATAGATGCCTTAGCAGGT 67706 30 100.0 35 .............................. GCAAGAATGGAGCAAAAATTATATTGCTAATCAAG 67641 30 100.0 36 .............................. TTCCCATCAAATGTTTTAAATATATGGTTAGGTGTA 67575 30 100.0 36 .............................. TAAGAGTATTATGGTTTGTGATGGTAAACCTGTTAT 67509 30 100.0 35 .............................. TATCGTTTGGTCTCATGGTCGTTAACCATTTCAGA 67444 30 96.7 36 ...............A.............. TTACCTGTGAAGATGAGGTTCCCATTTAGACGAATT 67378 30 100.0 36 .............................. GTATACTGTTTGTCATCATTAATAATTAGAACTTCA 67312 30 100.0 36 .............................. GGGGAGATATTGGAAAGGGTACGAGTACTATATGTG 67246 30 96.7 36 .......T...................... TTGGTAACAAAATCCTTAATATTTTCTAAAACTTCA 67180 30 90.0 0 .......T................C.A... | ========== ====== ====== ====== ============================== ======================================= ================== 53 30 99.7 36 ATTTAACATTAACAAGTGTTGTATTTGAAT # Left flank : ATTATATCATAATTATTCATAAATTCTAAGACAATACGAAAAAAGATTACATATTTTTAAGTTTTACTATTGAAAATTATTTATTTATTAAATTTTATAACATTTTAGTCATATGAAAAAAATTATAAAAAAGTATTGCAAAATACATAAATGAGCAGTATAATAATTTTTGTTATTAATGACTCACTAGCTCAATTGGTAGAGCATCTGACTCTTAATCAGCAGGTTCCGGGTTCGAGTCCCGGGTGGGTCACCATATAATTTATAAAATTAAAGCAACTATCATTGATAGTTGCTTTTTGTTTTTTACTACTTGATAAAATTTTATTTACCATAAAATTACCAGCTAAAATTAAGAAAAACTCCTCTAAAGCTTGAAAATTAAACCTTTTTATAAAATCTCCAAAAATCCTATTATCGCTGGTAAAAAACAACTAAAATCCTTGTATATCAATACTTTTAATAGTATAATGAAAATCATAAAGATTGATTTTTCTAGC # Right flank : CTTATTATTAAAAAATTATAAAAGGCTTTTAATAGATTTTGTCTTCTATTAAAAGCCTTTTTCTATTTAGAATTATTTTTCAATTCCTCTAAAAATTTCTTATCATCTTTGCTTAATTCTACTTTTTCAAGTAAGTCTGGTCTATTTGTATACGTAACACGCAAAGATTCTTGTCGACGCCATTTTGATATTTTAGCATGGTCTCCTGAAAGTAGTACATCAGGTACGCTAAGACCTCTATACTCACGTGGTTTTGTATATTGTGGATATTCTAGAAGCCCATTATAAAAAGAATCTGTTGGCGCAGACTCTCCAGAGCCTAATACACCTGGAAGCATTCTTGATACAGCATCAATTACCACCATAGCAGGAAGTTCTCCACCTGTTAATACATAATCGCCAATAGAAATTACTTCATCAGCTAAATTTTGTACCACACGATTATCAAAGCCTTCATAATGACCACAGATAAATATTAACTGATCAAAATTAGCAAGTTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAACATTAACAAGTGTTGTATTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //