Array 1 1006-2163 **** Predicted by CRISPRDetect 2.4 *** >NZ_OABX01000024.1 Neisseria meningitidis strain Neisseria meningitidis isolate R781, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1006 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 1072 36 100.0 30 .................................... AAACTCAACGCATCTAACATAGTTCACACT 1138 36 100.0 30 .................................... GCCCCTGCTCGCGCACCGCCGCAACCTGCC 1204 36 100.0 30 .................................... GGTCAGATTACAACAACGTTGAGCGTGTGT 1270 36 100.0 30 .................................... TCTTTTGACAACAATTTCACTGGCGAAATG 1336 36 100.0 30 .................................... TCATTAAATGATGTATCACAAGCACTTTTT 1402 36 100.0 30 .................................... TACATCGGCGGGATGTTTCAGTTCGTTTAT 1468 36 100.0 30 .................................... ACGGCTGCCGCAACGCCGCCCGAAACCATC 1534 36 100.0 30 .................................... GAGCATCTATTAGGGGTGAAGGTAGATCTT 1600 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 1666 36 100.0 30 .................................... AATATTTTTTTATAAATTGCCGTCATGACG 1732 36 100.0 30 .................................... AATATTTTTTTATAAATTGCCATCAGAACG 1798 36 100.0 30 .................................... AGTAAGATGAGAAAATTATTGGGGGGTGGC 1864 36 100.0 30 .................................... TCCACTATATTTGCTTGCGGCAAGATGAAA 1930 36 100.0 30 .................................... TATTTTATGACGCGATGCACATCGTCGACA 1996 36 100.0 30 .................................... TTAACACGTCGTCGCCGACTTTGAGGTGTT 2062 36 100.0 30 .................................... CTGTACATAAGATGGGTTATCGGGAGTTTG 2128 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 99.8 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTAGGAATTTAGGGAATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //