Array 1 42-340 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJFW01000036.1 Streptococcus salivarius PS4 contig00073, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 42 36 100.0 29 .................................... AAAATCCCAGACGATATCCCAGTGAATGA 107 36 100.0 30 .................................... TTTTCGTGGAATCTTCACGTTTGCGATTTC 173 36 100.0 30 .................................... CCATATCAATCATGGTTTGATTCTTCTTCT 239 36 100.0 30 .................................... TTGTCCTTGGTACACAATCGGTTGCTGATG 305 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 98.9 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : AACTGTACAACGGAGCGCTACTCCTTTGATTATCTTGTTCAG # Right flank : TTTGATTCAACTTAAAAAGCCAGTTCAACTGAACTTGGCTTTTTTAAAATACGCGATAAACATAAGGATTGTCGGGTTGACTGACCTCTTTAACCTCAGTCAGGTTAAGGATAGGGAGGGTCTGTTTGAGATTTTTATAGTAATTCACAGAAATGGTACCTGTGACTGTTACCCAGGCATTATCCTTAAAGGTTTGATTGCTTCCGGTCGTTGCCAATCCGTAAACGCCTGAGTCGGCGATACAGTGGATGATACCGAAACGGAAGATAAACTGATAGCCCTTGGTTTGTGGGTCATTGTAGACAAAGCCTGTATAGCTGACCTTCTTACCTACGAAATCGTCAGGATAGAGGTAGATGAGTTCCATGACTTCCATGTAATTTTCAGTGGTAATGTGGATGGTCTCACGCCCCTTGTACTTGGCGAGTTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAACTGGTGTCAGGCTTCAAGTACTGAATG # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 44-375 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJFW01000044.1 Streptococcus salivarius PS4 contig00093, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 44 28 100.0 33 ............................ CAATCAAGCTCAGTGAAGAATAGCAACGATTGG 105 28 100.0 33 ............................ CGAGATACACCTAGACCAGTTGCAATATTTGAG 166 28 100.0 33 ............................ CAGCATAGTCCTTCACTTTTGATAAGTGGTCAA 227 28 96.4 33 .......T.................... TAAGGAGGGTTGAAATAGTTTGTTACTGTATAC 288 28 96.4 33 A........................... TAAGACTGGAACAGCAAATAGTGCAATAACAAG 349 27 96.4 0 .................-.......... | ========== ====== ====== ====== ============================ ================================= ================== 6 28 98.2 33 GTTTTTCCCGCACACGCGGGGGTGATCC # Left flank : GGGGTGATCCCAAGCCCTTGACTATGAGCTACCGGCTGAGCCAG # Right flank : CTACAAATTTTAGTCAAATGATGATATGACAATATAAATCGATTGGTTGAGGTCTCTTTTTAGATTCGCTAATTAGTTGATTACTTTTTAAGTATTGCCGTTGTAAGCAGCATATCTTATAGGTAGAAATGCTGTCATACCTTGTCATAGACTACTCCTTATTGTTTTAGAACTGTGTTGTTTCTAAAGGTTCCAAAACAAGCGCTTTTTCTTTATATGCACACCAAAAAAAGAGCCAATGGCTCTTTTTAATATCGTTTTAATATCCAGGCTCAAAGACTTCAATAATTTGAATAAGGTAGCCTTCATGGAAACCGACTCGGTAATCGACGTTTGGCAGTGTTTTAACCAAATCATTAAGCTCCTTGTCCTTGCTAACGGAATCAGTTAGGACTGGTAGTTCAACAACAAAAAGTTGGGAATGGTCCATTTGTAGATAGCTACTATGTATCTTAGTATCAGGACGGAGATGTTTGAGAACAGCTTTGTCTGAGGCCTGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 171-3 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJFW01000046.1 Streptococcus salivarius PS4 contig00096, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 170 36 100.0 30 .................................... TTTGGAAGGTAACCTCTTTAGGAAGTGTAA 104 36 100.0 30 .................................... TCAAAATCTTAGAAGAAGCAGGATATATGA 38 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGAAAGCTTTGTCTCAGAGGAGTCTTATGATAGTTTTTATAAGGAGATTGGTCGGCTAGTCAAAAAGTATCCAAACCTAACCTTTATTTTATTTCCAAGTGACCAAGGCTATCTAAAGATTGATGAGGAAAATAGTAGGTTTGTCAATATTTTATCTGATCAGGTAGAACATCTGTATGATATTGAGTTTATGTATGAAAGTGTAGCGAAACATTATCCAAGTAATAATTTTCCAACGAGAGAGGATTTTAGGATGTCCTTAGAGATCGTAACGCCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATTTTGAATATCCTAAATCACTTGTTTCATTTTAACTACTGTATAAGATATTCACAAACTCCTGATGAGGAGCTATTACATAGATATTTAGAAAATAAGAATTGACAAGGACAGTGATTGATTCTATAATCACTATGTGGGTATAAAAACGTCAAAAATTCATTTGAG # Right flank : CTT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.05%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 15403-15253 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJFW01000007.1 Streptococcus salivarius PS4 contig00016, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 15402 28 100.0 33 ............................ CGGTCAGGGAACAATATTCCTAGATACATACAT 15341 28 100.0 33 ............................ TGCAATTATGAGATAGAGGACACACCTCCAATC 15280 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 3 28 100.0 34 GTTTTTCCCGCACACGCGGGGGTGATCC # Left flank : GAGAAAAAGAATACAATCATTGAGATTGGAGCAGTCAAGTTTAATGGACAACAAGTAGAGGAATTTAATTCTTTGATTAAGTATGAGGAGAAATTACCTACTGCAATTTCTAAATTGACAGGAATTTCTAAATCATTATTAGATCAAGAAGGACGCGATTTAGAAGAAGTACTTTCTGAATTTTTATTGTTTATTGGTAAATTAACTTTAGTTGGCTATAATATCCATTTTGATATTCAGTTTATCAATAATAAACTGGATAAATTTGGTTTACCCATATTAATAAATAAAACTCATGATATAATGAGATACGTCAAGGATGAGAAGTTATTCTTGGATAATTATCAATTGCAGACTGCTCTAAAGGCATATGGAATCGAGGATCAAGTTCCTCATAGAGCTTTGAAAGATGCTAGACTAATCTATCATTTATCAACTAAAGTAAATAAATTCTTAGCTAGGATGAAAGAAAAGTCTTAATTTCATTGGGATCTTTTAGT # Right flank : TGGATCAAGAAAACACTTGGCAGCATCGAAGCCATAAAGCTCAGATGGATTGCTGGTCATCACTTTCAAGAGTTCAATCAAGCTTAAATGACCCGCCTCAACCAAGTATGTCAATCCAAGAGATAGAGACGTTTCAAGTCCTGTCATTCCTGACGGGGCTTTAGTCACATCAGCCACATTCTTTTCGTCAGCATGATGTGGCGCGTGGTCTGTGGCAATAACAGTTATCACTCCAGATTTCAATCCCTCAATAACGGCTTGACGGTCAGATTCCAAACGAAGTGGTGGATTCATCTTGGCATTAGCACCTTTTGAAAGCAAGAGTTCTTCAGTTTTTGAGAAGTGCTGTGGTGCTACTTCCGCTGTGACTTGTGCTCCAAGTTTTTGAGCAAATTCAACCACTTTGACAGATTCAGCTTTTGACAAGTGTTGAATATGAACGTGGGCTTGGGTATCATAAGCAATCATGACATCACGCGCAATCATACTGTACTCAGCTA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //