Array 1 134949-135373 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPFT01000005.1 Streptococcus mitis strain SK1126 gsmSK1126.contig.4_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================== ================== 134949 35 91.4 30 .......A....A.............C........ ACCGTGATTTAGAAAACGGTGGACGGCTAG 135014 35 91.4 30 .......A....A.............C........ TAGATGAAAAAGGAAATCCAATTCCAGGTG 135079 35 100.0 30 ................................... TATAAAGATTATTGGGATGATTTAGTGTTG 135144 35 100.0 30 ................................... AGTAACAACTACTACAATATCATTAACGGA 135209 35 100.0 30 ................................... GAATAGAGTTAACTCCCATATCTTTCAAGA 135274 35 100.0 30 ................................... TTCACTTCTCCCTTCTAGCAAAAACATAAG 135339 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ============================== ================== 7 35 97.5 30 GTTTTATCGGTCGCAATTTTGGAGACTACAAAAAC # Left flank : GAGAAACATCATGGCAATCTCAAAAGAGAAAAAAATGAAATCATTGCACAATATGCACGTCACGAAGGTGATACGGGTTCAGTAGAGGTTCAAGTTGCTGTCCTTACTTGGGAAATCAACCACCTTAACGAACACATCAAACAACACAAAAAAGACCACGCTACTTACCGTGGATTGATGAAGAAAATCGGTCGCCGTCGTAACTTGCTTGCATACTTGCGTAAAAACGACGTTAACCGTTACCGTGAGTTGATTAACTCTCTAGGACTTCGTCGTTAATTCAAGATACAAAGGCCGTCAAAAGCACAAAGCAAAAATAGGAAAATTGACGAAGAAACTTCAGTTTCTAGGAGGTTTTATCTTTTTTGCCAAGTGCTTAGGCTGTGTTCAATTGAGCATATCTTGATAATGAAGCTACTCTAAATTGGGTAGCTTTTTTGTATGGATTTTATCTCAATCTCAAATCAGCTCTCTAATTTTCAGAGGGCTTTTTTATTGAG # Right flank : CCTCAAATGGTATCAGCTAATTACACCATAAAGGTGCGCAGCTACTCGGCTTGAAAAGCCGAGTAGCTGTCTGCAAGCCCCCTCGGAGAGCCCACACTTTACGAAGCAAAGTATAGTATGTTATACTTTACATGGAAGTAGTCACCGACTTTCAGTTAGAAATTACTTTGTAATTATATTTTGAGGAGGAGTAAAATGCTTTCCTACGTTCGACATTACCCACTAGCGATAGCTAAATTAATGTGTCTGTGCTCTCCTAAAATCTGCTGATTTATTACTGACTAATACAGGAGTTTTTTTATGGTACAGACAATCATATCTGCTATTGGTGTTTATATTTCTACCAGTATCGATTATTTAATTATTTTAATTATTTTATTTGCACAGCTATCACAGAATAAACAAAAATGGCATATTTATGCGGGGCAATATCTAGGCACAGGCTTACTTGTAGGGGCGAGTTTAGTTGCTGCTTATGTCGTTAATTTCGTGCCTGAAGA # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCGGTCGCAATTTTGGAGACTACAAAAAC # Alternate repeat : GTTTTATAGGTCACAATTTTGGAGACCACAAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.80,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 2 784333-783109 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPFT01000005.1 Streptococcus mitis strain SK1126 gsmSK1126.contig.4_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 784332 36 100.0 31 .................................... CTTGACCCTTTTGATGGGAGCAATTTTCTCA 784265 36 100.0 30 .................................... CTTTGTGACGATTGATGAAATTCGTCGTCA 784199 36 100.0 30 .................................... TTTTCACTTTGGGCGATGACTGAGTTCAAT 784133 36 100.0 30 .................................... CGAGTAGGAAGTCGGTCAATACGGTAACGA 784067 36 100.0 29 .................................... CTATTACCCGGTAATACGTTATAATATAT 784002 36 100.0 30 .................................... CCCTTCCTTGCTTGTGGATATAACGGGCAA 783936 36 100.0 30 .................................... CACCACTTTTTCTAGTAAAGTTCCTTAACT 783870 36 100.0 30 .................................... CAATCTTAACTGCGTTTGCAACAACTATGG 783804 36 100.0 30 .................................... AACAAGCCGGGTGAATGGTTTGATGACCAG 783738 36 100.0 30 .................................... TAAGATCATGAAAAACTCATATAACAAATT 783672 36 100.0 30 .................................... TGTTGCATTAGAAAAGTTTGTTGATTTGCT 783606 36 100.0 30 .................................... CTTTCATTTTGTTCATTCTCATTCGTAGGT 783540 36 100.0 30 .................................... ATAGCTTTTAGAGTCTTCAATGCTTGGACA 783474 36 100.0 30 .................................... GTGTTCCTTTAAAATCAGGTTGCTCAACTA 783408 36 100.0 30 .................................... CCATTGCTTGGATATATGTCAAAAATACTG 783342 36 100.0 30 .................................... AATGGGAGCAGATGAAAATGCAGGCTGCTT 783276 36 100.0 30 .................................... TCTTCCGAGAGGTTCAAAGGTCTTGCGAGC 783210 36 100.0 30 .................................... CCTCGCTCGTTTACTGGGAGAAAAAAGGAG 783144 36 94.4 0 ..................................TT | ========== ====== ====== ====== ==================================== =============================== ================== 19 36 99.7 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : GGACGATTTTCTATCCTATAATGATTTTGTTGAATGTTGCGAGAAAATGGAGTTTCTGACTAATCATAGCGATTCATTATATATTGTTTTATTTCCTTCCAATGAAGGTTATCTTCATGTCACGAAAGAAGTTTTAGAGGAAATCAATATTGTTTCCGATTATGTTGATCATTTTTATTCTCTAGAATTTATGTATGATCGCTTTACCAATCAGTATCCAATAAATCAAATGCCTGATGAACAAGAATTTTTAACTTCTTTAAGAAAAATTGGATCCTATTTATTTAGCTCGGACATTCTCCACATGAGTTTATCTGTAGAAGATCAAGTAGCATTAAAAATTTTGAATAATTTGTATCAGTACAAAATGAAAATAAAATTCTGTATTGAATCAATCAATCCAATGTTATTGAAATATTTGGAAGAATAGTATTGACGAGTGAGATTTAAGGCTTTATAATGTTTTTGAGGGAACAAAAATCAAAATTGACGAATTTGAG # Right flank : TAGATAATATTAACAATTGTTTAACTTATATAAAAACCCGCTCTGCTGAGCGGGTTTCGTCTATTCTTATCTTCTTACAGTACCCATGTACGGATGGCATGGGCAACGCCAGATTCGTCATTTGTTTTGGTGATGTATTTGGCGATTTTTTTGATTTCTGGATTTCCATTTTCCATGACAACGGGGTTTCCAACGACTTCCAGCATGGCACGGTCATTTTCTTCGTCTCCGATAGCCATGGTTTCATCTTTGGTCAATCTGAGTTTTTCAGCTAGGTGAGTGATGGCTGAACCTTTGTTTACATTCTTTTTAAGGAGTTCGAGGTAGAAAGGAGCAGACTTGTTGATAGAGTAGCGTTCGTAAAATTCTGCTGGGATTTTTTCAATCGCAGCATCGAGAATCTCTGGTTCATCAATAAACATACACTTGACGATTTCTTTATCAGCCATTTCTTCAGGAGTTCGGTAGAAAATAGGCATGCTGACGAGGGTTGATTCGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //