Array 1 251910-253158 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADBJE010000003.1 Escherichia coli strain C3 NODE_3_length_343492_cov_14.4844, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 251910 29 100.0 32 ............................. GCATTACGGTAAATCGCTGGGGCTGTCCCGTA 251971 29 100.0 32 ............................. CTGGGGCTGCACATTGACAATAAACCGCCGCC 252032 29 100.0 32 ............................. ACTTGATTACCGCTATTTTCTGACGATTTAAT 252093 29 100.0 32 ............................. CCTGATAATTTACGCTATTCAGCGGAGATGAT 252154 29 100.0 32 ............................. TGGCTATAGTATCATATGATTTCTATTTGTCA 252215 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 252276 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 252337 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 252398 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 252459 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 252520 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 252581 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 252642 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 252703 29 100.0 32 ............................. GCAAATTAAGCTGGCTGGCAATCTCTTTCGGG 252764 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 252825 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 252886 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 252947 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 253008 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 253069 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 253130 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 278858-279861 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADBJE010000003.1 Escherichia coli strain C3 NODE_3_length_343492_cov_14.4844, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 278858 29 100.0 32 ............................. TTGTGCGAACCTCAGTTATTGTGCCCTGACGA 278919 29 100.0 32 ............................. AATTTATTCGGTTTATTCCGTCGGCGCGCGAC 278980 29 100.0 32 ............................. GGGATTTGCACTCCAGTTGATTGACCCGCAGC 279041 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 279102 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 279163 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 279224 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 279285 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 279346 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 279407 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 279468 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 279529 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 279589 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 279650 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 279711 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 279772 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 279833 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //