Array 1 7626-10300 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMDY01000042.1 Oceanivirga salmonicida strain D4A NODE_42_length_12053_cov_69.7565, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 7626 36 100.0 30 .................................... TAGCAACTTATCATTAATTTTTTGCTCTTT 7692 36 100.0 30 .................................... ATGCATTAAGTTTGTTACAAAAGGGTTAAA 7758 36 100.0 30 .................................... ACTAAAACTAAAAAACAATATGTACCCAAA 7824 36 100.0 30 .................................... GGCTACTCTATTGTATGTTTTTTCAAATAT 7890 36 100.0 30 .................................... CACGCAGTTGCATAATTCTCGCAGTGTTAA 7956 36 100.0 30 .................................... TCGTTTTGGTATTTTATTTTTAGTAGTATC 8022 36 100.0 30 .................................... GCTAACTCTATTGTATTCTCTTTCGAATTT 8088 36 100.0 30 .................................... AAACAAGTTCATACAAAAATCTGAAAAAAA 8154 36 100.0 30 .................................... TAGAGTTAAAACGAACTGATTAGATAAGTA 8220 36 100.0 30 .................................... AAAGAGACGGTGAACATTATACTGGGTACA 8286 36 100.0 30 .................................... GCGATATATGCGAAACTGAATGGTGCCAAA 8352 36 100.0 30 .................................... AAGTATTTGCTTAAAACTTGTAGGTGTCAT 8418 36 100.0 30 .................................... TATTTTGATTTCATTATTATCTTTATTATT 8484 36 100.0 30 .................................... AGTTTTTCATGACCTATTTCTAATTCTTTC 8550 36 100.0 30 .................................... AAATTTTTCTTTATGAAATTTATAAGGTTT 8616 36 100.0 30 .................................... AGCTCATTACCAATTAGAGCATACAATCTT 8682 36 100.0 30 .................................... ACTATCATTATCGTTATGTCATCCGCTTTC 8748 36 100.0 30 .................................... CTTATCAATATTACCTATTGACAACTCGCT 8814 36 100.0 30 .................................... ATATATAAAGACACTTTTATTAATATTTTT 8880 36 100.0 30 .................................... TTGATTTATTTTATAACTTTAATTAAAATC 8946 36 100.0 30 .................................... TCAGCCATTTCAACAGTTACTTTATATGAA 9012 36 100.0 30 .................................... AGAAAAAGGCTAATATGAACCATGAATAGT 9078 36 100.0 30 .................................... TAATCCTTCTGTTGATATTATCATTTTAGC 9144 36 100.0 30 .................................... CATCGCTTCATCATAGTCTACTATCTCGTA 9210 36 100.0 30 .................................... TTGATTTATTTTATAACTTTAATTAAAATC 9276 36 100.0 30 .................................... TCAGCCATTTCAACAGTTACTTTATATGAA 9342 36 100.0 30 .................................... AGAAAAAGGCTAATATGAACCATGAATAGT 9408 36 100.0 30 .................................... TAATCCTTCTGTTGATATTATCATTTTAGC 9474 36 100.0 30 .................................... ATAACAATATACACTATTAACAACTATATA 9540 36 100.0 30 .................................... ATTTACTTGATAAAGGGTATACAGAAGAAA 9606 36 100.0 30 .................................... AAGGTAAAGAAAAATAACTTAAATTATATC 9672 36 100.0 30 .................................... AAAGATTTATTATAGTTGTAATTAGTTCTA 9738 36 100.0 30 .................................... TTTATACATTCTACGAAAATCTTTAACTAA 9804 36 100.0 30 .................................... CCTAATTCCGCTAATACTTGTAAGTGTTTC 9870 36 100.0 30 .................................... CTGTTTCCCCTTCACCTAAAAACTCGCTCC 9936 36 100.0 30 .................................... AAATAATTAGCCTTATTTTAGTTCAAAATT 10002 36 100.0 30 .................................... ATAACTTGTTATTTGGACAATGAAAACTTT 10068 36 100.0 30 .................................... AGTAAATTTGATGGTTTAGCACAATACAAT 10134 36 100.0 29 .................................... TATATTATATTTGCTTTTTGCTAAGTTCA 10199 36 94.4 30 .......G..T......................... ATTCCATTCTGTTAAGAATAGCAGTGAAAT 10265 36 88.9 0 A.......T.................T....T.... | ========== ====== ====== ====== ==================================== ============================== ================== 41 36 99.6 30 GTTTAAGACACCTTTAAAATAACATACTTCTCAAAC # Left flank : AATTTTTATCTATTTTAGAGATTTCATTTTCAAAAATTTCATTTAATAAATCTAATCTATATTTTCTCCTTTTTAATCTTCTTCTTGAATTTCTAAATATTCTTCTTTCCGCAGCAGTTTTTGCTTCATCAAATAGTCTACTTCCCCACATTCTTTTTCCATTAAATTTAAATATATTATACTTTTCATCAGTAACTGCCCATCCTACTGAATTAGTCCCTATATCTAAACCAATATAATAATTTGGAAATTTTTGTTTAATTTTCAAAATTATTCTCCCCTTTCATTTCAAAAAACTTGACATTTCCAAATTTTTTGATATAATATTATTAAATAACATACTGAGTTCAAATAAAAATTTTTGAACCCGCATATGTGAATATGCTAACTTCTGAATAGTCAGAAGTTTTTTTATTTTATATTTATAATCATAAACCTAATAAAATATTAGGATTTTTTTATTTTTAGTTTATAAGGTACATCTTAAACCTCAATTTGAG # Right flank : CTATCTTTATCAACTTCTTAATATCTATATCTTTAAGATTATTTTGTTATTTTTTTCATAATACATAGTATTTTATACCACATTATTTAATTTTTATCAATAATAAAAAAATTAAATATAATTTTTTACAATAATTTCAAAATTGTCTTATATAACATATCAACTTAATTAAGTCTATTTATACTTCTAAAAATAGTTATTTTTCTTTTGTATTTAGCCTTTACTACTTCATAAACTCCTATTTATTTTTATATATACAAAAAAACATGTACATTATTTTTCACAATAGTTTTGTTTTAAATAGTACATGTTTTATTTTTTTTTATTTTTTTATATTAATTAATAACTTAGTATTTTTATATATTCCATATCCTAAACATAGATATATAACAAAATACCATATATTTCTTAATATTATAATTTTACTATGTAATGAAAAAATAGTATTAAATATATTATAAATATCTCTATTGGCTTTTATTTCAATAATAATATTATTA # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAGACACCTTTAAAATAACATACTTCTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-85.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 62082-63639 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMDY01000002.1 Oceanivirga salmonicida strain D4A NODE_2_length_98471_cov_121.558, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 62082 36 100.0 38 .................................... ATTTTTTCTAAATCAATTTTATTATATTTAATTGGTTT 62156 36 100.0 35 .................................... TCATCAATATCGTTTATATAACTTTTTAAATCGTC 62227 36 100.0 35 .................................... ATAACGTCCATTTGTTAATAGATTATAATTATATT 62298 36 100.0 35 .................................... ACGAAATTAACTGTTGTTTCGAACCCTCTTGTTGT 62369 36 97.2 39 .........T.......................... CTTCATCAACTTCTTTTAAATATTCATAAATCATTCCAT 62444 36 94.4 37 .........T.......A.................. AGTTCTATTAAATATTTTTCTACTTTATTCATTTTTA 62517 36 94.4 38 ...............T.A.................. TTTGTGCAATTCCTAAAACAAGGAATACTGTACCAAAA 62591 36 94.4 37 .........T.......A.................. TCAATATCTTCGACCATATCTCTAAAATATTCTAAAT 62664 36 97.2 36 .................A.................. AATCTAACAGTTTTAAATTGATTGATTGCTACATTT 62736 36 100.0 38 .................................... ATACTATCTATTTTTTTCGTGAAATTCTCTTTATCTAA 62810 36 100.0 38 .................................... TTTTCTTTAAGACCTTGCAATGAACATATATAATTATT 62884 36 100.0 37 .................................... TGAAAATAAATTAGAAGATAATGTTAAATATTGATTT 62957 36 97.2 37 .................A.................. AATTATATATCTTGTGCAAATGATACTAATTTGCTTT 63030 36 97.2 39 .................A.................. ACTATCTCATAACCGTTATCTCTTAATATTTCTACCATT 63105 36 94.4 36 .................A..A............... ACCTTAATTTCAATTGCTTATCACTTATTATTTTTT 63177 36 94.4 25 ...........G........A............... ATGCGTTATGTTGCTCGCACAATTT Deletion [63238] 63238 36 77.8 36 AC..CCT.T..G.....A.................. AAAATTAGTGTGTCTTGACAGCTTCCACAAGCCAGT 63310 36 100.0 35 .................................... GATTAAAATGTATTGGTCATACTTTCTAATTTTTT 63381 36 94.4 38 ..........G......T.................. ATTGTTACAAATGCCATTCCCAAAATACCTAATACTCC 63455 36 94.4 36 .................T..A............... TTAGTTGCTATTTTTTGGAAGTCGGTCAAACTTTTT 63527 36 97.2 38 ..........................A......... TTTATAGAGTATAAGATGGGCATATCTTGTAAAGTTTT 63601 35 86.1 0 .........A................AA...-...G | AGGT [63626] ========== ====== ====== ====== ==================================== ======================================= ================== 22 36 95.9 36 GTAAGAATGGTATTCCACTAGAATAAGGATTGAAAC # Left flank : TATAATGTCGTTTAAACAAGATTTAAATTTGTTAATGTCCATAAGAAATAATGTTAATAAATTGGATTTTGATGGAGAAATTGTAGAAATTAAAAGAAAGAATATTGAAATTAAAGAATATGATTTAAAATATTTGAGAAATGATTTTATTGAATATACATTTTTATCAACATATTTACCATTTAATCAAGTAAATTACGAAAAATATAAAAATGGCCTGTATTCATTAGAAAAAGCAATAACGAATAATCTTTTAGAATTTTTAAAAGGAGTTAAATATTTTTTGGAAGAAAATGAAAGAATTATAGTCAGTGATATAAATATAAAAAGTGAAAAAGTAGTTAAAAATAAAAATATAGGCTTTAATGGTTATAAACTAAGTTTTAAAACAAATTTAGATTTGCCTAATTACATTTCGCTAGGAAAAAGAAAAAGTATAGGATATGGAGTTATAAAAAAAGTAAAAAGTCAATAAAATAAGCATGTATAACAAAACACGT # Right flank : GGAGGAAATAATAATGGAATTAATTGTAGATACTATTGGTACAAGAGTTAGAATTAAAAATAGAATGATAATAGTTCAAAATGAATATGATTATAGAGAATTTTCTCCCTTTAAATTAGATAAGATTATATTATCATCTAAAACTTCAATTTCTGGTGAAGTTATATCATCTTGTAAGAAAAATATGATTGATTTGATATTTTTAGATGAATATAATTACCCTTGCGCAAGATTATGGAATAATAAGTTTGGTTCTATATCAACAATAAGGAGAAATCAAATGGAGTTTTTTAAGATGAATATGTCATATGAATTTATAAAAAAATGGCAAATCCAAAAATTTAATTTATATTTAAAATTGATTGATAGTGGTATAGAGAAAAATAAAATATTAAAGTATATATCTTTAATTGAAAAAGTTGATACAAATTTAAGTTTAAGGGAATTTAGAAAAGAAATTTTAAAATATGAGTCTAATGCAAGTAAAATGTTTTTTAAGG # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:0, 3:3, 4:0.82, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAGAATGGTATTCCACTAGAATAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.50,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA //