Array 1 29375-23244 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB913025.1 Methylovulum miyakonense HT12 MetmiDRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 29374 29 100.0 32 ............................. CGTTTTTTATGCCACAAACCGCCCTATATCGC 29313 29 100.0 32 ............................. TTTTGTAATTAATGTCCTCAAATGAAACCGCC 29252 29 100.0 32 ............................. ATTTGGCATGCCCGCTAGGCCAGTTACATTGT 29191 29 100.0 32 ............................. CTCTTGAAATTGAGCGGCTCAGGCAAGCTACA 29130 29 100.0 32 ............................. CTATAAACGCGACGGCTGTAAAAACTTCACGA 29069 29 100.0 32 ............................. TATGTTTTACCGGTTGCACTCTCACTAGCATC 29008 29 100.0 32 ............................. ACTTAGTGCTGTATCAGTTACTCAACATCAAT 28947 29 100.0 32 ............................. CAGACATAGAGCGTAAGGTATTGTCCACTGGT 28886 29 100.0 32 ............................. TACATCTCTATCCACCCTTCTATGCAAGGCAT 28825 29 100.0 32 ............................. TTCGCCACACTGCGACGTGTATAACCTGTACC 28764 29 100.0 32 ............................. CCCTTACGATTATCAAGTTAATGATGAACTGT 28703 29 100.0 32 ............................. TTTGCCACACTTCGACGTGTGTAACCTGTACC 28642 29 100.0 32 ............................. CATGATTAATTTACCGGATGTTATCGAGGTAT 28581 29 100.0 32 ............................. TACGGATAAAGCCTAATATCACTTCATGGGTA 28520 29 100.0 32 ............................. CTTGCATTATCGGCAGTCATGGGCGGCGGGCG 28459 29 100.0 32 ............................. GCTTGCGCCTAAATCCATATAGGATAAATCCC 28398 29 100.0 32 ............................. CATGCTTGGTGGCATATCAGCGTAATTGTCCG 28337 29 100.0 32 ............................. GGATCGACGATACCCCCAAACGCAGTTTTTAT 28276 29 100.0 32 ............................. ATATAAAAAAATATTTGACCTGTTCTTGTTTG 28215 29 100.0 32 ............................. CCTCTTCAATTCCATATTCCATAGCCACATGG 28154 29 100.0 32 ............................. GCTGGATCGAGCGATTCTTCAACACGATGAAA 28093 29 100.0 32 ............................. TTGGGCTAATGCTATTACTGGGACATCAAACT 28032 29 100.0 32 ............................. TCAATCGACATGGCCTTTGTGTTTTCACTGCA 27971 29 100.0 32 ............................. GTTTCCCTGTTATTCGTTCAACCATCAAATGC 27910 29 100.0 32 ............................. TCTAGCATAATTTACTCCAGAAAATGCGCGGG 27849 29 100.0 32 ............................. GGTTAATCACTCAAATTACATACACTACGAAC 27788 29 100.0 32 ............................. CAACCAGGAGAGAACTGGCAACGGCCTCTTTT 27727 29 100.0 32 ............................. CCTACCGCAAATAACTCATGATATGAATAATA 27666 29 100.0 32 ............................. TGGACGCGTTGCGCAATGAAGAGCGCAACCTC 27605 29 100.0 32 ............................. TAACGTCACCACCGCCTACGACACGGCGGCGG 27544 29 100.0 32 ............................. TAATAGGGTTTTTCCAGTCCTCATTTATTGAG 27483 29 100.0 32 ............................. ATAGCATGGCCTATACGGAATGTGCTGTACTA 27422 29 100.0 32 ............................. TAATCCGAAAAAATACGGAAAACAGCGAACCC 27361 29 100.0 32 ............................. CCGGTTTAACTGCCCAGCAAATTCAAACCGCT 27300 29 100.0 32 ............................. TAGGGCGCACTTTTTTATAAAACGAGGACGTG 27239 29 96.6 32 ............................A GTTTCATCATAATCTCCTAATGTTGGGCCTCC 27178 29 100.0 32 ............................. TCATCACGAAAGACATACTTCGAAGGCAATTC 27117 29 100.0 32 ............................. TCAACGAAATTTTATCCGGTTCAGCATCGGCA 27056 29 100.0 32 ............................. TGAATCATTTGGCAATTACCGCGCCATAAACT 26995 29 100.0 32 ............................. CCATTAGGACGTGGATACCGGACGTGACTACA 26934 29 100.0 32 ............................. CGGAGACGCTGGCTGATGCGGGCTTTACCTTT 26873 29 100.0 32 ............................. CGGCTTTATTGACTGGCGGCTGGGGTTTCTGC 26812 29 100.0 32 ............................. ACTATAAATATCGGGCGATGTTATCTGAAATA 26751 29 100.0 32 ............................. TGGCGGAAAATGGAAAGCCAAAACGCGCGGCT 26690 29 100.0 32 ............................. TTTTCGAGGCATTGGGATATAATAAACCCGAT 26629 29 100.0 32 ............................. CTTTGCGGATCGCTGAAATAAAAAAGACGCTT 26568 29 100.0 32 ............................. AAATGGACGGCTGGAAGCGCAGCAAAAAAGAA 26507 29 100.0 32 ............................. CAAGTATCAAGTCGCTAGTCAAACCTTTAAAT 26446 29 100.0 32 ............................. CCAGCTTGTGTACCTGCTTGCCGGATGCGATA 26385 29 100.0 32 ............................. AGAATGGCCAGCTCGCCATCGCCGGTGGCTGG 26324 29 100.0 32 ............................. ATCGTCCCGGCGGTCAGGCCGTTGCTGGAAAA 26263 29 100.0 32 ............................. CCGCATGAGTTTGAACAGTTTGCCCATAAAAC 26202 29 100.0 32 ............................. CCGCCGATGCCTGTACCCACCGCCATCAAGCC 26141 29 100.0 32 ............................. TTACCCCACAAATTTCCGCTATTTCAGTCGAG 26080 29 100.0 32 ............................. GGAATATTAACAGACTGATTATCAATGTCCCT 26019 29 100.0 32 ............................. TCACGCATTAACCGCGCGTCATCCTGTGTGAA 25958 29 100.0 32 ............................. GAAATGTGAAACGAGTGCTGTTGCAATAGTTC 25897 29 100.0 32 ............................. CGCAATCGTGAGCGCAGTTGATATTAAATTAC 25836 29 100.0 32 ............................. CCTGTGTACAAAAATAGAAACAGCTTTAAAGT 25775 29 100.0 32 ............................. CGTAACAGTGATATCGAGTTGCCACTCACCCA 25714 29 100.0 32 ............................. CCAACGGCAAACGCTGGGTTATTACCGAGCGC 25653 29 100.0 32 ............................. ACGTCAAAACCGAACTGGCCGCCGCGCTGGAT 25592 29 100.0 32 ............................. AGGCCGAGCGGGAGGCCTGGGAATTTTACCAA 25531 29 96.6 32 ............................C TGTTCCAGACTAACACCGGCCAATAGGTTCAG 25470 29 100.0 32 ............................. GCCGTGACCGCGTGGCCACCACTGCCCGGCGA 25409 29 100.0 32 ............................. GCCGTGACCGCGTGGCCACCACTGCCCGGCGA 25348 29 100.0 32 ............................. TGACGTTGGCAAAAAAAAGCGGTGTCAGTCAA 25287 29 100.0 32 ............................. CTATGTGCTTGATATTGTTATAGGTTTCATGG 25226 29 100.0 32 ............................. GTATCAGGTAACAATGCTACACAACATAGGCC 25165 29 100.0 32 ............................. CATACCGCACACACTTAGAGATACATAATCAT 25104 29 100.0 32 ............................. CAGAAAGCCGCACGCTCAGGCAACACGGCTCC 25043 29 100.0 32 ............................. GCATTAGGGTTTCCCCATTTTTTTGGTGGCGA 24982 29 100.0 32 ............................. TCGGTGGGCATTGCAGGGTTTGGTGGCGCGAT 24921 29 100.0 32 ............................. CTCTTATCAGCAACGTAGAGGACTTAAATATC 24860 29 100.0 32 ............................. GCGATATGGAAACTGCGCTCGACAATTGGCGC 24799 29 100.0 32 ............................. GCCGGGATGCCGTTCATGCGCGACTGGCGGCG 24738 29 100.0 33 ............................. CCTAATCCCGTTTACGCCGCCCACCACGCCAAC 24676 29 100.0 32 ............................. ACTCCAACGGGCGTATCAGCGAAACGCGGCAA 24615 29 100.0 32 ............................. GCTTTGAGTGACAGCTTAGCATCGACTTCGCC 24554 29 100.0 32 ............................. GTTTGTGTCGCGTCAGCATCCACATCGCCAGT 24493 29 100.0 32 ............................. GCATAGCCGTTACGCTTCACGGCTTCCAGTGC 24432 29 100.0 32 ............................. TTGAGCTGGACATGATGGACAACCGCATTGCC 24371 29 100.0 32 ............................. TTCCGGCAGATGTTTTGACACCTCGACCAAAC 24310 29 100.0 32 ............................. CTGCTGGCCAAACTGTCGGTACCGCCGCCGCC 24249 29 100.0 32 ............................. CGGTCGCTATTGCACTCAGCCGAATCGCTGAA 24188 29 100.0 32 ............................. AGCTGGAAACGCAAGTCCATCGTGCCGTGGCC 24127 29 100.0 32 ............................. TCGATTTTTAGCGCCATGCCACCCTCGTCGGT 24066 29 100.0 32 ............................. CCATCATGTTTATCGTCAGCCAGTGGGAAGTT 24005 29 100.0 32 ............................. CATCGAGGGAGGCGCCAAGCTATTGCGCGAAT 23944 29 100.0 32 ............................. AAACATACGCGCTTGCGCCTGTTGCGCTAACC 23883 29 100.0 32 ............................. CGCAAAATGCTGCGCAAGCCAACCTGCTTAAA 23822 29 100.0 32 ............................. CGCAAAATGCTGCGCAAGCCAACCTGCTTAAA 23761 29 100.0 32 ............................. ACTCAAAAAGCCTTTGCAGCTTTTAAAAAAAA 23700 29 100.0 32 ............................. GCCGGTGACTTAATGTGCAGTGAATTGGTGCT 23639 29 100.0 32 ............................. CGGGGCGCAAGGGTTGCGGCAAGTCTGCTGCT 23578 29 96.6 32 ..........G.................. TCTTGCTCAGAAGAAATATCGTGCAATGGCAT 23517 29 96.6 33 ............................A TGAAACAGGGCAAGCGCAAGCTGCCCAGCTATG 23455 29 100.0 32 ............................. TGTGCATCAATTGTTTTTTAGTCAGCATATCC 23394 29 100.0 32 ............................. TGAAACATAAAAATAAAAACATAAAACATACT 23333 29 93.1 32 ............GT............... GACGACCCGATTTCCCGCGCCAAAAAGACCAT 23272 29 89.7 0 .................A.......T..T | ========== ====== ====== ====== ============================= ================================= ================== 101 29 99.7 32 GTGTTCCCCACGACCGTGGGGATGAACCG # Left flank : AATCCTCAGAAAAATCATCCCCACGATTGAAGAGGTGCTGGCGGCAGGTGAACTGGCTATCCCGACGCCGTTTGAAGAGTCCATAGCCCCCGCCATCCCCAACCCGGAGAACATCGGCGATGTTGGTCATCGTAGTTGAAAATGTCCCGCCACGCTTGCGCGGTAGGCTGGCCGTTTGGCTGATTGAAATCCGTGCCGGCGTTTATCTCGGTGATTTGTCGGTTAAGGTGCGTGAGATGATCTGGTCGCAAGTTGAAGACGGGATTGAAGAGGGCAACGCTGTGATGGCATGGTCAACCAACACCGAATCAGGCTTTGATTTTAAAACCTTAGGCAAAAACCGCCGCCTGCCCGTGGAGCTGGATGGCCTGAAACTGGTCTCGTTTTATCCCATTGAAGATGAGGATAATGCGGTTCTTTAACGACCTGGAAAAGGCCTAATAATCGGTGGAAAATTAGCAGGGCTATTTTTTCTTATCTAACAATCGGTTAAGATAAGT # Right flank : TTTGAGCTACCTAATAGGCACTAAAAACGTTACGGAACGGGTAACAAACCCGTTCCAGCCTTTTTATCTTGACGCAGGTTGATGCCAGCAAACCCAAAGTTTCATAAGTTTTTGATTATCTGTTATTTATATGCGCTGGCCCTGATGTTTCCATCATGCGGCACGCAACAGGGCAGGGCGGCTAATCACCGCAGCTTTCTTGCCGCCTGGAAGGGAGGTGCTTCCAGGCGTTTGGGGATTTACTCGGACAGGCGTTTGGTGATGCGCTGGTAGGCGTCTTTTAGCTCTTCGCCGACAATTTTGGCTTTGGCGATATATTCCTCGGACGTTTCTATCGAATCGTCGGCGATTTCAACGGCTTTGTTTTTGACTTGCCGCCACGTTTTTTCGGCTTCTTCGAATTCATCCTTGGCGTCCATTGACGCCAGGTGTAGCTTTAACTGGATTTCCTCACGAGCTGAATCCAAATTATCCAATAAATTTTCAAATTCTTGTTTCAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGACCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3577019-3576719 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB913025.1 Methylovulum miyakonense HT12 MetmiDRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 3577018 36 100.0 30 .................................... CCCGGTGGGTACGGTGATCCAAACGGTGAC 3576952 36 100.0 30 .................................... CGTATTGTTCGCGTAAATGCGCATCATAGA 3576886 36 100.0 30 .................................... ATCACCTAATTTTAATGCGCTGGCCTCGGC 3576820 36 100.0 30 .................................... AAAATAACCCCCGGGCAATTCTGCCGTGAC 3576754 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 100.0 30 GTTGTGATTTGTGGGTAAGCCTTAGTCGGTTACACT # Left flank : GCCGCCGCTTTTAAGCAAGCCCTATGCGGAAGCGGTTGCCAAACGACATGAAATTACGGGTCGAGCAAGCGGACGCTTTTTTTATCCTGGCGTGACGGTGTCCTGCTCGGCGCAAGACCACCACGCCGGGCTTTATTTGTCCGAACCCAAACTGATTGTCGAAGTCTTGTCCGATGCCACCGCCGCATTTGACCGGGGCGGTAAATTCGCCGCTTATCGCAGTCTGCCGTCGTTACAAGAATACGTCATCGTCGACATCGCCGACCGCTGCGTGGAATGCTTCCGCCGCACTACCGACAATGGCTGGTTGTTGCAGGATTACATCGGCGAACAGGTTTGTCAGTTTACCAGCATAGGAGTCTCGATGGCGTTGGTTGAGGTTTTTGAAGATGTGGTGGTTGAAGGCGGGGATGCTGTGGGGTAGCCAGAGCAATGGCGCTATACCCAAAAGCCGTCTTTCCGGCACCCGCTAGAACGTGATAGCAAATCCCTACCGCCCC # Right flank : ACCCCATCAATAACCCACTGAAATATAGTGAGTAACCCCCGCTTTTACTGTCAAAAAAGCGAGAGTTGCTCAGGGGGGGGGTTCAATAGGTCTGCGCTTTTTCCCATAAAACACCTCAATTTTTCCAAACTGCTTGTCTGTTATTTTTACAATCCGCACTTCGCCGTCCGGCGGCAACTTCTGCTTCACCCTTTTTACATGCACCTTGGCGTTTTCATCGCTGCTGCTATGGCGCATGTAAACCGAATATTGCATCATTGTATAACCATCATCCAACAAAAAGCCCCTAAATTTGGTGTATTGCTTGCGGGCTTGCTTGGTGTCGGTCGGCAAATCAAACAAAACGATAATCCACATGGAATTTAAGCCGCCAAAGCTCATAACAGTAGTTCACCCCATTCAGGGTAGTTGATTTTCTGATTTTTATCGTCAAACGCCCGCTTAATGTCCGCCATCAGATAATGGCTGGCAACCATCAGTGGCATGGTTTGTTGGTTCCA # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGTGGGTAAGCCTTAGTCGGTTACACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.30,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 3 3730432-3724913 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB913025.1 Methylovulum miyakonense HT12 MetmiDRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3730431 29 100.0 32 ............................. AAAAGCTATTTGGGCTAACTAAATGCGTAAGG 3730370 29 100.0 32 ............................. TTGGTCTTTTGGGTACGCTGTTGTATCGCCTT 3730309 29 100.0 32 ............................. AGTTTGTGCATAGTGAGGCAATTGTTACCAAT 3730248 29 100.0 32 ............................. CGTTGCCGCCGCCGTCGCCTTTTCGGCCACCC 3730187 29 100.0 32 ............................. CAATTAATGCGTCAGCAGTGACGTTAGTGATT 3730126 29 100.0 32 ............................. CAGCAAACGGTGGTCGTGCTCGGGAATACGTG 3730065 29 100.0 32 ............................. TCTCGTTAATCTCTGATTGAACATCGGCGATA 3730004 29 100.0 32 ............................. CAAATCGGCGGAATAAACTATGTCCCTGCTGT 3729943 29 100.0 32 ............................. TTTATGGATTGCATAAAAAATCAATTGGTGGT 3729882 29 100.0 32 ............................. CTCGCGCATCAAATCTTCATCGCTCAATGATG 3729821 29 100.0 32 ............................. TTCCGGCGTGTCTTCTTTGTTTACCGAAATTC 3729760 29 100.0 32 ............................. CCAATTAATGCATATTTTAAAACAAAACCCAT 3729699 29 100.0 32 ............................. TTATAGAACTGGTGACCGAAAACCAAAAAATC 3729638 29 100.0 32 ............................. AAAAAATGCTTGACATGCTGGGCGTCTGTTTT 3729577 29 100.0 32 ............................. AACGAATGGGCAAACCAACTTGAAGCTTGGGC 3729516 29 100.0 32 ............................. GCGGTTTTGGAACTGCACGAAGGCGACCACCA 3729455 29 100.0 32 ............................. GCGCTTTAACTGCCCAGCAAATTCAAACCGCT 3729394 29 100.0 32 ............................. TAATCCGAAAAAATACGGAAAACAGCGAACCC 3729333 29 100.0 32 ............................. TGACTCGAAAAATCGAGTTGGCACGGAAAATA 3729272 29 100.0 32 ............................. GCGGACTTGATGAAACGACGCCCGGTGAAGAT 3729211 29 100.0 32 ............................. TTTGAGTGACACCGTCGTCACCCTAGCCCGTT 3729150 29 100.0 32 ............................. CCGCTAACGGGCATCACGCTAAAAAGCCAAAT 3729089 29 100.0 32 ............................. CTGCTCAGGGCGTTATGGCTGGAGATGCACAG 3729028 29 100.0 32 ............................. TCTATCTGATGAGTACAGCATTAATTGTGCTG 3728967 29 100.0 32 ............................. CTCGTCGGAATAGCCTTTGATAAAAAAATTTC 3728906 29 100.0 32 ............................. TCTGGGTCATGCGTTTTAACTATTAGCGAGAG 3728845 29 100.0 32 ............................. CCGCCCTTTTATTCATCCAATTATCAACCAAT 3728784 29 100.0 32 ............................. CTTTTTTGTATCTCCAGGGTTTTAGTCTGGAA 3728723 29 100.0 32 ............................. CCGCACAACATCGCGGCGATTGAGCAATTTCG 3728662 29 100.0 32 ............................. CGGACCATCTTCCCGATTCCGGGAAAATGGTA 3728601 29 100.0 32 ............................. CCGCCTGACACCACGTCAACACCGCCGCGCCA 3728540 29 100.0 32 ............................. CGTACATCATCAATCACTACCCGTACCTCATC 3728479 29 100.0 32 ............................. ACTCAGAACAGCGCGTGGTAATTTTGGATACA 3728418 29 100.0 32 ............................. TCAATCTTTTGGAAAAAGCCAGCAACACTGGG 3728357 29 100.0 32 ............................. ACAGCGAGGGATTCACCCTAGATTCTGGTGAA 3728296 29 100.0 32 ............................. TTTTTATCGGCATCGGCATCTTCTTCATCGCC 3728235 29 100.0 32 ............................. TATCCATCATCATCGTAACCGCGCCATTTATA 3728174 29 100.0 32 ............................. GTTACAGAGCCCTGGGCTTCGCCACCTTTGCC 3728113 29 100.0 32 ............................. TAATAGGGGGCGTAGCATCATGAATACAGTCA 3728052 29 100.0 32 ............................. CTGACGTTGTCCGCTAGGGACTATTACGCGGA 3727991 29 100.0 32 ............................. TCACCCGCCCGCTGGTGGGGTCGTGACGGATA 3727930 29 100.0 32 ............................. GCCTGATCAATCAGCATTTTACTAAGAATGGG 3727869 29 100.0 32 ............................. GATCTGGTCAGCCCGGCGCGGATGATATAGGG 3727808 29 100.0 32 ............................. TGACTCGAAAAATGGGTTTGGCACGGAAAATA 3727747 29 100.0 32 ............................. GCCGCGTTGTCGTTACTCAGTGTCGGGGCGAC 3727686 29 100.0 32 ............................. CGGGAAAAAATAGCCTTGGAATTAGGGCAAAC 3727625 29 100.0 32 ............................. TTTTACCTCACGAAAAAACGGCAGGGCCACTT 3727564 29 100.0 32 ............................. ACGGCTTTATCTACATCGACACGGCTTCTTCG 3727503 29 100.0 32 ............................. AAAACCCATTACCAACCACGTTATCCAGGTTG 3727442 29 100.0 32 ............................. TCGGCACACCCACTCACCGCATGACTGTATTA 3727381 29 100.0 32 ............................. AATTGTACGACGAAAAATATGCAATCTTAGAT 3727320 29 100.0 32 ............................. GTCAGCGTAATATTTTTTGTGCCAACAGCTGG 3727259 29 100.0 32 ............................. CCATGAACGCTGTCGCGCCACTGATTCCCCCC 3727198 29 100.0 32 ............................. CCATTTGATTTGGGCTTCCGGTATTTCTTGCC 3727137 29 100.0 32 ............................. ATTGTGAGCAGATCGTGAGCGCGGGAGTTGAG 3727076 29 100.0 32 ............................. CCTGGAAACGTGATTGTTGGCGGATGCGGGAA 3727015 29 100.0 32 ............................. AAGAACAGCCGCCTGAAGAAAATCAAGGTGTA 3726954 29 100.0 32 ............................. GAGGTGCGGTAACGCAAACATTTGCCGTAATA 3726893 29 100.0 32 ............................. AAAACCCTCGATGATTTCCTGCTGACCATTAA 3726832 29 100.0 32 ............................. CTATGAACGATGGGATTGCCAACTGCAATTGG 3726771 29 100.0 32 ............................. TGCTTAACTATTATGGACTTTTTACCCGTTTA 3726710 29 100.0 32 ............................. CGGATCGGACAACACCAGCCTGGCCTCATCCT 3726649 29 100.0 32 ............................. CACTGGCGGCTTAAATGCCGGGGCATCGCCCA 3726588 29 100.0 32 ............................. TCATGGCTAGATGGCCGAGTCTTCAAACTCGC 3726527 29 100.0 32 ............................. CCATTGGCTTAACAGGTTCGGTTATTTGAAAA 3726466 29 100.0 32 ............................. GCCGGACAGTTGGGCTTGGAAGCGTACCTGCA 3726405 29 100.0 32 ............................. CCACCCGGCTTAATAGGTACGGCTATTTGAAA 3726344 29 100.0 32 ............................. GCAACGCATTGGATGGATATTCCAGATGTTGG 3726283 29 100.0 32 ............................. TTCGCCGGGACTGACGCAATAGTGTTATGAGG 3726222 29 100.0 32 ............................. CTTTTTGAAACAGGGCGCTGACTTTGTGAACA 3726161 29 100.0 32 ............................. ATGGCGGCTTAAATGCAAGCTTGCCTAAACGT 3726100 29 100.0 32 ............................. CTTGGTTGCATAGCATCGCTAAAATCTTTGAT 3726039 29 100.0 32 ............................. TTATTGATGCGTATAGAGTGGCAATGTTGGCA 3725978 29 100.0 32 ............................. GCGAGAGCAGAATATTGCCACAGCAAACAGCA 3725917 29 100.0 32 ............................. GCGAGAGCAGAATATTGCCACAGCAAACAGCA 3725856 29 100.0 32 ............................. CACAATCAGGCAATACCTGTTTCTCTGTTCAT 3725795 29 100.0 32 ............................. TCATTGGCTAATTTTGTTCGTGCTAGTTGGGA 3725734 29 100.0 32 ............................. GATTGACGGCTGTATTAATCAACGAAGAAAGC 3725673 29 100.0 32 ............................. CCATAAAAACCCCCCGCCCTACTTTAACAGTA 3725612 29 100.0 32 ............................. GGACAACAGAAAATTAGGATAAAAATTCAAAA 3725551 29 100.0 32 ............................. CCCAGTACGATATAGTGCGGCAATACAAAATA 3725490 29 100.0 32 ............................. TCACCAGATATGGCCGCGCGAATATCCCGACC 3725429 29 100.0 32 ............................. ACCTCAAACAGCTCGGACTGTACCAGCGAAAT 3725368 29 100.0 32 ............................. TGCTGAACCAGGTCGGCCAGAGTGTTCAGGGC 3725307 29 100.0 32 ............................. TGTTTGAACCAGGCGGGGGCCTTGTCTTCTGA 3725246 29 96.6 32 ..........T.................. CACCGCCTTTTGTTGCTTTGACACGGTCAACT 3725185 29 96.6 32 ....................A........ ATTGAGGCCAAAAAAGCAGCTCCAGCAGCTCC 3725124 29 96.6 32 ...............A............. AAACCGCCCACCCGTAGGGCTCATCTTCGCGG 3725063 29 100.0 32 ............................. GCCTGGGCTGATCAAATCAAAAAGGTCAGTTT 3725002 29 100.0 32 ............................. AATACATCGCTAAACGCAAGTATGGCAGCCGT 3724941 29 86.2 0 ...............A........TGT.. | ========== ====== ====== ====== ============================= ================================ ================== 91 29 99.7 32 GCGTTCCCCACGACCGTGGGGATGAACCG # Left flank : GATGCTTCGGCTGAAAAATACTTGTCGGTGCGCTACAACGACCTGCTTGCACCGATGATTAAGGCCATCCAGGAGCAGGATAAAAAGATACATGACCAGGAAGAAAAAATGCAGGGCCAACAAAAAACCATTACGACGCAACAACAAGCGTTGGCATCCCAGCAAGAAATAAATATGGCTTTGCTAAAAAGAATTGAAGCCTTGGAGAATAAATAAGGCCCAATATGGGTTTCAGGGACTTCTTGAATGATGACGGCTAAAGCTTCATGGATGCCTGCTCCCAAGAGGGACTGGACACTTTAAAAGCAAGCGCACGGCAATTTTGGGGAAATGTTGTGTAGATACTGATGCCCGTGGAGCTAGATGGCCTGAAACGGGTCTCGTTTTATCCCGTTGAAGATGAGGATAATGTGGCTCTTTAACAACTTGGAAAAGGCCTAATAACCGGTGGAAAATTAGCCGGGCTATTTCTGCTTATCTAACAATCGGTTAATATAAGT # Right flank : GTTGAAAGTGCATTGGCAAAGCTTCATAGGTGCTAAGCATAAAGTTGGCCGGGTGTTTGTTAGGACGGGTTTGTGACCCGTTCCGTGACGTTTTAGCACTTATAAATACCTTGAAACCTTAAGCACCAGTATCTTGCCGAAGGATTGCAGGCGGACTTCTTCCTCTAGCACCCATCCTGATTGCCCGAAAAGTGCCTGCCATTCAGCAAGTGTCCTTTCCCTACCTTGGGTGGCCATGAACATCTGCATATCAAAGGCTGCACTGGCAAAATCAGCTTTCGATCCGGCAACGACCATTTCCATCAGCGCAATGCGGGCGCCAGTGCCTGCACTGGCGACATTCAGGTTGCGCAGCACTTTCACGCAGTCCGCGTCACCCATGCCGTGCAGGATGGCGCTTAATAAATAAATGTCCTTATCGTCTTTGGCGGCGGGAACCGATTCGAGCATGTCCCCGGCTTGGAAAGACAAGCGGGACAGCAGGTCTGGCGGCTCTTTGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCACGACCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //