Array 1 60972-62220 **** Predicted by CRISPRDetect 2.4 *** >NZ_QAFX01000077.1 Escherichia coli strain KG-23 NODE_26_length_62417_cov_6.47563_ID_51, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 60972 29 100.0 32 ............................. AGATCACACTTACCCTGCAAAATCTTAATGGG 61033 29 100.0 32 ............................. ACAATCACATATACGACGCGAGACGGAGATCG 61094 29 100.0 32 ............................. CTACCGGGACCGTTGGTTTCCACCATGACCAG 61155 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 61216 29 100.0 32 ............................. CTGACGGAAAGCCAATTCAACGTAATCTCAGG 61277 29 100.0 32 ............................. AATGGCGTTTATTTCTCCCATGTAGTGAGCTG 61338 29 100.0 32 ............................. ATAACAACGACACTCCGGCATATATAAAGGCA 61399 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 61460 29 100.0 32 ............................. CCAAAATCCCCTAGGAATCCCAGCACGGTGCG 61521 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 61582 29 100.0 32 ............................. TCTTCAACGGTTTTGATTTCAAGTTTTTTGAG 61643 29 100.0 32 ............................. CGTGCCGCTCTTGAGATCGGCGGAAAGTTTAT 61704 29 100.0 32 ............................. CCAGTGGAGCCGCCGCGAATTTACACACGATT 61765 29 100.0 32 ............................. GCGAGGGGCAGCCGTTCGCGCTGCATGTTGAT 61826 29 96.6 32 ..A.......................... AAAAAACAGTGGTACTACCGCCCCGCCGAACA 61887 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 61948 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 62009 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 62070 29 93.1 32 .A.C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 62131 29 93.1 32 .A........T.................. GACGCCGCCGCTGCGAAGCCGTTTCCGATGTT 62192 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTATGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 25512-27187 **** Predicted by CRISPRDetect 2.4 *** >NZ_QAFX01000100.1 Escherichia coli strain KG-23 NODE_8_length_164022_cov_6.29649_ID_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 25512 29 96.6 32 ............C................ GTCAACTGGCACCACAAAATGATGGCGTCGAA 25573 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 25634 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 25695 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 25756 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 25817 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 25878 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 25939 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 26000 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 26061 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 26122 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 26183 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 26244 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 26305 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 26366 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 26427 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 26488 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 26549 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 26610 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 26671 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 26732 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 26793 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 26854 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 26915 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 26976 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 27037 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 27098 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 27159 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 28 29 98.4 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //