Array 1 359-59 **** Predicted by CRISPRDetect 2.4 *** >NZ_CMZJ01000138.1 Neisseria meningitidis strain NM2701, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 358 36 100.0 30 .................................... TTAAAATAATAACCCAATACACGATGTTAA 292 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 226 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 160 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCA 94 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 100.0 30 GGTTTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : CCCTTTCTCATTTCGCAGTGCTACAATCTTTAACTTTGACCGTGTGCAATCCAGTT # Right flank : TTTTGGTAAAGGTTTCTGTTGCGACCCGAATGTTGTAGCTCCCTTTCTCATTTCGCAGT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,-0.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 1 406-1297 **** Predicted by CRISPRDetect 2.4 *** >NZ_CMZJ01000026.1 Neisseria meningitidis strain NM2701, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 406 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 472 36 100.0 30 .................................... CACCCACGGCGGAAACCATTGCCACAAAAC 538 36 97.2 30 .G.................................. CCTATGCCTGTTATTGTTTTCAGCCTTTTG 604 36 97.2 30 ....C............................... CTGATGCAGGCTGCTCCGTCATCGTCTGCA 670 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 736 36 97.2 30 ....C............................... CTACGTCTATGGTGTCCTTTGAGATGTCCA 802 36 97.2 30 ....G............................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 868 36 97.2 30 ....C............................... CGTATTCGTCGATGATGGAAACTCGAGCAT 934 36 100.0 29 .................................... CCGGCCGCTTTATTTCTGCCATATCGACG 999 35 97.2 30 ...........................-........ CTAAAATAATAACCCAATACACGATGTTAA 1064 36 100.0 30 .................................... CATAACAACCATTTTGTTATTTCGATTTTT 1130 35 97.2 31 ...........................-........ CCCCGACCATTGACGGAAAAACCCGAAAGCA 1196 36 100.0 30 .................................... TTATGCCGTTTTCATCCGGCTTGAACATTT 1262 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 14 36 98.2 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTGG # Right flank : TACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : GTTGCAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [4-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA //