Array 1 5666-5293 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB946316.1 Enterococcus haemoperoxidus ATCC BAA-382 acvJN-supercont1.3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== =================================== ================== 5665 34 94.1 33 ................................TC CCCATTTCATAAAATAATATCTGTAACAAATTG 5598 34 97.1 32 .................................G TAATATCAATTGATAGATTACCATTTTTTGAG 5532 34 100.0 33 .................................. AAACTGATCCTCCTGGTATGATCCAACAAATTG 5465 34 100.0 35 .................................. CCTGAATTAACTATTATTTTAAACCATACGCTGAG 5396 34 100.0 34 .................................. AAACTGATCCTCCTGGAGAATTTACGTGAACTGG 5328 34 73.5 0 .................TG.A.C....AC..CGT | TA [5303] ========== ====== ====== ====== ================================== =================================== ================== 6 34 94.1 34 TCTAGCTCTGTTTAGAGCTAGTGGATTGAAATAA # Left flank : AGATGGTTATCCACCGTTTTTATGGAAGTAGGTGAAAAGTATGTTAGTGTTGATTACTTATGATGTCGCAACAAGTTCGAAGAATGGAACTCGTCGTTTGAGGAAGGTAGCAAAAAAATGTCAAGATTATGGACAACGTGTTCAGAATTCTGTTTTTGAATGTGTTGTTGATGCAACGGAGTTAACGAAGCTGAAGAAAGAACTGGTTGATTTAATTGATGAAGAATTAGATAGTTTACGTATTTACCGATTAGGGAATAATTACCAAAATAAAGTTGAGCATGTAGGGGTAAAGGAGAGTTTTGATGTAGAAGCGCCACTGATATTTTAATAAGAAAATTAAGTGCGAACCCTAAGTGCACATGAAATCGCTAAGGGATCCGCACCAAAATTTAGCCATTTTTATCAATAAAAAGCTGTTTTTCTCATGGGAATTTAATTTTATAAGTGTTTTTTATGAAAACGCGAAAATATATCGTGTATTTTTGCCGTTTTCACTG # Right flank : TTATAGTTATCTTAGGATAGCTCATCAAGTACTAAAAATCAGTTGATTACATCAAAATAAAATAACTAAAAGAAGAAAGCCAAGCATTTTAGCCTGGTTTTCTTCTTTTTTATCCATTAAAAACCTCTAAACATCCAATATTTAACTATCACAAAGTCAACAAAAAATGGAACTAGAAGTTATATTTATAAAAGGTATAATAGAGTGACATGCTGTCATTCGTTTTCCTACTACTATTTGGTCACTCTATTCACTTAACTGAAACATACATAAGCATTAAAAAAAGACCTAGAAAGTAAAAGTCCCCAATGATGCCTATGGATAATTCAAATAATACAGAAAATTGCGTAGCAAAATGAATCTGAAAAGATTATTTTTTTGCAGAAAAAATTGTTTTATATATGTTATTTTAAATAATTTATTCTTGTTATATTAACAAACAAGAAAACTGAAAGAATAATGTTATTTTCAGGTCTCTCAGCTGATAATATAATGTTTTG # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCTAGCTCTGTTTAGAGCTAGTGGATTGAAATAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.76%AT] # Reference repeat match prediction: R [matched TCTAGCTCTGTTTAGAGCTAGTGGATTGAAATAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.70,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1910804-1910974 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB946316.1 Enterococcus haemoperoxidus ATCC BAA-382 acvJN-supercont1.3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== =================================== ================== 1910804 34 100.0 34 .................................. CAGTACGTTGATATGGATCTCTCATGATACATTG 1910872 34 97.1 35 .....G............................ CAAATGCCAAGCGACTTGGAATTCGTAAGTTTTAG 1910941 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== =================================== ================== 3 34 99.0 35 GTCTCACTCTGTTATGGAGTGAGTGGATTGAAAT # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT # Right flank : TATTTGAAGCTGATGGTGGTTTTCTTTTTGCTTCACTCTGTTATAAAAGCCAACTCCAGAAAAATCAAGTAAAAAGAAAGACTAAAAATATTAGCCTTTCTTTTTTTACACCTAACATTACGCTAAAATACCTTCATTTTGTTCAAATGGTTAAAAAAAGTGTAAAATTAAACTAGTTATCTGAAATACTGGGTAAACTACTCTACAATTGGTTTAACAATAGTAATAAGAAGGTGAATGAAAATATGAAAAAATTGTTTAGGAAAAAAAGAGATATCGATAACGAGGCGTTTCTTTCATCTGAAGAAACGATAAAACCTATCAATCATAGTGATATTCGGATTCCCACTGATATTAAAGGGCTATCTGATCAAGAAGTACAACAGCTTATTGCAGAAGGTAAAACCAACAAAGAAGTTGAGGATTTATCTAGAACAACGAAGCAGATCATTTTAGATAACGCATTGACATTATTCAATTTTATTAACTTGTTTTTAGCA # Questionable array : NO Score: 8.31 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACTCTGTTATGGAGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.82%AT] # Reference repeat match prediction: F [matched GTCTCACTCTGTTATGGAGTGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.70,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 315635-315801 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB946315.1 Enterococcus haemoperoxidus ATCC BAA-382 acvJN-supercont1.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ================================= ================== 315635 34 97.1 33 .................................C TAGAGTTTGGGGTTACGGTTGCTATAAACCCTG 315702 34 97.1 32 .................................A CGCATATAAGCTTGACTAAATTTATTCTCTTT 315768 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ================================= ================== 3 34 98.1 33 GTCTAGCTCTGTATAGAGCTAGTGGATTGAAATT # Left flank : AGCGTTTTGATTTTCTACAAAAGACATCGGTTAGAGAAGAGCAACAGTTATCATTTGATTTTGAAGAACCGCTTTTAGTTGCTGAAGAAAAAACAGCAATTTTTGAAGATTATTCTCAAGTTGTTTGGCAAAAGCGATCTCTAGGAGAGGTTATTCATATTTTTAGTCATTTAAAATGGCATATTTTAGTTTTCTATGGACGCCAAACTGGGAAGCTAGATACAGGTGAAAATCAAATTTGGTCAAAAAAAGAAGACTTTCAAAATTATGTTTTTCCGAAGCCTCAGCAAAAAATGGTAGAACTTTATAAACAAGAATTTAAAATAGAAGAATAAATTGAGGTGCGAACCCTAAGTGCCCATAAAACCCCTAGGAGGTCCGCACCAAAATTTTGCTGATTTTAGTTGGAAAAACAGGGTTTTTCTCATTTTAATTTAATGTTATACTGTGATTAATAGTTGAATAGTGGAAATATGGTAGGTATTTGCAGTATTTTCACA # Right flank : TCCCCAAAACTGTTTTGAGCTACTCGCCACTTTTCGTCTAGCTCTGTATAGAGCTAGTGGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTCTGTATAGAGCTAGTGGATTGAAATAAACAGATCAAGGATCTACACCCGATTACACAGGGTCTAGCTCTGTATAGAGCTAGTGGATTGAAATAATATAGGTGAACCTGTTGTCGGAACACAAGAAATGTCTAGCTCTGTATAGACCCCACTCCTCTTCAAAATCATAACCAATTAACCTTCAAAAAAACTAAAATCAAACCATTTATTTTAATAGTTCCCCTTCATTGTGATGAGAAAGCAAACTCCTTAGTATGCAAAGTTGAAAATTATGATATAATTATGTTGATATCGGTGTAATGAACACCCAAACGAAAAGTTAGTAGC # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCTCTGTATAGAGCTAGTGGATTGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: F [matched GTCTAGCTCTGTATAGAGCTAGTGGATTGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.70,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 372093-372263 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB946315.1 Enterococcus haemoperoxidus ATCC BAA-382 acvJN-supercont1.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 372093 33 100.0 36 ................................. TTGCAAGTCGTCTGTCTCTGCGTCGGCATCCAAATC 372162 33 100.0 36 ................................. CATTTATATCTAGTAAACTGCCAAAGTTTCGACATG 372231 33 97.0 0 ...........................G..... | ========== ====== ====== ====== ================================= ==================================== ================== 3 33 99.0 36 GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGA # Right flank : TGCCTGCGCTGGTTAGTGTCCCTGTTTTTGTTAGTGGTCTCACTCTTTTATTTGAGTGAGTTTTTTTATTTCCCCCTTAATTCCAAAAAAACAATAAGTAAAGTTGAGTTGTCACTATAATTATCATCCTTTAAAAAGAAAATATTGTTCCAAGAATTCCATCATTATTAAAGAATTTTCCTGCTATATTTGGTATAATGTATAAGATTGAAAAAAGAGAGAGGACGTTGATGATGGCACAAGAAAACGCCTTGATCCAAGGTATGAATCCGAGACAAAAAGAAGCCGTTCTACATACTGAAGGGCCTTTATTAGTTATGGCGGGAGCAGGTAGCGGAAAGACTAGAGTTCTAACGCACCGTATTGCTTATTTAATTGAAGAAAAAGATGTTAACCCATGGAATATTCTAGCGATCACATTTACCAATAAAGCCGCAAAAGAAATGAGAGAGCGGGTTGGGAAACTATTAGAAGTTGGTGGAAATGATGTTTGGGTTTCG # Questionable array : NO Score: 8.31 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.64%AT] # Reference repeat match prediction: F [matched GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.70,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //