Array 1 5945-4475 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWE010000029.1 Nodularia sp. LEGE 04288 NODE_28_length_62946_cov_9.392970, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 5944 37 100.0 37 ..................................... TTATGATTCTCAAACTTAGAGAAATCATAAACCGTAA 5870 37 100.0 35 ..................................... GCTATGGACTGAGAGGCTATGCCCCATCTGCTGTG 5798 37 100.0 35 ..................................... TTGCAGGGGAAAACCGGATTTCGGCAGGTGTGTCC 5726 37 100.0 34 ..................................... ATACATTTCAAAAATGCCTAACGAAATACATCTC 5655 37 100.0 36 ..................................... TTCGTCCCTTGAAGAACTTTTGCTAGCTCGGTGTTG 5582 37 100.0 36 ..................................... CCAGTAATGGCATCCTAAGAATAAAAATATCTCCTT 5509 37 100.0 36 ..................................... TCACTGCTTTAAACTTCTCACCAGCATTTTCGACTT 5436 37 100.0 35 ..................................... ATTGCCGAGGCTATTAATTTCACCAAACCAACGAA 5364 37 100.0 35 ..................................... TAACAAATATGTATCACAGGATTGTTTAACAAAAC 5292 37 100.0 35 ..................................... CCATACTGAATATCTCCTTTGGTGTTCTTAGAATG 5220 37 100.0 35 ..................................... GTGGCATCTACAGCAGACACATGGATAGCAGAACA 5148 37 100.0 32 ..................................... AAATATCTGCAAAGCAAGAATTTTCAGTACCA 5079 37 100.0 36 ..................................... TTCCCAGTCTTCCGGGTCGGCTGCAAGGATTTCTGC 5006 37 94.6 33 ..............G...........A.......... GGCACTTCCGGCGCTTTTGGAATCAATCCTTCA 4936 37 97.3 33 ..............G...................... TTGCTTCTCCCCGCTCTTATGCCAACTCTGTAC 4866 37 97.3 38 ..............G...................... CCCCACTGTATTGATTTATTCATTATTTGCCTTATTTG 4791 37 97.3 32 ..............G...................... TGGATGATATTTATCTAGAGTTAGCACCAGCA 4722 37 97.3 33 ..............G...................... ATTGTCCCCAAACGCCGACTTAGATCCAAAATC 4652 37 97.3 33 ..........A.......................... GCTGCTTGCGACGCTGAAAAGATTTATCAATCT 4582 37 97.3 34 ...............................A..... ACAACCGTTACACCAGAATCACTTAAACCCAATA 4511 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 21 37 99.0 35 ATTGCAATTACAAATAATCCCTATCAGGGATTGAAAC # Left flank : GGGCATCATGAATATGTACCCAGCGAAGGTTTCGGTAATATTCCATCTGGGGTTCATTCGCCGTCTCCGATTTTGCAGCACCATTGAACCTTCCTGTAGTTTATTCTCAAACTGGTGATGGCGATCGCGCAAGCGCTGACAAGTCAGTTCGCTCGTAGATAGTTTTCGATGGTAGCTTGAGTCAGAAGCCCAGAAATATATCTAAGTGCTGTTTTTGCTATGGTTGGAAGTAGGTATTTTTGGTTCATTCAGCGTCAACCAGTAGGTGTTTTTTTGAACATTGAAAATTTTCCGCCTGAAATCCTTATCTCATCTGGTTTTGAACCCTCTCACACCTAAATTGAGGTTGACGCAAACTCCCAAACCTTTGCTATTAAAGCTTTTGAGCTATTTTTAAAGTTTCTATCTTGACAACCCAATCGCTGAAAAGCTATATTCACTTTAGGTTGACGAAACAGCACCTTGAAAACCAAATATATCAATGCTTCCAGATGCAGGCC # Right flank : TTATTACTTCTCGCACAGCGTTTAAAGTAAAAACAGCAATGCAGCTAACACAGAGAAAAGAATGACAGTAACTATACCCATTCAAGCCATAGAATTAGCTCCCGGTAGCCACATCGCCATTCATAACCTCTCCTGGGACGACTTTGAGGGACTTCTCTCGGACTTAGGTGAAAAACGTCACACCCGCATTGCTTACTACCGAGGAACTTTAGAAATAATTTCCCCCCTAGCATTACATGAGCGTCCCCACCGGATTATTGCTTACATCATCACCACAATCTTAGAAATTCAAGGACGCAACTGGGAGGACTTCGGCTCTACAACCTTTAAACGTCCAGATATTGCGGGAATTGAACCAGATACCTGCTTTTATATCCAAAATGCTCACCAAGTCAAAGGATGTACCCAAATGGACTTAAGTATCTATCCTCCCCCTGACTTGTCCATTGAATCTGATGTCACCTCAAAAACCACCCTTGATGCTTACACAGCCCTGGGGG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTACAAATAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 1 14469-15360 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWE010000042.1 Nodularia sp. LEGE 04288 NODE_41_length_47699_cov_12.631170, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= =================================================== ================== 14469 23 100.0 48 ....................... ATTTCCTTTTTTATATATTTGAGGGAAATTTATACTTTCCGCTAACCT 14540 23 100.0 51 ....................... TGTTCCTGCTCGGCTTACTCTTCAAGAAATTGAAAAGCTTTCCGCTAACCT 14614 23 100.0 51 ....................... GTAATACTCAGTATGTATAGCTTGCAGATACTACTGACTTTCCGCTAACCT 14688 23 100.0 48 ....................... AACCAAATAATAATTGAAGTCCCCCAAATCATGGCTTTCCGCTAACCT 14759 23 100.0 49 ....................... ATAACATATTGCATTAGATTTGTCCTAACTCGAAGCTTTCCGCTAACCT 14831 23 100.0 50 ....................... ATCATCTGGTGTTGCTTGTACTTCTTCAGCTTTTTGCTTTCCGCTAACCT 14904 23 100.0 49 ....................... CGATCGCGTCCCGCCGATAAAATTATCGCTATCAACTTTCCGCTAACCT 14976 23 100.0 49 ....................... GCAAATTTCCCGGCTTGCTCCTGAGCAACTTTATCCTTTCCGCTAACCT 15048 23 100.0 50 ....................... TCCGATTGCTCAAAATGTCCGCGCACGTTTCAAAAGCTTTCCGCTAACCT 15121 23 100.0 47 ....................... GATTATCTGCAAACCACTTTAGAGAAGGGATGGCTTTCCGCTAACCT 15191 23 100.0 50 ....................... TATTAATATCTTTACTGAGTTCTGCAAATATAAACTCTTTCCGCTAACCT 15264 23 100.0 51 ....................... TTCATATTTTCTCTATCTGTTGTGTGGGCTTGTCCATCTTTCCGCTAACCT 15338 23 91.3 0 ...................C.C. | ========== ====== ====== ====== ======================= =================================================== ================== 13 23 99.3 50 AATCCCCGCAAGGGGACTGAAAC # Left flank : TGCTGACAAATATTTTGGCAGAGCGCATTGAGGAACTGACAGCGCTATTTACTGCTCAAAGGAAACGTCAAGGAGGCGATCGCACTGATAAAATAGCGGCAACCTGGGCTACGATTTTAGCACGGCGAGAAATGGGAGAATCTCTCAAGGTGATCGCCGATGATTTAGAAATGCCTGTGGCTACTGTTAAAACTTACACCAAATTGGCTAAGCGATCACTGAAGCCGGAAAGTGCCAAGTAATATATCTCGACAAGGACAAACAATCATCCTATGATGATGTAATCAGCTTGAATTTTGGCAGACCTATAGTGAGGTCAAAAACCCTGGGGGGTTTGCCAAATCGCCAGAACCTTGACAAATCAATAGTTACAGAGTTTCATAAGTTTCAGTTGGCAGTTTTTCAAAGCCTGAAACAGGGTTTCTAGATCAGCTTTGCCAAAACTACCTCTAGAATCGCCTTGTAGACTATGTTTCAAATGGCGGGCTTTCCGCTAACCT # Right flank : CCTTGTTCCATTAGTGCTAGTAGTTTCTTAGTAATTCTTTTTGCTATAAAGTAGAAATTCGGCAGAGATATCAGCAGCGATGCTTTGCCGTAAATCCCAAGGCATTAGGACTTCAGCTTTGGGTCGCCATGCCCGGATACGCATACTGACGTTGTGATCTAGATGTCGATAGTTGACACGGTAGTAAGCATCTTGTGAAGAACGTTCTGTGAGGACTTTGAGTAATGCTTGCTGTTGTTCTGGTAGTGGGGTGTGTTGTTTAATTAAACGTTTTACCTGCTGGTAGGCGATCGCTTCAAATGTGTCATGACGAAAAGTACCTTGAATATAACGGTCATGGTGATCTCGGTCAAATCGCAGCAGCATAACTTTAGAGGGTAAGTAAAAATCGAACCCCCAAGCCTTGGACATTTCCATTTCAATTTCTGCCGGACTAGGTAAATTAGCTCGTTGGTAGCGTTGTTGCAATAGCTGGGGAATGGATGGATCTGTCCACTGCA # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.16, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 39156-39977 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWE010000042.1 Nodularia sp. LEGE 04288 NODE_41_length_47699_cov_12.631170, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ========================================================= ================== 39156 23 100.0 50 ....................... TTTTTCTTTGCCTGGTTCCATTCTGGCTGAGAATACCTTTCCGCTAACTA 39229 23 100.0 47 ....................... AATCGACGACGGGGGGGCGGCTGTGCCGCCCACCTTTCCGCTAACTA 39299 23 100.0 51 ....................... TTAATAAGCGTCGTTTGGGTTTTCGCCGTTTTTCTAACTTTCCGCTAACTA 39373 23 100.0 49 ....................... CTGGCATGGTAGTGAAGGAGGTTGTTGTCATTCAGCTTTCCGCTAACTA 39445 23 100.0 57 ....................... ACTATTTTCGCAAGGGCTTTTGAATAGTCAAGGCGACTAAAAGCTTTCCGCTAACTA 39525 23 100.0 49 ....................... AATCGTAGATGAATGCAGATATAGGTTTTTCGTAGCTTTCCGCTAACTA 39597 23 100.0 48 ....................... AAATCTGTTTTTCTTTTCTCTTGTTCTCCCTTTTCTTTCCGCTAACTA 39668 23 100.0 49 ....................... TTTTGAGTACAAAGGGCTGCAAGATGCCAACTTCACTTTCCGCTAACTA 39740 23 100.0 49 ....................... ATTTGATTGACACTATTGCTTGTATACCTGCTTTTCTTTCCGCTAACTA 39812 23 100.0 51 ....................... TTGATTTACAAAGGTTTTAGGAAGAAGCGATCGCTTACTTTCCGCTAACTA 39886 23 100.0 46 ....................... ACAGACTTCCTCTCTCTTGACGAATTCCTCTACTTTCCGCTAACTA 39955 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= ========================================================= ================== 12 23 100.0 50 AATCCCCGCAAGGGGACTGAAAC # Left flank : CTGTTTATTTACGACTTACCCGATAATAAAGCGGCGAATAAGCGGCGGACTCGCTTGCACAAAATGTTGACTGGTTATGGGAAATGGACTCAATACAGTGTTTTTGAGTGTTTTTTGACTGCTGTGCAGTTTACCCAATTGCAAATAAAGATTGAGAAATTGATCAAACCTGATGAAGACTCGATTAGAGTATATGTGCTGGATGCTGGCAGTGTTAAAAGAACTATCACGTATGGTTCTGAAGTACCTCGACAAGAGCAGACAATCATTATATGATTGACCCATAACCAAAATTTTTGGCAGACCTATAGTGAGGTCAAAAACCCTGGGGGGTTCGCCAAATCGCCAGAACCTTGACAAATCAATAGTTACAGCGTTTCATTAGTTTCAGTTGGCAGTTTTCCAAAGCCTGAAACAAGGTTTCTAGATCAGCTTTGCCAAAACTACCTCTAGAATCGCCTTGTAGACTATGTTTCAAATGGCGGGCTTTCCGCTAACTA # Right flank : CTAAATGGTCAAAATTTGTTACCATGTTGGAATATAAAGCTTTGTGGCATGACAGAATTGTGCAGAAAGTTAGTAAGTTTTATCCTTTGTCTCAGATTTGCAACTGCTGTGGTTTTAGCAATCCACTAGTCAAAGATTTAAAGTTGCGTGAATGGTCTTGTCCCAATTGTGGTAAACACAATTTGAGAGACGTGAACGCCAGTTTAAATATTCTGAGTGAGGGCTTGAAAATTTTAACAGCCACCGTGGGTATCCCGGAGGCTTTAAACGCCTGTGAAGAACTTGTAAGACCTGAAGCTATTCAGGCACAAATCGTTGAAGCTCCAAATCGTGTGACTTCTAGTCATGCGAGGTTCAAAAATGAATCTATGTTCATTGAATTAAGCTCAAAAGTGCCAATTTAAACAGATGCAACTAGAAGAAATTTTATCGGAATTAGAGAACAATACAAATAAGTTTCCCCGTTTAGCTTTAGAAAGAGCAATTGAAGAAAGAGAAGC # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.21, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 43403-42721 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWE010000007.1 Nodularia sp. LEGE 04288 NODE_6_length_123966_cov_9.607716, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 43402 37 100.0 32 ..................................... TTTGCGGATCAAGCCCGCGCGATCGCTATTTG 43333 37 100.0 36 ..................................... ACTGGCGTGGATAGCCACTACTTTTAAGGGAATATC 43260 37 100.0 35 ..................................... CGCGCACGTTTTAAAAGCTGCGCTCTTCCAGATGA 43188 37 100.0 34 ..................................... CTGAAGGAGGATGTGCAATAGCGCATTCCTGGCA 43117 37 100.0 37 ..................................... ATCCCTCGCGACCCTTACCAGTTCCCAGCTATTCAAG 43043 37 100.0 33 ..................................... AATTTGATAATGAAGGATGGTAAGAAATCTAGC 42973 37 100.0 34 ..................................... ACGCTCTCACCTGCGCCTCTGTTAGTTCTTTCCT 42902 37 100.0 35 ..................................... TACCATCACCTAATTTATCAGCTAGAAAATCAGTA 42830 37 100.0 36 ..................................... CTGGAAGGGTATGTTTTGAGAGGGGTTTTACTACTA 42757 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 10 37 100.0 35 GTTCCAATTACTAATAATCCCTATCAGGGATTGAAAC # Left flank : TCAGAAGACAAGCGCCGCACCAAAATTCATAAAATTCTCAAATCTTACGGACAGTGGATGCAATATTCTGTGTTTGAGTGCGACTTGACCAAGACTCAGTATGCTAAACTGCGATCGCGCTTGTCTAAAATCATCAAACCCAACGAAGACAACATCCGCTTTTATTTCCTCTGTGCTTGCTGTCAGGGAAAAGTTGAGCGTATCGGCGGTGATATGCCAAGAGACACCACAGTATTTTTTGCCTGAATTTTGCGTCAACCAGTAGGTGTTTTTTTGAACATTGAAAATTTTACGCCTGAAATCCTTACTTCATCTGGCTTTGAACCCTCTCACACCTAAATTGAGGTTGACGCAAACCCCCAAAGCCTTGCTATTAAAGCTTTTGAGCTATTTTTAAAATTTCTATCTTGACAACCCAATCGCTGAAAAGCTATATTCACTTTAGGTTGACGAAACAGCACCTTGAAAACCAAATATATCAACGCTTTCAGATGCGGGCG # Right flank : GCCTCTGTTATTTTCTATGAAAGTGCAACAGTTTTAGAGGATGTTTGTGCAGAAAAACAAGAATATTGCTCCCTCTCCTTACTAACTACCGTGTACACACAAGTGATCGAATCGCCCCCTAACCCCCAATTCTGGGGGAACAAGAATTTTCAAAGTCCCCCAAACTTGGGGGATTTAGGGGGCTAAACAGGCTCAAACGCAGACAGGCAAGATTTGTGTGTACACCGTAGCTCCTTAGTAAGGAGAGGGTTGGGGTGAGGTTAAAAATCACTGCTCAATAATTGGGACGATAGGCTGCTCACCAATTGGGAGAATAGGCTGAATTTCTACAGGCTCAGGATTGAGAAAAGACTGCCAACTCTGAATTTGCTGTTGCGCCCTACTGTAAACAGAACTACTGCGTGGAATCAACTTAGCAGTCTCAATAGCTCGCAGAATATTAACATCACCCTGAGAACGGGCAATATCGAATAACTGCTGACTCCATTGGTTAATAGCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATTACTAATAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 1 1898-993 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWE010000070.1 Nodularia sp. LEGE 04288 NODE_69_length_31967_cov_11.987626, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================ ================== 1897 35 100.0 36 ................................... GAATGCGTCCCATGTTAGCTTTTATGAAAGTAATTC 1826 35 100.0 38 ................................... TCTCATCGACAATGGCGTCGGTGAAGTTAAAAGCTTTT 1753 35 100.0 36 ................................... CTTCAATTACTTCTTCTACCAAAAGATTTTTGTTTT 1682 35 100.0 38 ................................... AATAACATCAGCATTTGTTTCTTGAATTAAAGTGTTCA 1609 35 100.0 40 ................................... CTTGCTCGTCCACATCTCTTTTTGTTTGAGGAACAAGAAA 1534 35 100.0 37 ................................... GTAAATTGGTAAGGCCATGGTTTTCATCAGACACAAT 1462 35 100.0 37 ................................... CAAAACTAGCTTGGTTATAGCCTTGCTTTTCAACTTT 1390 35 100.0 34 ................................... GTTCGGGGTCGTAAACAAACAATATGTTGTTAGG 1321 35 100.0 34 ................................... TGGATTCAAAACCTTCATCAACCTTTGTATTTAC 1252 35 100.0 37 ................................... AGATAGGTCTTGAATAACTGACTCCCCCTTGGCAAGA 1180 35 100.0 44 ................................... AATATGATCAGGGTGATAGGTGAGGTTTGTGACTATTTGATGTT 1101 35 100.0 39 ................................... AATGCCGTAACACTCTACCTCAAAAACTTTCTTGTTTAA 1027 35 77.1 0 ...................A........ATACCCG | ========== ====== ====== ====== =================================== ============================================ ================== 13 35 98.2 38 CTTTGGCTTCTATGAAGTCGAATAAAAATGGAAAC # Left flank : TTTGGTGAATACGAGAATATTGGTTCCTGAAGATTTTACTTCGCCAGATGAGCGTGGTGGCGTTTATTTATTTCCTGATGCTTTGAAAAAATTCCTTAAACATTGGGAAGAAAAGTTACAATCTGAGATCACACACCCACACACGGGTTATAAAGTAAGTATACGACGTTGCATTGAGTTACAAGTGCGAGAGTATATTTCCTGCTTGATGGGTGAAGTTGAAGTCTATCGTCCAATGATTTGGAAGTTGTAAATTTCATAGGCTTTCATTAGCCTATCTTATAGTTTTACAGCTTATCTATAAGTATCTGAGGGAGTCAAGCGATCTCTGAAACACTTATTTTTTCGTAGACTCCCTCGGATAAGCTGTTGGGTAAGGGTTTGAAAGACTTCAATCATGCATTTTTGGACTAAGTGCTGTCCGGGGAGGAGATAAAATTTGACTCCCTCAGATCAATGGGTATACAATGCTTACTATACAAGGCTTCTATAAATGTAGC # Right flank : GACATAACAAAGTTAGTACCGGGTATTTATGCAAGTGTAATTAACTGAACGCAGATGTTTCCATTTTAAATCAACTTCACAGAAGCCTGTCAATTCAAAGCTTTAGGTGTCAGGGAAGTTTTGACTGTTGGGGCATGAAAAAGAATTGTAAAAACAACCTTTTTATTTGCTTGACGCAACACTTGCAAATAAGCAACAGCATCATCACGGCGGCGAAATCTAGCTACAATCATATATTCTTGACCAGCGAGATATCGCACAACACACCAAGGATGCAACTGCTGTGAATAAGTCATATTATCCTCCTGACAAGTCAAGCAAAATGCCTTTGCTTTTGACTTTGAATTAACAATATTGACTGTAAGTCAGGAGGTAAGTGATAAAACAGCCCAGGATGACATTGACAATTAATTTCTTATATGCTTTGCATACAGAAAAATTTGCAGAACTGGGTCGGGTATTTGCTCAAAATGCTCTAGTAGAAAATCCATTAGCGCTAA # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTGGCTTCTATGAAGTCGAATAAAAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 11458-11070 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWE010000070.1 Nodularia sp. LEGE 04288 NODE_69_length_31967_cov_11.987626, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 11457 35 100.0 39 ................................... AATTCTGAAACCTGAGTTTCGGAACTCTTTTGCATGACC 11383 35 100.0 34 ................................... CATCTTTCCACAGATATACTCTTTTTCATCATTA 11314 35 100.0 36 ................................... ATCACGATAGAAGTTATGCTCCAGCCTCCTTATCAT 11243 35 100.0 36 ................................... TACATCAACCCATGTTGCTTGTAGATCTGCAACAAA 11172 35 100.0 34 ................................... AAAAGCAACCTAATCCAACAAAAGTAAATGCAAT 11103 34 88.6 0 ...........................-.A...GG | ========== ====== ====== ====== =================================== ======================================= ================== 6 35 98.1 36 CTTTGGCTTCTATGAAGTCGAATAAAAATGGAAAC # Left flank : ACATCTGCACAAGTCTATATTTTTGGGGATTTATCACTATTTTTAGCATTTTTGTACTTTTTACCTTTGCTTGCCCTTGTAAGAGGCTTGAATAAATAGTATAATTAAGTACAAACAAATTTAACCATATCATAGAAATCTCAAGACGTTGTTAAATTGACGCGAACAACGAAATCTACAGTAGTAAGGGAGTGTGTACTTGTTTGATGGAAAATGTTGAAGTTTAGTGACCAATTATTTGCAAGTTGTAAATTGTCATTCCTATTAATAAGTCAAACTTATAGTTTTAATGTTGAATTATAAGTATCTGAGGGAGTGCAGCAATGCCTGAAACACTTATTGTTTCGTAGACTCCCTCAGATAAGCTGTTACGTAAGGGTTTGAAGGGCTTCAATTGTGCTATTTCTAGTAGAATTTCCTTCTTGGAAGCAGATAAAATTTGACTCCCTCAGATTAATGGCTATATAATCCTGGCTAGGCAAGGCTTCTGTAACTGTAGC # Right flank : GGTTTTGACTTCAAAGCAGGGAGAGCATCCCACTTGCTTAATGAAATATGTATCTTCCAAGTTGGGATGCTCCCAAACCAAGAATGTGCATTTTTCGTTGTTCGCGTTAATTATTACTAACTAACGATAATTTAGCTTAGTATATATTCATTCTATTATTATTTTTTCATAACTAAGTCATGACTGCTGAACTCATGAGCTATGAATGAGTAAATTGTGACTGCAAAGATCCTGCTTTTCCAACTATGGGAACTCGCTGTGAGTCATCCAACCTACAGTTACAATCCTTAATAGCTCCAAAAATTAGACTCTTAAACCATCTATATAAAAATTAAGTATTAATACTTAATTATCTATTTTGTATAAACTTTAATGCTTATGTCTCCTATTTGTCATTGTCTTATCGGTATTCCTGGTTCTGGAAAGTCCACTTTTGCTCGTCAATGGGTGAAATATGACCCCAACTGTGTCATAGTTTCTACAGATGCAATTCGGGCTGA # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTGGCTTCTATGAAGTCGAATAAAAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 8173-7207 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWE010000115.1 Nodularia sp. LEGE 04288 NODE_114_length_15589_cov_9.237938, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 8172 37 100.0 35 ..................................... GATGCACCAGAGGGGTGGATTTTTCGGAAACCAAT 8100 37 100.0 32 ..................................... ATCGATTCTTACCACCAAGCAAGAAACTCAAC 8031 37 100.0 36 ..................................... CAAGCCCTGATTTGATAGCTAGCAAAATCCCCATAG 7958 37 100.0 32 ..................................... AATTTTCAATCTAGTGGCGGTAACAACCCCAC 7889 37 100.0 34 ..................................... ACTCTACTGGGTTCCGGTACTGGGAGGTAGTAAA 7818 37 100.0 32 ..................................... TTTTTTGAGTACGGCGGCGAACCATCGCAATC 7749 37 100.0 32 ..................................... GTAAGTTGTCAACCATTGCACTAAAACTATTC 7680 37 100.0 35 ..................................... ACGATGAAGAAAATCTATGGTGGCAGTGGCAAACT 7608 37 100.0 36 ..................................... TCTGGCATCTAAAATCAGCTAAAAATAGCTATGTAG 7535 37 100.0 32 ..................................... AGAAGATAGGTGAGATGAGATGTGTGACTTGA 7466 37 100.0 38 ..................................... CGGCAAAGATGAGCAATCCACGGGAGAATTTGAGGTGA 7391 37 100.0 37 ..................................... AGCCGCCAAAGCTACAGAATCACCATCGACTTGCGTT 7317 37 100.0 37 ..................................... CCAGTGGTGAACCTGTAGATTGTAGGCGCGGGGTTTA 7243 37 97.3 0 ...........C......................... | ========== ====== ====== ====== ===================================== ====================================== ================== 14 37 99.8 35 GTTGAAATCACACATAATCCCTATTAGGGATTGAAAC # Left flank : TTAGTTAGGTGTCAGGTAACAAGAGTCTACTTTGCCCAAATGAGCGATCGCACAATTCAAGCTTATGTGAATACAGGCGAACCCCTCAAGTGTGCTGGTGCTTTCGCCCTTGAGGGTTTTGGTAGTTTATTTGTGGAAAAAATCGAAGGTTGTCACAGCAACGTCATTGGACTGAGTTTACCCCTGCTGCGGCAGATGCTAGAAGATTTGGAATACGATGTTACAGATTTCTGGCAATAGTTAATTTTGCGTCAACCAGTAGGTGTTTTTTAAACAAGGTGAATTTTAACGTCGCAAATGCTTACGCTGTAAGGTTTTGAACCCTATAACTCTAATATTGAGGTTGACGCAAACCCACGAAACTATTGCCATAGTTGCTTTTGAGGAGATTTGCTTAAGTGTTAGTATTGACACCCTCATGCCTGAAAGGTTATTCTTGTTTTAGATTGACGCAACCGCACCTTGAAAACCCCATAATTACAAGCTTTCAGCCCTGGGCA # Right flank : ACGGAGATCAAAATTCTGCGGTCTTCTTTGCGCCTTTGCGCCTTTGCGTGAGAAAAAAATATATTCTTATATTACCAGCCAAAACAGAAGTGACACAGGAGAAGGTAGACTGACAACTAGATAGAATTTGCAAGAAAAAGATGTCATTTACTCCTACCACCTCGCTGCGAGAACAACAACATCCCTTAATTCATCAACTAGCTGATTGTATAGAAGCAGTTTGGCATGAACACTTAGAACTATCTCCTTACCATTTACCTGCTGAACTGGGGTATGTAGAAGGTAGACTGGAAGGCGAAAAACTGATCATAGAAAATCGCTGCTATCAAACACCCCAATTCCGCAAACTGCACTTAGAACTAGCAAAAGTGGGGAATATGCTAGATATTTTGCATTGTGTGATGTTTCCCCGTCCAGAATATGACTTACCCATGTTTGGTTGTGACTTAGTTGGGGGTAGAGGTCAAATTAGTGCGGCGATCGCAGACCTATCACCTGTA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCACACATAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 1 13313-11823 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWE010000092.1 Nodularia sp. LEGE 04288 NODE_91_length_20671_cov_9.677132, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 13312 36 97.2 38 ......G............................. TTGGCGTACGCCCACTGCCCAACCGTCGCAGTTTGCAA 13238 36 100.0 39 .................................... CGAAATCGCTAACAAAGCGGTTGCAACTGGTGGAAACGC 13163 36 97.2 37 .........................T.......... GTTCGCCTGAAAGAGTTGAAGAGCTATTCTTCTTAGT 13090 36 97.2 33 .........................T.......... TGAACCCCACCCCAGCCTGAAAGGAAACAATGT 13021 36 97.2 39 .........................T.......... AAGAAACGCCAGTTCTTTGAATGGCAAGACTCGCCTACA 12946 36 97.2 36 .........................T.......... CATCGTAAAAGGAAATGTTGGTGTTTTGGTAGAAAC 12874 36 97.2 37 .........................T.......... TTTGACCTGGGTAAAAGATATATAACTTGCAGTTGTA 12801 36 97.2 38 .........................T.......... AGTTTCGTAACATTGAATTTGGAATGAAGTTCGATAGT 12727 36 97.2 35 .........................T.......... GTTTCCATTTCCCAAACAAACTAGCACCGAAGGTG 12656 36 97.2 33 .........................T.......... TCATCCGGTGGAACCTGGGAAATTCACACTTTC 12587 36 97.2 37 .........................T.......... TCGATACGGTGGAGCTGGTTAAGTCATTGCCTCCAAA 12514 36 100.0 38 .................................... ACAAAAGGTAATTATCCATGGGTAGACAAAACCGAAAC 12440 36 100.0 36 .................................... CATCTGATTAATTTATTAAATCCAGTGAGTAACAAC 12368 36 100.0 39 .................................... ATGTCAGTATTTAGAGATGACAATCAGCGTAAAAGAATG 12293 36 100.0 38 .................................... ACAATCACTGGTTGAAGACAATTCAGGAGGTCGAGAAA 12219 36 100.0 36 .................................... TGGAGGAAGAGAAGTCGTTCCTCAAGGAGCTTTAAA 12147 36 100.0 32 .................................... AAAGAAGGTGTACCTATGAGTCTTAACAGAAA 12079 36 100.0 37 .................................... TAACATGACTATATATACTTACAAGTGTAGTGATTGT 12006 36 100.0 36 .................................... AATTACTCCAAATATGGAAACCCAAGGTAATCAACT 11934 36 100.0 40 .................................... ATTATGTAAATCCTTCAGGTATGGCGCCAGAAGTGTTAGC 11858 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 21 36 98.7 37 GTTTCCATCCCCGTTAGGGGAAGAGGTTATGGAAAG # Left flank : TATCCAAACTAGAGAAATCCCAGCTTGAAGATAATCAGTAGCTTTTTCGATCATGTCTCCAAAAGTTTGACCAGGAGAAATAATTTCGATAACTAATTCTGGTATAACAGGACAAGCTTCATCTTTAAGCCAGTCAGCAGGAAGACGGTTATAAGAAATGTATGTTAAATCAGGGACAGGTATCCAATTTTCTTGATTTCTTGTTAATTTTATCCCCCATTCCACGACAACGCGACCTTTTTCTTGCGCCCATGTGGATAATAGGATAAATAATGCTCCTGTGGTTGCGCCATGAAAAAATTTAGGAGACATTTGCTCATTTTTATATTTCGGTACAGCTTCACCGTCAACAAACTCATAAGCAAGTTCACTTTCGGGAAGTGCAAGAAATTCGTCGAGAGTGAGTTTGGTTTTTAGTTGAGTCATGGTTAGTTTTGGTGGGTTCAATATTCCCGACTTCTATGATAACTAAAGTTCGGTTTATACCCGGATTTCTCACA # Right flank : AGTTCACTTCTGGAAGCCTTGCTAGGAGAGGGTTTGAGATACCCGAATCGACACCAGTTTTTGCAGTGTCAATAACTCCCAAAAAATTCTCAATAACTCGTGAACTTTACAGGCTGGAAAGCTTACTGTGCAAGCAATCGACACCAGTTAACGAAATTATGCGGTTTTCAAGGTTCGGGGGAGTGGTGTCGATGAGTTTTAACTCACCTGATAAAATGTAAAATATATTACCTGAAATTGTCAAGTTGTCTTCTGCAACTATTTAGGCGATAAGGACTAGATTACAGTCTGAACCTAGTACCGCAAGGCGGAAGTTAAAAGTCAAAAGTCAAAAGTCAAAAAGCTTATAAAATGGGCTTTTCATGGATTTTGAATGGTCTGTTTATTTACGCCAACTTGTACTAGATAATTGACGTGAGGTACAAGCAGTAATAATTAAACGCAGATGGACGCAGATAAACGCAGATAATTTTTTACTTTACTAGACTAGGAAATGCTAT # Questionable array : NO Score: 3.05 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTTAGGGGAAGAGGTTATGGAAAG # Alternate repeat : GTTTCCATCCCCGTTAGGGGAAGAGTTTATGGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 73718-73897 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWE010000013.1 Nodularia sp. LEGE 04288 NODE_12_length_95322_cov_9.988056, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 73718 37 100.0 35 ..................................... CAAATAAGCCCAGAGCGCTGGGCAATTGCACTATC 73790 37 100.0 34 ..................................... AATTCATCTTTAGCAGCAATGATTAATCAAGTGC 73861 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 3 37 100.0 35 GTTGAAATTACCAATAATCCCTATCAGGGATTGAAAC # Left flank : TGAGGTTCGCGCATTGTGCCATAGGTATGGAAAACATCACCCCAGCAATGGAAGTTGGTTTTCTAAGTCTCCCATCACAAAACCTATACCAAAAATGCGCCTATATTTTCTCAGTTTATCTTTGTCTGAGTTTAATGAATTATTGGTTAGAATCCTAGCGATGGGCAAAGCCCCGCTTTTCCTGCGGCGATGGCGCGGAGTGTCCGCTAAAAGCGATCGCCATTTTTCAGACATCCTTAAAATGAGTTTTGCGTCAACCAGTAGGTGTTTTTCAAAGAGGTGGAAATTTTAGCCTTCAAAAGCTTACCTATTATGGGTTTGAAGCCTCTCAACTAAAATTGAGGTTGACGCTAACAGCCCAAAGCCTTACCAGGAGAAGATTTTAGTTAATTTCTCAGATATCACCCTTGACAATGCAAGTCCTGAAAAGCTAGTTTAAGTAGAGGTTGACGAAACTGTACCTTGAAAACCAAATATATCAACGCTTTCAAGTCCGGGCT # Right flank : CGGAAGCAACTTTATTTAATGTCGGATATTGCTGCTACGAATAATCCAATAACTAATGGATAGGGCTAAAACTGCAACTCCTAACCCAATGATATCAATACCTGTTATTTTGGTTAAATCAAGGATAATAATTTTACGCGCAACTGCAATTAAGGAAGTAACAATAACTAACTCAACTTGAACAACGTGTTTCCGGAGATAAGCTGTGATATTTTCTAAAATTTCTAAAGCAATTAAAATGTTTAAAAATAATCCAAAAATTGTAAATAATATTTTATTAAATTGACCATAAGAACTAGTAAAGAGTTCATTAATTAGGTAAATTAGTAAATCAAAAACTGCGACGATGATTACCAATACCATTGCTAGTGACAATACTTTCGAGACAAGCACCTCAAAGTTTTCTATCAGGTGCATAAAGTTGTCGTCCCTAGCAAGATTCCCAATTTTTCTGAATAGATGCCTCATTTGCCATAATTTAAGAGATTAAAAATAATTTT # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTACCAATAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 1 5231-5845 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWE010000107.1 Nodularia sp. LEGE 04288 NODE_106_length_17951_cov_9.655184, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ===================================================== ================== 5231 23 100.0 50 ....................... CTTGGTCGCGTGTCGCTTTGTTTCAGGCAATGGAAACTTTCCGCTAAACT 5304 23 100.0 52 ....................... TGTAGAAAAATATGGGCGAGAAGCCAAAATACTCAGAACTTTCCGCTAAACT 5379 23 100.0 51 ....................... ATCAAGGCAACCGGACCAGTGTGGCGATCGCTCACCACTTTCCGCTAAACT 5453 23 100.0 52 ....................... GTTCTAGTACAAATTTATCGGTGAAAATCCATTCTAGACTTTCCGCTAAACT 5528 23 100.0 50 ....................... ATCTGTAAGCATTAAGTGAATAAATGAAATTTCTGCCTTTCCGCTAAACT 5601 23 100.0 48 ....................... ACTTTAAGCTGACCGTTCCATAAGACGTGTTCAGCTTTCCGCTAAACT 5672 23 100.0 52 ....................... ATAAACTTCTTCAAATCTTTGCTACAAAATCCATAAGTCTTTCCGCTAAACT 5747 23 100.0 53 ....................... AAATCAGGTAAGGTCACTTTTAGAGAAGATTTTTTAAACCTTTCCGCTAAACT 5823 23 95.7 0 ..................A.... | ========== ====== ====== ====== ======================= ===================================================== ================== 9 23 99.5 51 AATCCCCGCAAGGGGACTGAAAC # Left flank : TTTGGTGAAAAACTGGATATCTATACCATAGCTCACTTGCAATTTGCGAGCGATCGCGTCAGCGCTGCTGCAAAGCAGATCGCACTGAGAAAATAGCGGCAACTTGGGCTACAATTTTAGGACGGCGGGAAATGGGAGAATCTCTCAAGGCGATCGCCAATGATTTAGAAATGCCTGTTGCTACAGTTAGAATTTACACAAAATTGGCTAGGCGATCGCTAAACCATTCAAATGCAAAGTAATATATCTCGACAAGAGCAAACAATCATCTTATGATGATGTCATCAGCTTAAATTTTGGCAGACCTATAGTGAGGTCAAAAACCCTGGGGGGTTTGCCAAATCGCCAGAACCTTGAAAAATCAATAGTTACAGAGTTTCATAAGTTTCAGTTGCGAATTTCGCGAAGCCTGAAATAGGGTTTCTAGATCAGCTTTGCCAAAATCGCCTCCAGAATCCACTGGTAGACTATGTTTCAGATGGCGGACTTTCCGCTAAACT # Right flank : CATTTCTGGCAGGTAGTAGAAAATCAATCAAGCCGAATTATAAAGTTTTTAGGAATAGTTTGCAATAAGCAAGAATATAAACAAAGCGACGGGTTAAAAACCATATCGCCTTGCTCTCATCACTCCAAAATCCCAATCACCGCAGCCAGAACAGCCGCAGCGTGATTACCTGTTGGGAAGAATATCCGCTTGCGCCACTGGATGATCTCAGTGAAACTTTTAAGCACTTTACCATCCCCAAGTGCCAGGACTACCCTTAAACGGCCCAACAATATCATTGGTAACCCAACCACCGTAAAAGTTACCTGGTTGCGGTTGTACTTTTTCGCCATCGACGTAGCAACCATCCATAAGATGGGCATAAAATGCTACATAATCTTTAATAGTTGCAAAAGCTGGTGTAGGGTCGGGATAGAACCAAGCCGCATTCTGTGCTTCTTTATCACCAACGCGGATGGTGTAGTAACCAGCAGAGCCTTTCCATTCACAAAAGCTGGATT # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.34, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //