Array 1 177635-179249 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZMO01000002.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5462402, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 177635 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 177696 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 177757 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 177818 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 177879 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 177940 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 178001 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 178062 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 178123 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 178184 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 178245 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 178306 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 178367 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 178428 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 178489 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 178550 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 178611 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 178672 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 178733 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 178795 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 178856 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 178917 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 178978 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 179039 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 179100 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 179161 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 179222 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 195757-197921 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZMO01000002.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5462402, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 195757 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 195818 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 195879 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 195940 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 196001 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 196062 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 196123 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 196184 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 196245 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 196306 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 196367 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 196428 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 196489 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 196550 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 196611 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 196672 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 196733 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 196794 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 196855 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 196916 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 196977 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 197038 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 197099 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 197160 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 197221 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 197282 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 197343 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 197404 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 197465 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 197526 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 197587 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 197648 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 197709 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 197770 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 197831 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 197892 29 93.1 0 A...........T................ | A [197918] ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //