Array 1 4096-1977 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIWVP010000007.1 Serratia marcescens strain BM19 Scaffold7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4095 28 100.0 32 ............................ AGCTGGCGATTACGTGCGTCACGCTGGTATGC 4035 28 100.0 32 ............................ GTTAATCACGTTGTACGTATTACGGAAGCGGT 3975 28 100.0 32 ............................ TAGCAGGAGGTGATCACGTCTTGGCAGCCGGA 3915 28 100.0 32 ............................ TCTTACATTGCCTGACCGTCCTGGCCGGGCAA 3855 28 100.0 32 ............................ ATGTTTCTTGTGCACCAGGGCGTGAAGCCTCA 3795 28 100.0 32 ............................ TCCTCCGGCGGCATCGTCAGACAAACCCACCA 3735 28 100.0 32 ............................ TTTGCTCTGCCAGCGGCTCACCTGCGATTTAT 3675 28 100.0 32 ............................ CACCGCGCCCTACGGGGCGCACTGAGGTACTC 3615 28 100.0 32 ............................ TGAGCGAGTACCGTCCTAACCTGATAGCCAAA 3555 28 100.0 32 ............................ TATGCGTGATGATTTTAAAGAACATCGAACTA 3495 28 100.0 32 ............................ CTGGGAATTTGTGGCTCTGGCTACGGTAATGC 3435 28 100.0 32 ............................ GGCGGTGGCTAAGTACATGTTGGCCATGACGA 3375 28 100.0 32 ............................ TTGGGGCGAGGAGGGAACCGAGCTGCACGACT 3315 28 100.0 32 ............................ ATGACACTGGCGTTTTCCTTGTCGAACCGAAA 3255 28 100.0 32 ............................ CAAGAGGTGGGTTTTTGCTTTATTACCATCCC 3195 28 100.0 32 ............................ GGCACCCGCACCGATGCCCCCGGCGCGCTGTC 3135 28 100.0 32 ............................ GTCACTACGATGGAGGTGAGCTGGGACCCGGC 3075 28 100.0 32 ............................ TATAGCGACATTTCGCGTAGGGAACACCCAAA 3015 28 100.0 33 ............................ TGAAACCGACCTCTCCAACTACTACGACAACGT 2954 28 100.0 32 ............................ AACGACAGGAACAAGGCCATCTCTGAGGGTTC 2894 28 100.0 32 ............................ ACAGATATGCGGTCTGTGGCGTCGGGCGCATT 2834 28 100.0 32 ............................ ATCAAAGCCCTTTGCCTCTACCAGCTCAGCAA 2774 28 100.0 32 ............................ AAGTAGCAAGCAGACTTGTTCAAGGGTGGTAA 2714 28 100.0 32 ............................ CGGACGGCGCCAAATTCCGTTATGACGCCAAT 2654 28 100.0 32 ............................ AAATAGCTGGCCTGCAGGACTACATCCGCAAC 2594 28 100.0 32 ............................ TGTTCGTTCGAGAAGCGGCCCCCACATCCTGA 2534 28 100.0 32 ............................ AGTTTCAAACCAATCATCATTGGGGTGAATGC 2474 28 100.0 32 ............................ TTTGGCATCGGGGCGATCGCATGAAGACGTAT 2414 28 100.0 32 ............................ TGGTCAACTCTGACTATTTCGTTGCCCACAAT 2354 28 100.0 32 ............................ TTCTCCGGGATTCAGCTAACCGTTGCCATGGT 2294 28 100.0 32 ............................ CGATCCATGATCGCCGCCTCCGAATCAGTGCA 2234 28 100.0 32 ............................ AAAATCGCCACGGTCATCAAATCGACCACGGC 2174 28 100.0 32 ............................ AGCGCCAGGTACAGGCTCGGCGGTACTGCACG 2114 28 100.0 22 ............................ AGCCACAGCACGCCAATCGTGA Deletion [2065] 2064 28 75.0 32 CGA...A.A....C.............G TTCTCATAAGAATACGTCTTCGCCTTACTAGT T [2054] 2003 27 75.0 0 ..GT.......C.C......-..C...T | ========== ====== ====== ====== ============================ ================================= ================== 36 28 98.6 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGCGCTGACGGCGCTGGTGGGATTCGACTGGATGAAAGGGTTACGGGACTATACCGACCTATCGCTCATCCAGGCTGTGCCTGCTGAGACGGCGTTTCGTACCGTCAGCAGAGTTCAGGTAAAGAGTAGCGTTGAGCGTATACGCCGCCGAGCCGTCAGTAAAGGTTGGCTGACTGAAGAACAGGCCCGGGAAAGAATACCGATGGCGAACGAGCAGCGCACCTCATTGCCTTTTATTGCCTTGAAGAGTCTCTCCACCGGGCAACACTTCCGCTTGTTCCTGAAACAAGGCCAATTACAGGAAAGGCCAACGCCGGGCGTTTTTAGTTTTTATGGGTTGAGTGCCTCCGCTACGGTACCTTGGTTTTAACCCTCTTTTTTCGTTCAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATCTGAAAAATTAGGGTTAAACCGAGGTATTTGCCTGTTGTTCTTTAATAATCAGCTCATTAGTGATTTTTTTGTTCA # Right flank : AGAAGGGATAAAACTTTACTGACACCTGTTAACCAGGAAGCAAATACTCCAACGACAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCCAGCGTTAATTCCCCTTTGCCGCGCAGCGCCTTGGCGCCTTTGCCGGCCTGATGCTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAACATGTAGAGGTGCCAGAGAGTGGGGGAAGTGTCGGTCATCGTACGCCGTTTCGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCATCACAATCCCATCCCCGGCCGCCGGAGCCCTACCGCTTTACCCCTTTTTTCCCGCCAGCTCGAAGCGCGGCGAGACGATGCCGTACAGCGTCCAGCCGAGGAAGGTGGCGATGGCGCCCCACATCATCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 13732-12921 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIWVP010000007.1 Serratia marcescens strain BM19 Scaffold7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 13731 28 100.0 32 ............................ TGCCGCCCCACACTGGCAGCGGCAGGGTAAAT 13671 28 100.0 32 ............................ GCTGGGCAGAAGAGCGTTTTGGCCAGCGAGGA 13611 28 100.0 32 ............................ GCTGGGCAGAAGAGCGTTTTGGCCAGCGAGGA 13551 28 100.0 32 ............................ GATAACCTCGAATTCCTCACGCTGGTGAAGAA 13491 28 100.0 32 ............................ AACCAAATCGGCTAGTGCGGACTGCGTCAGGT 13431 28 100.0 32 ............................ ATCTGCTGGTATCGCGGGTCGTTTGGCCCTGG 13371 28 100.0 32 ............................ GAGAGCGAATCGAAATAGCCAATAAGCAGATC 13311 28 100.0 32 ............................ GTCAACGGTCAGCTTGAAGTAAATACACTCGG 13251 28 100.0 32 ............................ AGCGATCGCATCAATCGGGATGCTATTACCAC 13191 28 100.0 32 ............................ AGCTCCTGATCATCGAGGGCATCGAGCATTTG 13131 28 100.0 32 ............................ TATGGCGGCGAGTGGGAGCCGAAACCGGCCGT 13071 28 100.0 32 ............................ AAACTTGGCGATAATCTCCGCCCGCAGGCTCT 13011 28 100.0 32 ............................ ACTCCCTGCGCTTCGATAGCTGCAAGTGCTGC 12951 28 96.4 0 ....................A....... | G,A,A [12924,12928,12930] ========== ====== ====== ====== ============================ ================================ ================== 14 28 99.7 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CCGGCCTACTACGGCCGCTTCGGCTTTAAACCGGCCGCCGCCTATGGCCTGCACTGTTGCTGGCCGGACACGGAAAGCGCGTTCCAGGTCTACCCGTTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAATCGCTTTTAACGATCGGCAATAGATACTCCAACGACAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTCTTTTGCGCAGCTGTTTGAGCTGACAATCCAGGTCTTCTGTGGTGTCTATGCGTCTGAGAGAAACGGATGGTGATACCGAACAGGGAACCCAATAATTCCCCCCTAAAAATGCAGACACGCCACCTTACTCCGTTCTGGGTTGCCGAACCCTTTTTTGAGCGCCACTTTTAATTGATTAATTTAAAGTCATATTTTTAAACTCTTTAAAAAAGGCTTTTTGAACGGAGATTTCGATTTTCCTCCATCAATCAGCTGATTAGCGCTAATATGCAACG # Right flank : AAGTAATATGTATTTGGTAGATTCCGGCAGTGATCAATAAGTGGATGATTTTATTTTTCTGATTGATGAATATTGACTCGGTTGCAACGGATTTCCTTGGAAAAACGTGGTAGAACGTTGGTGTCGTCGGCATTGATCTGTATTGCTTGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATATAACAATGAAAAATACCCTTTCCCCTTCTGAATTAAAAACAATATTGCACTCGAAACGAGCAAATTTGTATTACCTGCAATATTGCCGAGTTTTAGTGAATGGCGGCCGCGTCGAATATGTCACGGACGAAGGAAAGCAGTCTCTTTACTGGAACATCCCTATTGCCAACACTACCGTCATCATGTTGGGAACCGGAACCTCGGTCACGCAGGCTGCAATGCGTGAGTTTGCTCGCGCCGGCGTTTTAGTCGGATTCTGTGGTGGCGGTGGGACACCCCTATTTGCAGCGAACGAAGTGGAAGTCGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 17898-17269 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIWVP010000007.1 Serratia marcescens strain BM19 Scaffold7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 17897 28 100.0 32 ............................ ATTGAGCTTTACGCCGCCGGCATACACCCAGC 17837 28 100.0 32 ............................ GGCGTAATGCCTGCTCCTGTTCGAGTCTTCTT 17777 28 100.0 32 ............................ TCGAGCGGATTGTATGGATACGGTTTTGCGTC 17717 28 100.0 32 ............................ TGTTTTGAGTTGCAGCACTTTTCGCACTTATC 17657 28 100.0 32 ............................ ACTTTCACGCGCCCGTTTTTATCGAAATCGCG 17597 28 100.0 32 ............................ GATCCACGGCTTCACCGCTTTCATCAGTAAGT 17537 28 100.0 32 ............................ AGCGAAATAGTGGTTTTCCAATACTCGCAGAT 17477 28 100.0 32 ............................ TGGTCACGAACACATGATGCACCAGGTGGCAT 17417 28 100.0 32 ............................ GGAGCGGGTTCAGTCATTTCTTGCCGTTGGCC 17357 28 100.0 32 ............................ CGGCGTGGCGAGGCTAATGCGTTGCGGCGCGG 17297 28 85.7 0 ....................A...ATG. | C [17271] ========== ====== ====== ====== ============================ ================================ ================== 11 28 98.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CCTGCTGGCGGTACTGGGGCTGGGCAAGCTGGTGACCGAGTGCCTGCGCAGCGTCGAAATGATCTACCTGACGCTGGCGTTCATCACCACGCCGATCTTCTACCTGTCCGGCACCATCTGGCCGCTGCAGTCGATGCCGGCCTGGGTGCGCGCCATCTCGTACAGCATTCCCTCCACCTGGGGCACCAAGGCGATCGCCGGCGTCAACCAGATGGGGCTGTCGCTGAACGAAGTGTGGGGCGACGTGATGATGATGCTGGTGCTCGGCGTGGTCTACACCCTGCTGGGCTTCGGCGTCGGCTTCTTGCGCAACAGCGTGGCGCTGCGCGGGATGTTCAGGAAGCGGCGGGCGAGTTGATCCCCTCATTGACCCTTTTTTTGGCGACTATAATTAATGCTTTTAATTTCAATAAAATGCATTCTCTGCCGAAAAAAGGGTTCTGGGATGAGTAAGGGCGATTATCTTTTTTTTCTCAGCAGGTTAGAGAAACTTGCTAACT # Right flank : GCACCACAATGGGTGCCCATTTGTTGAATGTAAGGGGCTTCACCCCACCAACTCCAACCCCGCCACGCGGCGCCAGTAGCCGTTGCAGTCGGCGTGGTCGATCAAGGCCAGCGGCTGCTCGCCGCGTTCGTTGGCGCGGAAGGCATCGATTTGCGCCAGCGTCTCTGCGCCCTGCGGCGATAGCCGCACGATGTCCACCAGCCCCTGCATGCTCGGCAGCTCGTTGCCGAGGTTGTAGCAGTAGCCGCTCATGGTCTGGATGCCGTTGAGCACGAACACCTGCTGCTGTTCCTGTGAGCGCATCATGCGGCCCTGCGGATACTTGATGCAGCAGGTTTCGCATTCGTCCTTGCCGCGGTTCTCCGAGCGGGCGGTGAAGCAGCGCGCCGAGTAGGCCAGCGGCAGGTGGCCGTAGCTCAGCACCTCCACCTCGAAATCGTGGCGGAACCCCAGCTCGTCGCACTGCGTCAGCAGGTTGGTCAGCCAGTCGCGCGACAGCT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //