Array 1 1022485-1023733 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061329.1 Escherichia coli strain EC93 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1022485 29 100.0 32 ............................. GATACGCTTCATCGCCCGACGTGGGGAGCATA 1022546 29 100.0 32 ............................. ATATTGTCAGAAACTGGCTGGAGCATGGTGAC 1022607 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 1022668 29 100.0 32 ............................. GGAATAATTACCGCGCTGATTAAATTAATTAA 1022729 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 1022790 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 1022851 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 1022912 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 1022973 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 1023034 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 1023095 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 1023156 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 1023217 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 1023278 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 1023339 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 1023400 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 1023461 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 1023522 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 1023583 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 1023644 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 1023705 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1039233-1040358 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061329.1 Escherichia coli strain EC93 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1039233 29 100.0 32 ............................. CCCCTTGACCTTAACGCCGCGTTTAGCGTCAC 1039294 29 100.0 32 ............................. GGTATTTTCAGCAGATTAACCACCGCGATCGC 1039355 29 100.0 32 ............................. GGACGCCCAGGAAAAGGACATTGCAGCGTCAT 1039416 29 100.0 32 ............................. AAGGTCGTAAACATTGAAGACGCGATCGCGCG 1039477 29 100.0 32 ............................. TAACAGGAATGTTTACGCTGGCTGAGGCTGAG 1039538 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 1039599 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 1039660 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 1039721 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 1039782 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 1039843 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 1039904 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 1039965 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 1040026 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 1040086 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 1040147 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 1040208 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 1040269 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 1040330 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //