Array 1 60256-62260 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDOT01000026.1 Photobacterium aquae strain CGMCC 1.12159 contig0026, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 60256 28 100.0 32 ............................ TAGCAGGAAAGGGCAAAACGACCCCAAAACCG 60316 28 100.0 32 ............................ GGCATGGGATACCACTCTTGGGGCAACTGGAC 60376 28 100.0 32 ............................ TGCATCAAGAACAGACAAATCAACAGGCTGCC 60436 28 100.0 32 ............................ CGATGCGTAATACGGGGGTCATTGGGTGGGGT 60496 28 100.0 32 ............................ ATCAGGCAAATATGGCTCAAAATCCTCAAAAG 60556 28 100.0 32 ............................ TGGCTTTGTTGCCGCAAAATTAGTGCTTCTAT 60616 28 100.0 32 ............................ ATGCTAGGCACGAGCCACTCGATTTAGTTTAT 60676 28 100.0 32 ............................ ATCAGAAAAGCGACTTGCAACGGCATAAACAA 60736 28 100.0 32 ............................ GTAGATTGTGGCAAATGCTCAAAAACACGAGG 60796 28 100.0 32 ............................ CACAATCTACGGCTAATAAGCCAACTTCTAGT 60856 28 100.0 32 ............................ AGTAGAGGATGCTATGCAGAAAGAGCTGCGCA 60916 28 100.0 32 ............................ CTGAAAACCCATTGAATAACCTTGTTGTCGAT 60976 28 100.0 32 ............................ TCAACGTGGTTGGCAAACTGATAAGGGCGTTT 61036 28 100.0 32 ............................ TTACCCCATTGATGAAGGAGTTTTCCCTCATC 61096 28 100.0 32 ............................ AAGGTTCCGCTTGAGGTTCATCTTTTATATAG 61156 28 100.0 32 ............................ TCAAATCAGAAGGCAACTTATTAAAACTAATC 61216 28 100.0 32 ............................ TTATTTTCATCATTAGAAAAGCGACTTGCAAC 61276 28 100.0 32 ............................ GGTCAGCGAGCATCGCGCGGTGGGCAGATTGT 61336 28 100.0 32 ............................ AACTTGCTGGACGATTAGCGAATCCTTGGCAA 61396 28 100.0 33 ............................ CCAAGCCATCTAACAATTCGACCAGTAGAATGA 61457 28 100.0 32 ............................ AGAGTTGGATAAAGCAAATGATTCTCTTGCAG 61517 28 100.0 33 ............................ CAATATGGTTTGATGCTCATTGCTACAGCTAAA 61578 28 100.0 32 ............................ GTGATGGCCCCTTTTGCCTTGGCGGTCACGGC 61638 28 100.0 32 ............................ ACCAGCGGCACGCGGTGCCCTGAATGTAGTTA 61698 28 100.0 32 ............................ TGACTCCACATTGCCATCCTCCGAACCCTCAG 61758 28 100.0 32 ............................ AAGCGCTGTATGGCTCGCCGAGAGTGGTTGGC 61818 28 100.0 32 ............................ ACCAAGCAAAAGCAATACATCGAAGGGCAAAT 61878 28 100.0 32 ............................ AGAAACCGGAATATCTTTCGAAATAGATTTAT 61938 28 100.0 32 ............................ ACGGGGGTCTAGGAGATTTCATGGTCATGGTG 61998 28 100.0 32 ............................ CTCGCTTGTTCTATAACTCAACAACCAAGAAA 62058 28 100.0 32 ............................ GAGCTGATCGAGGCTGTTGCATGGTTGAGATC 62118 28 100.0 32 ............................ TGGAGCGCATCTACTGGCATGTTCACATCCGC 62178 27 89.3 28 ....................A...-..G TTTTATTAACAGTTCCCTTCCCGTGGGC 62233 28 78.6 0 ...........T.........CACT.C. | ========== ====== ====== ====== ============================ ================================= ================== 34 28 99.1 32 CTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AATCAATTAATGGCACAATCCTGGCTAAAAGGACTCAGGGATTACACCATCGTGGGTGATATTTTGCCTGTTCCTAGCGAAGTAAAAGGTTACCGAACCGTCTCTCGGGTACAAAAGAAAAGCCCGCAGAACTTGCGTAAACGCTCAATTGCAAAAGGCTGGTTAACAGAAGAGGAAGCCCGACACAGCATTCCAGACTCAAAGCAACCTCAATTAGCATTGCCTTACTTACAACTACAAAGCCAGTCAAACAAAAATGTGATGCGCATTTATGTAAGGCACGGTGATATCACTCAACAAGCAATAGATGGCGAATACTCCAGTTATGGATTAAGCCGTCAGGCAACCATTCCTTGGTTCTAACCTTTAGACCCTATTTTTCTCGATACTCATAAATTATTGATTTTAAAGTTATGTGTAGATGGCTTTAAAAATAGGGTTTTTATTTCAAATCGACATTTCGCTCTTTAACAACAAGGCTTTCAACGATATTATCAACG # Right flank : AGTAACACTGTCTTATCCTTATTTTATCCGCATTACCGCTAATTCTCTGTTATCATTGCCAACAATGAGCAGTGACTGCATGTGAACAAGATCATGAGCAACAACGACAATCAACCAACCCTTTTCTGGCTAGACTACGAAACCTTCGGTGCCAACCCGGCACTTGACCGTCCTTGCCAGTTTGCCGGTGTTCGCACCGATATGGATATGAACATCATTGGCGAGCCTTTGGTGATTTACTGCAAACCGCCGGTAGACTATCTACCCTCGCCGGAAGCATGCCTGATTACAGGGATCACCCCGCAGGAAGCCCATGAAAAAGGCTTGCCCGAGCACGAATTCATGGCCCTTATTCATGCAGAGTTATCTAAGCCCAATACCTGTGTAATTGGTTATAACAACGTGCGCTTCGATGATGAAGTCACCCGCTATTCGCTGTACCGCAATTTCATCGACCCTTACGCGTGGAGCTGGCAAAACGGCAACTCGCGCTGGGATCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 593934-593727 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDOT01000002.1 Photobacterium aquae strain CGMCC 1.12159 contig0002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 593933 28 100.0 32 ............................ AACAGCAATCAATCCAGCCATCATTAATATAA 593873 28 100.0 32 ............................ ACGAAACTGTACCGTTCATTGACGTTAAATGG 593813 28 100.0 32 ............................ GACGAGCAGCCAATGGCAAGATCACACGAACA 593753 27 82.1 0 ...........TA.......TT.-.... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 95.5 32 GTGCCCTGCCGAGTAGGCAGCCAGAAAA # Left flank : TCTTTGATGGTAAAAGAAGGTCTTTTTGAAATATCGAGTGTTTGCGAAGTTCCCACAGATAGTCCAGAAGTGAGGTTTGTACGAAACCAAACCATAGGAAAGAGCTTTATTGGGTCCAAGAAACGGCGAATAAAGCGGAGTATGGCGAGAGCTGAGTTGTCTGGTGCTGAGTATTCATTGCCAGTTGCGGTGGAGGAACGAGTTGTAGACCATTTCCATCGAGTACCAATTTCCAGTGGTTCTTCTGGACACGACTACATCTTACACATTCAAAAAGAGGTCGCTAGTGAACGCTCTGTCGCCAATTTCAATAGCTACGGATTAGCCACCAACCAAGAAAAAAGAGGGACTGTACCTGACCTATGCATATGACCCTTTTTTACTGGAGGATTTTCGTGGATATAAAAACAATGACTTACAGGCATTGAAATAAAAAGGGTTTTAGAGGTTTTGTGACGTAAAGCAAAAGATAATCAGCCAGTTAGAGCCTATAGTTAACA # Right flank : TGGAAAAGCAGTCGAGATTAGGCCTGAAAGTAAACTACCTACTGAATAAGTAGCTGAGAATAGGCCAGGATGAGAGCAGCCAACCTGCTGAAAAAGCAGTATTTAACAAAAAACACTAAGTTGAAGCTTGGTGTTTTTTTGTTGGTTGTGGTTGGCTATGTTCAGTTTCGATCTAACCACACTCGCTAGCTCAGTTTTGCCCCATTGCGTGTTTCGAACAAGGTTCTACATTACGGCTAGTAGCCCATTTTGCTATAAACTATCTAATGTCATTTTTTTATCGAGAAACGACTTATGAGCAAGAAAAGGTTGTCAGAAAAAGAACTACTTGATGGTATGACACACGATACTGCCCATGTTGATGAGCTTGCAACGGTATCATGGGATGAACTAGGGGTAGAATTCTCAGAAAGCGAATATAAAGCCGTTATGAATAGAATTGAATCCCTGTTTGATGTGGCTGAACCAGGCACACCCGAAGGTGACGAACTTGAAAAGTT # Questionable array : NO Score: 2.64 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCCCTGCCGAGTAGGCAGCCAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 3885-3635 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDOT01000053.1 Photobacterium aquae strain CGMCC 1.12159 contig0053, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 3884 37 100.0 34 ..................................... TAAGCAAGGCACGGGTACCTGACTGTGTATTCAT 3813 37 100.0 33 ..................................... ATAGAACTCTTGCATGATTTCTGGGATGTACGA 3743 37 100.0 35 ..................................... CTGTACCAGTCCTACCGATCATCAACACTACTTTA 3671 37 91.9 0 ...............................A..A.A | ========== ====== ====== ====== ===================================== =================================== ================== 4 37 98.0 34 GTCTGAAAGGACGAGCCCTGACTAAAGGGATTAAGAC # Left flank : CAGACAAAGGCACTAAACTCGCCTGTTGATTCAGCTTTTGTCCGCTAAATAATAGCTGAATTCCTTTCTCTGCCAGAATTAGCATGACATCAGAAGTAAGGCTGACACCTTTACCTATGATTAACTGACTGATTGAAGCCCAGGGAATCACCTTCTGCCCTTTCGCTAGATGGTGACAGCGCAAGAGACCATCTGATACTGCCAGTTCATAACCCTTTTCGTCCAATACCAAAAGCGTCATCTCTCCTCCTGTTAGATTTGCTGGTAATACACTATTTAACTTAACAGCAGGAGGTGAATAATCTGGTTTCACAAACTTGTGAGTGGTGATGTTACCCATGTTATTAATCGAAAATATATTATTTATAACCGCTTGATGGAAAACAAGGTGACTTTAACATGGCATGAAAAATGCTTAATTCGTTAAAATCATCTTTGTTTAAAACGTCTGTTTATTTGCAATTTGCAACTTTAAAATCAGACGGTTATACTTGCCTCTT # Right flank : AGCGATGACGAAAGCCATCGCTTTTTTGCTAACACCACCAATCTAATCCTCTGAGCGGTATTCCGACTCTTTGACTTGAGCAGGCCAAACTTCATTGCTCAGGCGGCCCTGCTCTATCGACCACTTATACTGTTTGAGTAGCTTTTTCAGCTCGCTGATCCGTACCCGCTGTGACGGGCTCCCTGCCGCATCCTTAAAAGTAGTAATAAATGCTCCTTTGAGGTTATAGCTTAAATGGCTCCACCAGGCATACCACGGCCCTTGTGGTATTGCGCCCTGGCTGCCGGGGCGGATTGACTGACCATACGGAAAATGACCGGTGCCAATATTGCTTGTGATGCTGGTACCGCCAATATGTTCATAAGGGTGACGGCCCGACATGAGCAACATAAAACAAATTGCGGTTAAGGAGAACAAGTCGCTGTTTTCATCTCGCACCACCTCTTTCAACTTTAACCCCTGATGCTCGGGCGGGATCATGCTATCTTGCCCAACCGGGC # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGAAAGGACGAGCCCTGACTAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.90,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 11627-11232 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDOT01000053.1 Photobacterium aquae strain CGMCC 1.12159 contig0053, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 11626 37 100.0 35 ..................................... GCAGTGTTGTTCTGGGTGTATGGCAATACAGATGC 11554 37 100.0 35 ..................................... CCAGCGCTTACGGATAGATTCTTGGGCAACTTCAA 11482 37 100.0 34 ..................................... GATATCCCCGCAACCCTAGGTTATTTATCGGAGA 11411 37 100.0 34 ..................................... CAAGGATTCTCTTTCATTTCTTCACGAGCAGCAG 11340 37 100.0 35 ..................................... CTCGGGTGATTGTTTTACTGGATTGTAGATGTATG 11268 37 86.5 0 ......................C.........CT.CT | ========== ====== ====== ====== ===================================== =================================== ================== 6 37 97.8 35 GTCTGAAAGGACGAGCCCTGACTAAAGGGATTAAGAC # Left flank : GCACCGCATTAGGCAGCGCCCTGGGGCTGCTTGGCGGCCCGGCCGGTCTTTTCGCAGGTGGGATTGCCGGTAAGTTGATCACCGACCATCTGGTTGATGATGAGTACGAAGAGCACTACTACACCATAGGCGTTGATATCAGCGAGGTGCTGGCCAAAGGTGATACGGTGATCCAGCAGGCCGTGACCGAGGCAATAGAGTGCAGCATCAATTGGGTGATCCAACAGTATATTAAGCCGGTGAAGGACTACCTGGCCGATGCCTTGGCGCATATCGCGAGGCTAAGTGACACCGTGCCTCACTCAGGATGAATTAGTCATAGGTCCGCCACAGGAAGATGGCGGCCTTTGCTTTTTAGCCATTTTTAACATATTGATACATAAGAACACTAATTTCACATGGCATGAAAAATGCTTACTTTGTGATTTTTGGCCTTGTTTAAAACGCTTGTTTGGTTGCAATTTGCAACATTAAAATCATAGAGTTATACTTGTGCTTAG # Right flank : GGCCTGCCGCTCTGCGACGGGCTTTTTTTCCTCTTTTTTCACAAGTTTGTGAGTCCCGCTTTTCTCGCACAGCGGCGTTACAGTAAGTGCATCGTTAAGTCTGATTTTCTGCGGAGATCGTTATGAATCCATATCAGCCTGCCTGTGATGCGCTCGGCCACATTCAAACTTTGCTTGCTAAAAGCAAGGTGCACGCTCAGTACCTGCCCCTGATCAGCGAATGGCAAGATCAGCTTGTCCGGCAAATGCCAACTGTGATGCTCTATGGCAACTACAATGCCGGTAAAAGCAGCCTGATTAACTTGCTTGTGGGAGATACTGTCGCCACAGAGGGCGAGATCCCGACCACGGCCCGGGTGCATACCTACCACTGGCAAGGTATGCCATTGTTAGATACGCCGGGTATTAATGCGCCCATGGCGCATGAACACATCAGCCAGCAGCAGTTGGCAAAAACGGATCTCGTGCTGTTTGTGATACGAAACTCAGATGTGGATGAT # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGAAAGGACGAGCCCTGACTAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.90,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //