Array 1 59550-58850 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNPK01000031.1 Escherichia coli 2-156-04_S3_C2 e215604S3C2.contig.30_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 59549 29 96.6 32 .....G....................... GGTGAGGCGTCATCTGACGCAAAATCTGGTGC 59488 29 100.0 32 ............................. GACAGACCAGTGGCGGCGGGGTAAATAAATGA 59427 29 100.0 32 ............................. TTGGGGCTGGGGTTCGGTAATCAGATTATTGA 59366 29 100.0 32 ............................. CCAGTGGATTGAGACCACTTATCAGATCACCG 59305 29 100.0 32 ............................. GTCTTAAACTCTTTCGGTTGGATTAGCTCTGC 59244 29 100.0 32 ............................. ATCTATTGGCGGAAATAGCGCCCGGTGCTGAG 59183 29 100.0 32 ............................. CCAATCAGGTCGTCGATTTTGCGCGGCTGCGT 59122 29 100.0 32 ............................. TACCGGTGGTAAGCAGCTTGAAATGGGCGACA 59061 29 100.0 32 ............................. AAAACTGTTGCTTTGTGATAAATATTCGCGGG 59000 29 100.0 32 ............................. TCGTTATTTACGGTCATGTCGTCACGTCGGGG 58939 29 100.0 32 ............................. ACTGCGGCGTCAGCCATGTCGGCGAGGACATC 58878 29 96.6 0 ....................A........ | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GACCTTGCCCCTGTTGATTTGCTGATCCAGCGAGCAGGGCGATTACAGCGACATATCCGCGATATTAATGGTCAGTTAAAGCGTGACGGTAAAGACGAGCGTCACCCTCCTGTATTGCTGATTCTGGCCCCCGTCTGGAACGACTCTCCGGGTGAAGAATGGTTTGGCAGTGCCATGCGTAACAGTGCATTTGTCTATCCCGATCATGGGCGAATCTGGTTGACGCAGCGTGTGCTGCGTGAACAAGGCGCGATTCAGATGCCACACTCAGCCCGGCTTCTGATTGAATCAGTCTACGGTGAGGACGTGGTAATGCCGGAAGGGTTTGCCCGCAGCGAGCAGGAGCAAGTGGGCAAATACTACTGCGATCGTTCAATGGCTAATAAGTTTGTGCTGAACTTCAGGCCCGGCTATGCCGCCAATATCAACGATTACCTTCCGGAAAAACTGTCGACACGTCTGGCTGAGGAGTCTGTTTCCTTGTGGTTGGCTACCTGTAT # Right flank : TGCAGTACGCCTGATGACAAACCAAGCATCGGGAGTTCCCATTTTCAAACGCCTCATGACGCCTTCGCCAGTTCCTTCACTAGCGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCCGGGAAGGCCGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCTGCATCGTTACAACACCCAGTGCCTTTCGGATAGTTTTTATTCAAACCTGGATTTGTTGTCGCTGCAATCCCATGATTATGCGCAATTGCCAGCGCTCGATCACGGGTTAATTTCCTGACAGCCTCTGGTGTATTTACACCACTATTAAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 79895-79134 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNPK01000031.1 Escherichia coli 2-156-04_S3_C2 e215604S3C2.contig.30_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 79894 29 96.6 32 ...........................T. GATGCCGGGCCACGCAGCAGCAGCGAACCGGA 79833 29 96.6 32 ...........................T. TGACCAAACTTGTGATGAGGAAAGACCAACGA 79772 29 93.1 32 ...........................TT TGCAGGGAGTAGATCAACAGTTATTAAAATCC 79711 29 96.6 32 ...........................T. ATTTTTTCCGTTAGTTGGTGAGCGTGATGACA 79650 29 100.0 32 ............................. CGTTTCGGCTGATTTGTTCGCCGCGTCGGTGC 79589 29 100.0 32 ............................. GCGAAAAAATACGGCTGGATGCGACAAAAAAA 79528 29 100.0 32 ............................. TCTGACCAACTTCAGCCGCAGAACGGCCCCGC 79467 29 96.6 32 ............................T GAAATCGCGGGAGAGAGTTCGCGCATTATCAG 79406 29 100.0 32 ............................. ACGCGTTTCAATTGATGTAGAGACGGTTCTTG 79345 29 100.0 32 ............................. CTGGGGCAGGCGACAGGAACGCAGTCTGAACC 79284 29 93.1 32 .........G..C................ TAAGATGATCTCACGGAATTGAACGAACTACG 79223 29 93.1 32 .........G..C................ GACACAGAGCGCCGCTATAGCGCCTATGCCAA 79162 29 93.1 0 ....................A.......A | ========== ====== ====== ====== ============================= ================================ ================== 13 29 96.8 32 GAGTTCCCCACGTCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCACGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGCAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTGCTCATTTATATTCTTTGTCGCCTCTGAAAAACCTCCATTTTGCCCGTCCTAAACTAATCATTATCATTCTCTATAAATTCTATGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCGGTAAAGTTTGGTGGATTTTAGTCGGTATAGGATTACTTTAAATATTTAGCTTTTCAATCAATGAATTAAGTGCTCTTTAACATAATGGGTGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGAATTAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCATATATGAAAAGTTCACAATTATCGATACAAAAAATCAAATTTAATTAAAGTGTTAGTTGTATGATACTTAAATCATTAAGAAATTATCATATATTATTTTTTTAATATTGAATTGATATTTGTTAATTTTTTCTTTAGGGTAATAGTTTGTTTTTTAAGCTTATTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATAGGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAATGAAAATTGATAAAGTACGGTTTGCGTTGTCTTTTATTCTAAGGACATCGAGTGTAGTTAATATTCCTTGTAACAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCACGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCACGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.10,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //